Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01176 ATGATTGCATTCTGGTGGCCTCTGCTCGTTCTAGGACTTGCTTATGCGATCTGTAGATTCCTCTTGATGCTCATTCCTCATAACGTGCCTTCTATTGAAGTCGACGCCTCCGATGTTCTGGATGACGGAAATCAAACTCAGGAGAACAGCTTCATATATATACCTCCAAGAGGAAGGACGCAACAGTCGGATAAGAAAGTTCAGTGCTACGAGCCCGCAACCATGAAATACTTGGGGTTTCTTCCCGCATTGACTCCAGCTGAGGTCACAAAGAGAGTGGCACTGGCAAGGAATGCTCAGAAAACATGGGCCAAAAGTAGCTTCAAGCAAAGACGGCAGTTCCTAAGAATACTACTGAAGATATCTTCTCGTGATACCGGGAAGACAATGGTAGATGCTTCTTTGGGAGAAATAATGACAACATGTGAGAAGATCACTTGGCTCCTTTCAGAGGGGGAGAAATGGCTAAAGCCTGAATATCGATCTTGCGGAAGATCAATGCTTCACAAGAAAGCCAGAGTCGAGTTTCATCCTCTTGGTGTCATTGGAGCCATTGTCTCTTGGAACTATCCTTTTCATAACATTTTTAATCCAATGCTAGCTGCTGTCTTTTCTGGCAATAGTGTTGTAATTAAGGTCTCAGAACATGCAAGCTGGTCTGGATGTTTTTACTTTCGAATAATCCAAGCTGCACTTGCTGCTGTTGGGGCTCCTGAAAATGTGGTTGATGTGATAACGGGGTTTGCTGAAACGGGAGAGGCATTAGTGTCTTCGGTTGAAAAAATCATATTTGTTGGATCACCTGGTGTGGGTAGGATGATCATGGCAAATGCAGCCGAGACACTCATACCAGTTACACTTGAGTTAGGTGGAAAGGATGCATTTATTGTGTGTGATGACGTGGATTTGGATCATGTTGCACACGTTGCTGTCAGAGCTTCCCTTCAATCAAGTGGACAAAATTGTGCTGGAGCTGAGAGATTTTACGTCCACAGGAATATTTATTCTTCATTTGTTAATGAAGTATCCAAAATTGTGAAGTCTGTTGCTGCTGGCCCACCGCATTGTGGGAAATATGATATGGGAGCCATCTGCCTGCAACAGCACTCTGAAAAGCTTCAAACCCTAGTAAATGATGCTTTAGAGAAAGGGGCAGAAATTGTTGCCCGTGGAAGTTTTGGACATTTGGCTGAAGATGCTGTTGATCAGTATTTCCCCCCGACTGTGATTGTAAATGTGAACCACACTATGAAACTGATGCAAGAGGAGGCATTTGGACCAATAATGCCAATAATGAAATTCAGCACTGATGACGAAGCCATTGCGCTTGCAAATGACTCCAAATATGGGCTTGGCTGTGCTGTTTTTTCTGGCAATCAGCATCGTGCAAAGGAGATAGCTTCACAGATTCATTGTGGAGTTGCTGCAATTAATGATTTTGCATCAACTTATATGTGTCAGTCCTTGCCATTTGGTGGTGTGAAACACAGCGGATTTGGGCGATTTGCAGGAATTGAAGGATTGCGAGCCTGTTGTCTGGTAAAATCAGTTGTTGAGGACAGGTGGTGGCCTTACATCAAAACAAAGATACCTAAGCCTATTCAGTATCCCGTTGCGGAGAACGGTTTCGAGTTTCAGGAGTCGCTAGTGGAAGCATTGTATGGCCTCAACATATGGGACCGATTGCGCGCATTGGTGAATGTTTTGAAGATTGTTTCAGAACACAACTCTGGTTCTACTAACAATGCTGCAGCTACAAGCAAGAGGAGCAGCTGA 1776 44.31 MIAFWWPLLVLGLAYAICRFLLMLIPHNVPSIEVDASDVLDDGNQTQENSFIYIPPRGRTQQSDKKVQCYEPATMKYLGFLPALTPAEVTKRVALARNAQKTWAKSSFKQRRQFLRILLKISSRDTGKTMVDASLGEIMTTCEKITWLLSEGEKWLKPEYRSCGRSMLHKKARVEFHPLGVIGAIVSWNYPFHNIFNPMLAAVFSGNSVVIKVSEHASWSGCFYFRIIQAALAAVGAPENVVDVITGFAETGEALVSSVEKIIFVGSPGVGRMIMANAAETLIPVTLELGGKDAFIVCDDVDLDHVAHVAVRASLQSSGQNCAGAERFYVHRNIYSSFVNEVSKIVKSVAAGPPHCGKYDMGAICLQQHSEKLQTLVNDALEKGAEIVARGSFGHLAEDAVDQYFPPTVIVNVNHTMKLMQEEAFGPIMPIMKFSTDDEAIALANDSKYGLGCAVFSGNQHRAKEIASQIHCGVAAINDFASTYMCQSLPFGGVKHSGFGRFAGIEGLRACCLVKSVVEDRWWPYIKTKIPKPIQYPVAENGFEFQESLVEALYGLNIWDRLRALVNVLKIVSEHNSGSTNNAAATSKRSS 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13552500 13558604 + Bda017247.1 Bda03g01176 4435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01176 591 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 315 326 IPR016160 GO:0016491
Bda03g01176 591 Pfam Aldehyde dehydrogenase family 62 517 IPR015590 GO:0016491
Bda03g01176 591 CDD ALDH_F15-22 70 521 - -
Bda03g01176 591 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 287 294 IPR029510 GO:0016491
Bda03g01176 591 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 295 490 IPR016163 GO:0016620
Bda03g01176 591 PANTHER ALDEHYDE DEHYDROGENASE-LIKE PROTEIN YHR039C-RELATED 4 552 - -
Bda03g01176 591 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 66 515 IPR016162 GO:0016491
Bda03g01176 591 SUPERFAMILY ALDH-like 56 519 IPR016161 GO:0016491
Bda03g01176 591 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 4 552 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01176 - - - gra:105796901 1028.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01176 Bda-Chr3:13552500 Bda06g00225 Bda-Chr6:3830672 8.01E-63 dispersed
Bda03g01176 Bda-Chr3:13552500 Bda06g00234 Bda-Chr6:4124204 3.26E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g75 . Blo12g00082 Bda03g01176 . Bpe04g01114 . Bma04g01129 . Cmo08g01242 Cmo17g00356 . . . . . . . . . . . . . . Cla06g00431 Cam06g0457 Cec06g0463 Cco06g0462 Clacu06g0444 Cmu06g0445 Cre06g1221 Cone14ag0722 Cone15ag0731 . . . Csa06g01741 Chy11g01565 . . . . . . . . . Sed04g3106 . . Cma08g01274 Cma17g00366 Car08g01144 Car17g00339 Cpe12g00317 Cpe17g00066 Bhi12g01925 Tan06g2751 Cmetu11g1721 Lac11g0932 Hepe03g0048 . Lcy12g0802 . . . . . . . . . . Cme11g02077
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00121 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G24503 68.3 7.4e-204 706.8
Bda01g01881 CCT 3 464 Aldehyde Dehydrogenase Gene Family AT3G24503 68.3 2.4e-186 648.7
Bda11g01261 . 34 536 Aldehyde Dehydrogenase Gene Family AT3G24503 53.0 7.5e-156 547.4
Bda01g02225 . 30 470 Aldehyde Dehydrogenase Gene Family AT3G24503 55.4 1.7e-139 493.0
Bda11g01261 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 77.4 8.1e-249 856.3
Bda01g02225 . 1 470 Aldehyde Dehydrogenase Gene Family AT3G48000 77.6 3.3e-218 754.6
Bda11g00121 . 20 504 Aldehyde Dehydrogenase Gene Family AT3G48000 54.0 4.1e-160 561.6
Bda01g01881 CCT 3 464 Aldehyde Dehydrogenase Gene Family AT3G48000 53.5 2.8e-148 522.3
Bda01g02225 . 1 375 Aldehyde Dehydrogenase Gene Family AT1G23800 78.6 2.9e-174 608.2
Bda11g01261 . 1 380 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 4.3e-170 594.3
Bda11g00121 . 20 348 Aldehyde Dehydrogenase Gene Family AT1G23800 55.3 3.0e-102 369.0
Bda01g01881 CCT 3 308 Aldehyde Dehydrogenase Gene Family AT1G23800 55.9 4.7e-92 335.1
Bda11g01389 . 49 558 Aldehyde Dehydrogenase Gene Family AT4G34240 67.8 3.8e-198 688.0
Bda03g00014 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 62.8 3.7e-177 618.2
Bda03g00014 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.5 1.4e-179 625.9
Bda11g01389 . 145 554 Aldehyde Dehydrogenase Gene Family AT1G44170 67.6 1.1e-160 563.1
Bda02g00634 . 67 497 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 1.4e-115 413.3
Bda11g01847 . 1 501 Aldehyde Dehydrogenase Gene Family AT4G36250 61.2 1.6e-184 642.5
Bda02g00634 . 1 499 Aldehyde Dehydrogenase Gene Family AT4G36250 54.4 1.1e-161 566.6
Bda06g00234 . 1 530 Aldehyde Dehydrogenase Gene Family AT1G79440 77.5 1.5e-236 815.5
Bda06g00225 . 1 530 Aldehyde Dehydrogenase Gene Family AT1G79440 77.4 4.5e-236 813.9
Bda06g01109 . 2 484 Aldehyde Dehydrogenase Gene Family AT1G79440 74.9 8.8e-216 746.5
Bda15g00480 . 12 503 Aldehyde Dehydrogenase Gene Family AT2G14170 81.1 9.9e-232 799.7
Bda06g00575 . 1 520 Aldehyde Dehydrogenase Gene Family AT1G74920 77.9 1.9e-244 841.6
Bda06g00575 . 1 522 Aldehyde Dehydrogenase Gene Family AT3G48170 75.9 6.0e-246 846.7
Bda11g00046 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 88.9 3.7e-264 907.1
Bda13g01096 . 17 275 Aldehyde Dehydrogenase Gene Family AT2G24270 75.1 2.9e-115 412.5
Bda11g01689 . 1 554 Aldehyde Dehydrogenase Gene Family AT5G62530 79.5 8.3e-273 936.0
Bda03g01176 . 4 588 Aldehyde Dehydrogenase Gene Family AT3G66658 80.2 3.5e-285 977.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007085 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01176 Bda_Chr03 FPKM 11.363234 10.956447 7.791338 8.480847 5.728895 5.95002 6.561545 16.742653 14.344264