Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01173 ATGGAAGAGCCTAGGGAGAAGAATTACGGGCTTTCGTTTTCTTCACTTGCACTTTTGAGGAATTACGACACTGGATTCAGATTGAATATGGACAAACGAATCGAGACTAGCAGTGATACAGAGGATGCCGGGTGGGAATTATCGACCGGAGAAATCATGAAGATTGCTGGTACAAAGTTCATTCAGTCATTTTCTCGAGTAGGGGATGTGCACTCCACGATCGATCATCCCTTTGATGTTTCCTTCTCTTCTCTCTCAGCTGAAGAGATCAAAGATGTAGAACTTGCTGAAATCCTCCTCGCTTCTGCCGAGAAAGTTGGAGCTCAACAATATGAACGAGCAAGCAATTTACTCAAACAGTGTAATTACTTGTCTTCAAATCTCGGGAGTCCTGTCCAACGAGTTGTTTATTACTTTTCCGAAGCTCTAAGGGAAAGGATTGATCGAGAAACCGGAAGAATCATGAAAGAAAGCTTGGGAAATCATCGATCAGTCAACATTGATGAAGCTTTGATGAGTCCGAATTCCACAGTACTTGCGTATCAAGAAAAAATTCCCTTTGCACAGACTGGACAATTTCCTGGAATCCAGGCAATACTAGAGAAAATTGGGAGCGCAACAAAGATTCACGTGATTGATCTTGCAATAAGATATGGAATTCAATGGACCGTTCTAATGCAGGCTCTTTCTTCTCGTTCCGAATCTCCTGTCAAACTTCTGAAGGTGACAGCAATCGGGACTAATCTCGAGCATTTGATTGAAGATACTGGGAGGAGGTTGGAGAGTTTTGCTCAGACTATGAATTTACCTTTCTGCTTCAAAACAATCATGGTTTCAGACATACTAGATCTTAGAAAAGATCAATTTGACCTAGATTCTGAAGAAACAGTAGCCATCTACGCAGCATACTTCCTGAGAAGCATGATACCACAACCTGATCGATTGGGATCTCTGATGAGAGTGATCAGAAGCATCAAACCCTCTATAATGGTGATAGCAGAAGTAGAGGCCAACCATAACTCGCCATTTTTCGTGAATCGATTTGTGGAAGCTCTTTTCTTCTTCAGTGCACACTTTGATTGCCTTGAAACCTTCACGAAACGTGACGATCCAAACAGAATAATAGCGGAATCATTATTCTTCGGCGAGGGAATCAAGACCATGGTAGCGAAGGAGGCAGATGAACGGACGAACCGAAACGTGCCCATGGATGTTTGGAGGGCATTTTTCAGTGGGTTTGGAATGGAGGAGATGGAATTGAGCTCCTCCTCCCTGTACCAGGCAAGGCTAGTGGTTCAGAGATTTGGCTGCAGCAGCTCTTGCACGCTGAGAATGAATGGACAAAGCTTGATCATTGGGTGGAAGGGTACGCCAATGCATTCACTTTCAGCTTGGAAGTTTGTCTGA 1407 43.57 MEEPREKNYGLSFSSLALLRNYDTGFRLNMDKRIETSSDTEDAGWELSTGEIMKIAGTKFIQSFSRVGDVHSTIDHPFDVSFSSLSAEEIKDVELAEILLASAEKVGAQQYERASNLLKQCNYLSSNLGSPVQRVVYYFSEALRERIDRETGRIMKESLGNHRSVNIDEALMSPNSTVLAYQEKIPFAQTGQFPGIQAILEKIGSATKIHVIDLAIRYGIQWTVLMQALSSRSESPVKLLKVTAIGTNLEHLIEDTGRRLESFAQTMNLPFCFKTIMVSDILDLRKDQFDLDSEETVAIYAAYFLRSMIPQPDRLGSLMRVIRSIKPSIMVIAEVEANHNSPFFVNRFVEALFFFSAHFDCLETFTKRDDPNRIIAESLFFGEGIKTMVAKEADERTNRNVPMDVWRAFFSGFGMEEMELSSSSLYQARLVVQRFGCSSSCTLRMNGQSLIIGWKGTPMHSLSAWKFV 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13524060 13525466 - Bda017243.1 Bda03g01173 4432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01173 468 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 466 IPR005202 -
Bda03g01173 468 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 6 466 - -
Bda03g01173 468 ProSiteProfiles GRAS family profile. 86 466 IPR005202 -
Bda03g01173 468 Pfam GRAS domain family 96 466 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01173 - - - pvy:116122852 566.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01173 Bda-Chr3:13524060 Bda04g00679 Bda-Chr4:55416044 4.80E-153 dispersed
Bda03g01173 Bda-Chr3:13524060 Bda11g00148 Bda-Chr11:1930930 4.99E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g81 . Blo12g00085 Bda03g01173 . Bpe04g01111 . Bma04g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018085 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15731 PF03514 GRAS 1.30E-87 CL0063 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01173 Bda_Chr03 FPKM 22.842039 22.489614 12.830589 13.050499 26.794352 23.408762 27.743872 11.339003 12.356082