Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01181 ATGGATAATAGCCTTCAAGGAATGCTTGTTGGTTCGGAGATTCATGGATTTCATACGTTGAAAGACTTGGATGTGGGGAACATTATGGAGGAAGCAAAAATGAGATGGCTACGACCGAATGAAATTCATGCTATACTCTGTAATAACAAATACTTCAGCATCAAGGTCAAGCCAGTGCACTTGCCCCCAGGTGGCACTATAGAGTTATTTGATCGCAAGATGCTTAGGAACTTCAGGAAAGATGGTCATAACTGGAAAAAGAAAAAGGATGGCAAGACCGTTAAGGAAGCACATGAACACCTGAAGGTTGGTAATGAAGAAAGGATCCATGTATACTATGCACATGGACAGGATACTCCAACCTTCGTCCGTAGGTGTTATTGGCTACTTGATAAGAGTCTGGAACACATAGTTCTTGTTCATTATCGTGAAACTCAAGAGTTGCAGGGTTCTCCAGCAACCACAGTGAATTCTAATTCTAGTTCTGTCTCTGACCATTCTGCCTCCTGGCGTTTTTCGGAAGAACTAGATTCTGGGACTGACCAAGCTCTATATGTTGGTGAAAATGTACTTCTAGAGCGTAGTAATAAGTTAACTGCGAAGCATTATGAGCAAAGACTTCATGAAATTAACACGCTTGAATGGGATGAGCTTCTTGTAACAGATGATCTTTCCAACATGCCTAAAGGAGGAGACAAAGTCTTAGGTTTTCACCAACAGAATCAAGTTGCGGCAAATGATTCCACTGTTGGAGGAGGCGACACGTTGTTGGAGGAAATTTCTACATTTGACAATGTCAGTGGATCCATTGGGAGAAATAACACAAATCATTTTGGTTTGCCAAATAGCTCCTACATATCTACTATGGTTAGTCAATTAAATTCAAATGCACAGAAAGGGAATACCATTGCAATGGCCTCCAATGTACCCTTAGATATTATGGCCAACGAGGGGTTGCAAAGTCAGGATAGCTTTGGCCGGTGGATAAATGATATTATCTCTGACTCTCCTGGTTCTGTAGATGATCCAGTTTTTGAGTCCTCCATTTTACCTCATTATGATGAATTTACCTCTGCTACGATAAATCATCATGCATCTTCTGTGCCAGAGCAAATGTTTACCATAACTGATATCTCTCCTGGATGGGCATTTACTGCAGAAAAAACCAAGATTTTAATAACTGGATTTTTTCATGAAGAGTTTGCTCATCTGGCTAAGTCCAATTTGTTGTGTCTCTGTGGCGATGTTTGTATTCCTACAGAAGTCGTTCAACTTGGAGTTTATCGTTGCCTGGTACCTCCACATCCACCTGGATGTGTAAATATCTATCTCAGTTTAGATGGTCATAAACCAATCAGCCAAGTTATGAATTTTGAGTATCGCAACCAATTATTGGATGGTTCAGGAGTTTCTTTAGACGAAAAGGAAAGGTGGGAGGAGTTTGAAGTTCAGATGCGGCTTCTTGGTTTGCTTTTCTCTACATCGAAGAGCCTGAACATTCTGTCTGGTAAAGTATCACAAAATGCCCAAAAGGTAGCGAGAAACTTTGCTCAAAAAACATCTAACATTGCTAATAGTTGGGCTTATTTGCACAAGTCAATTCAAGATAACAAAATTTCGTTTCCTCTAGCAAAAGATGGCCTATTGGAACTTATTTTGAGGAACAGAGTAAGGGAATGGCTGTTAGAAAGGATTATTGAAGGCTCCAAGAAGAGCACTGAATTTGATGCTTACGGTCAAGGAGTAATACACTTGTGTGCCATCCTGGGATATTCATGGGCTATACAATTATTTGCTTGGTCAGGTTTAACATTGGATTTTCGGGACAAATCTGGATGGACAGCTCTTCACTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAGTTCTTCTACATGCTGGAGCAAAGCCAAACTTGGTTACAGACCCAACCTCAGAAAATCCTGGGGGATGCACAGCTGCTGATCTTGCATATGTAAAGGGTCATGATGGCTTGGCTGCCTATCTTTCAGAAAAGGCGTTAGTAGCTCATTTCCAGGAAATGAGTATAGCTGGAAATATAAGTGGTACACTGCAAATCAACACAACTGAGAGGGAGAGTGTAAACCCTGAGAATCTCAGTGAGGAGCAGCTATATATGAAAGATACTTTGGCAGCCTACAGAACGGCTGCTGATGCAGCAGCACGTATAAATGCTGCATTTCGCGAGCATTCTTATAAGCAAAGAACTAAAGAAGTTCAGGTTTCTACTCCAGAGATGGAAGCACGCAATATTATTGCAGCTATGAAAATTCAGCATGCATTCCGCAATTATGAAATGCGACGAAAAATGGCAGCTGCTGCTCATATACAACACAGATTCCGTACTTGGAAAATGCGTAAAGATTTCCTTAACACGCGACGTCAAGCTATAAGAATTCAAGCTGCATTTCGAGGCTTCCAAGCACGGAGGCATTACCGTAAAATTATTTGGTCTGTTGGAGTGCTTGAGAAAGCTATACTACGGTGGCGCTTAAAGAGAAAAGGCTTTCGTGGGCTTCAGGTTGAACCTGTGGAACCAATTGCAGAGGTAAGACAGGAAAGTGATACCGAGGAAGACTTTTATCGTACAAGCCAGAAACAAGCAAGTGAGCGTGTTGAGAGATCTGTTGTACGAGTTCAGGCCTTGTTTCGTTCAAGGAAAGCACAAGAAGACTATCAGAAAATGAAGATGGCCCATCTGGAAGCAATGCTGGAATATGATGGAGTTTTCGATCCTGATAGTGATATGCGTAGTTGA 2781 41.53 MDNSLQGMLVGSEIHGFHTLKDLDVGNIMEEAKMRWLRPNEIHAILCNNKYFSIKVKPVHLPPGGTIELFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDTPTFVRRCYWLLDKSLEHIVLVHYRETQELQGSPATTVNSNSSSVSDHSASWRFSEELDSGTDQALYVGENVLLERSNKLTAKHYEQRLHEINTLEWDELLVTDDLSNMPKGGDKVLGFHQQNQVAANDSTVGGGDTLLEEISTFDNVSGSIGRNNTNHFGLPNSSYISTMVSQLNSNAQKGNTIAMASNVPLDIMANEGLQSQDSFGRWINDIISDSPGSVDDPVFESSILPHYDEFTSATINHHASSVPEQMFTITDISPGWAFTAEKTKILITGFFHEEFAHLAKSNLLCLCGDVCIPTEVVQLGVYRCLVPPHPPGCVNIYLSLDGHKPISQVMNFEYRNQLLDGSGVSLDEKERWEEFEVQMRLLGLLFSTSKSLNILSGKVSQNAQKVARNFAQKTSNIANSWAYLHKSIQDNKISFPLAKDGLLELILRNRVREWLLERIIEGSKKSTEFDAYGQGVIHLCAILGYSWAIQLFAWSGLTLDFRDKSGWTALHWAAYCGREKMVAVLLHAGAKPNLVTDPTSENPGGCTAADLAYVKGHDGLAAYLSEKALVAHFQEMSIAGNISGTLQINTTERESVNPENLSEEQLYMKDTLAAYRTAADAAARINAAFREHSYKQRTKEVQVSTPEMEARNIIAAMKIQHAFRNYEMRRKMAAAAHIQHRFRTWKMRKDFLNTRRQAIRIQAAFRGFQARRHYRKIIWSVGVLEKAILRWRLKRKGFRGLQVEPVEPIAEVRQESDTEEDFYRTSQKQASERVERSVVRVQALFRSRKAQEDYQKMKMAHLEAMLEYDGVFDPDSDMRS 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13857554 13875921 - Bda017255.2 Bda03g01181 4440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01181 926 ProSiteProfiles IQ motif profile. 800 824 IPR000048 GO:0005515
Bda03g01181 926 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Bda03g01181 926 SMART iq_5 879 901 IPR000048 GO:0005515
Bda03g01181 926 SMART iq_5 776 798 IPR000048 GO:0005515
Bda03g01181 926 SMART iq_5 799 821 IPR000048 GO:0005515
Bda03g01181 926 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 920 - -
Bda03g01181 926 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 16 920 - -
Bda03g01181 926 Pfam IPT/TIG domain 374 460 IPR002909 -
Bda03g01181 926 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Bda03g01181 926 Gene3D - 778 824 - -
Bda03g01181 926 ProSiteProfiles Ankyrin repeat profile. 611 643 IPR002110 GO:0005515
Bda03g01181 926 SUPERFAMILY E set domains 374 461 IPR014756 -
Bda03g01181 926 SMART CG_1_2 28 146 IPR005559 GO:0003677
Bda03g01181 926 SUPERFAMILY Ankyrin repeat 571 673 IPR036770 -
Bda03g01181 926 Pfam IQ calmodulin-binding motif 802 821 IPR000048 GO:0005515
Bda03g01181 926 Gene3D - 544 681 IPR036770 -
Bda03g01181 926 ProSiteProfiles IQ motif profile. 881 909 IPR000048 GO:0005515
Bda03g01181 926 ProSiteProfiles Ankyrin repeat region circular profile. 611 639 - -
Bda03g01181 926 Pfam Ankyrin repeats (3 copies) 560 640 IPR002110 GO:0005515
Bda03g01181 926 Gene3D Immunoglobulins 368 464 IPR013783 -
Bda03g01181 926 SMART ANK_2a 611 640 IPR002110 GO:0005515
Bda03g01181 926 SMART ANK_2a 650 679 IPR002110 GO:0005515
Bda03g01181 926 ProSiteProfiles IQ motif profile. 761 787 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01181 K21596 CAMTA; calmodulin-binding transcription activator - fve:101314356 1237.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00957 Bda-Chr3:8670113 Bda03g01181 Bda-Chr3:13857554 2.69E-30 dispersed
Bda03g01181 Bda-Chr3:13857554 Bda15g00806 Bda-Chr15:12049284 3.06E-42 dispersed
Bda03g01166 Bda-Chr3:13068235 Bda03g01181 Bda-Chr3:13857554 0 transposed
Bda08g00378 Bda-Chr8:3870823 Bda03g01181 Bda-Chr3:13857554 0 transposed
Bda03g01181 Bda-Chr3:13857554 Bda08g00311 Bda-Chr8:3247593 1.31E-19 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00806 . 1 1073 CAMTA Transcription Factor Family AT5G64220 51.9 6.8e-268 920.6
Bda03g01181 . 28 919 CAMTA Transcription Factor Family AT3G16940 53.7 7.4e-262 900.2
Bda03g01166 BCT 28 652 CAMTA Transcription Factor Family AT3G16940 54.8 1.6e-192 669.8
Bda03g01181 . 7 635 CAMTA Transcription Factor Family AT4G16150 55.7 4.2e-205 711.8
Bda08g00378 BCT 9 660 CAMTA Transcription Factor Family AT4G16150 53.6 1.1e-200 697.2
Bda03g01166 BCT 49 377 CAMTA Transcription Factor Family AT4G16150 53.5 5.8e-106 382.5
Bda15g00806 . 1 1073 CAMTA Transcription Factor Family AT5G64220 51.9 6.8e-268 920.6
Bda03g01181 . 7 635 CAMTA Transcription Factor Family AT4G16150 55.7 4.2e-205 711.8
Bda08g00378 BCT 9 660 CAMTA Transcription Factor Family AT4G16150 53.6 1.1e-200 697.2
Bda03g01166 BCT 49 377 CAMTA Transcription Factor Family AT4G16150 53.5 5.8e-106 382.5
Bda03g01181 . 28 919 CAMTA Transcription Factor Family AT3G16940 53.7 7.4e-262 900.2
Bda03g01166 BCT 28 652 CAMTA Transcription Factor Family AT3G16940 54.8 1.6e-192 669.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15732 PF03859 CG-1 3.60E-44 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01181 Bda_Chr03 FPKM 100.372162 98.882004 57.310524 58.441853 34.402786 37.691719 40.027763 34.908939 31.821985