Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01178 ATGGCTCGCATTAAACCTCAAACGCTTTTACTTCAAAGTAAAAAGAAGAAGGGGCCAACACGAATCAGTGCGGCTACAATAGTTTTGTGTAACTTAACAGTTGTGTTGATTGTGTTATCTGTAGTCGCAACATATAGACATTTGTCTAAAAGGACAAAGGACCAAATGCTGGATGAATCATCATCTCTTGGGGATTCGGATACGCTTCGAGATTCAAAGCACTACGATCTTCCTAGATTTGCTATTTTGAATACATCTAAAGGTTATCTAACAGTGGAACTTTACAAGGAAGGTACTCCCGAAGTTGTGGACAGATTCCTTGACCTTTGTCAAAAAGGGCATTTTAAAGGAATGTCTTTTCATCATGTTATTAAACACTATGTGATTCAAGGAGGAGAATCTGAAGATCTGGGAGCTGCTGAAAATTGGATTGCAAAAGTGAAGCTTGACCCACTTGCCACCAGTCCCAAGCACGAGGCATTCATGCTTGGAACGTCAAAAAATAAAGATGGGAAAGGCTTTGATCTGTTTATTACAACGGCTCCCATTCCTGATTTGAACGATAAGATCAGTGTGTTTGGACGAGTTATCAAAGGAGAGGATGTGGTGCAGGAAATGGAAGAGGTGGATACAGATGAACATTATCGCCCTAAATCACCCATCGGAATTATAAATGTCACATTGAAACAGGAAATCTGA 699 40.06 MARIKPQTLLLQSKKKKGPTRISAATIVLCNLTVVLIVLSVVATYRHLSKRTKDQMLDESSSLGDSDTLRDSKHYDLPRFAILNTSKGYLTVELYKEGTPEVVDRFLDLCQKGHFKGMSFHHVIKHYVIQGGESEDLGAAENWIAKVKLDPLATSPKHEAFMLGTSKNKDGKGFDLFITTAPIPDLNDKISVFGRVIKGEDVVQEMEEVDTDEHYRPKSPIGIINVTLKQEI 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13699470 13713927 - Bda017249.1 Bda03g01178 4437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01178 232 CDD cyclophilin 82 225 - -
Bda03g01178 232 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 82 227 IPR002130 GO:0000413|GO:0003755
Bda03g01178 232 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 232 - -
Bda03g01178 232 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 77 228 IPR002130 GO:0000413|GO:0003755
Bda03g01178 232 Gene3D - 68 232 IPR029000 -
Bda03g01178 232 SUPERFAMILY Cyclophilin-like 75 228 IPR029000 -
Bda03g01178 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Bda03g01178 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 175 187 IPR002130 GO:0000413|GO:0003755
Bda03g01178 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Bda03g01178 232 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 188 203 IPR002130 GO:0000413|GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01178 - - - pop:7485906 342.428
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01178 Bda-Chr3:13699470 Bda03g01656 Bda-Chr3:55877999 5.06E-21 dispersed
Bda03g01177 Bda-Chr3:13578290 Bda03g01178 Bda-Chr3:13699470 7.00E-172 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g73 . . Bda03g01178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011781 2 1 0 1 0 1 2 1 1 1 0 0 1 1 1 2 1 2 2 1 1 1 1 0 0 0 0 2 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01178 Bda_Chr03 FPKM 95.78846 101.794861 52.442154 48.056492 159.630936 188.352554 151.572052 129.620422 130.72049