Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01181 ATGGATAATAGCCTTCAAGGAATGCTTGTTGGTTCGGAGATTCATGGATTTCATACGTTGAAAGACTTGGATGTGGGGAACATTATGGAGGAAGCAAAAATGAGATGGCTACGACCGAATGAAATTCATGCTATACTCTGTAATAACAAATACTTCAGCATCAAGGTCAAGCCAGTGCACTTGCCCCCAGGTGGCACTATAGAGTTATTTGATCGCAAGATGCTTAGGAACTTCAGGAAAGATGGTCATAACTGGAAAAAGAAAAAGGATGGCAAGACCGTTAAGGAAGCACATGAACACCTGAAGGTTGGTAATGAAGAAAGGATCCATGTATACTATGCACATGGACAGGATACTCCAACCTTCGTCCGTAGGTGTTATTGGCTACTTGATAAGAGTCTGGAACACATAGTTCTTGTTCATTATCGTGAAACTCAAGAGTTGCAGGGTTCTCCAGCAACCACAGTGAATTCTAATTCTAGTTCTGTCTCTGACCATTCTGCCTCCTGGCGTTTTTCGGAAGAACTAGATTCTGGGACTGACCAAGCTCTATATGTTGGTGAAAATGTACTTCTAGAGCGTAGTAATAAGTTAACTGCGAAGCATTATGAGCAAAGACTTCATGAAATTAACACGCTTGAATGGGATGAGCTTCTTGTAACAGATGATCTTTCCAACATGCCTAAAGGAGGAGACAAAGTCTTAGGTTTTCACCAACAGAATCAAGTTGCGGCAAATGATTCCACTGTTGGAGGAGGCGACACGTTGTTGGAGGAAATTTCTACATTTGACAATGTCAGTGGATCCATTGGGAGAAATAACACAAATCATTTTGGTTTGCCAAATAGCTCCTACATATCTACTATGGTTAGTCAATTAAATTCAAATGCACAGAAAGGGAATACCATTGCAATGGCCTCCAATGTACCCTTAGATATTATGGCCAACGAGGGGTTGCAAAGTCAGGATAGCTTTGGCCGGTGGATAAATGATATTATCTCTGACTCTCCTGGTTCTGTAGATGATCCAGTTTTTGAGTCCTCCATTTTACCTCATTATGATGAATTTACCTCTGCTACGATAAATCATCATGCATCTTCTGTGCCAGAGCAAATGTTTACCATAACTGATATCTCTCCTGGATGGGCATTTACTGCAGAAAAAACCAAGATTTTAATAACTGGATTTTTTCATGAAGAGTTTGCTCATCTGGCTAAGTCCAATTTGTTGTGTCTCTGTGGCGATGTTTGTATTCCTACAGAAGTCGTTCAACTTGGAGTTTATCGTTGCCTGGTACCTCCACATCCACCTGGATGTGTAAATATCTATCTCAGTTTAGATGGTCATAAACCAATCAGCCAAGTTATGAATTTTGAGTATCGCAACCAATTATTGGATGGTTCAGGAGTTTCTTTAGACGAAAAGGAAAGGTGGGAGGAGTTTGAAGTTCAGATGCGGCTTCTTGGTTTGCTTTTCTCTACATCGAAGAGCCTGAACATTCTGTCTGGTAAAGTATCACAAAATGCCCAAAAGGTAGCGAGAAACTTTGCTCAAAAAACATCTAACATTGCTAATAGTTGGGCTTATTTGCACAAGTCAATTCAAGATAACAAAATTTCGTTTCCTCTAGCAAAAGATGGCCTATTGGAACTTATTTTGAGGAACAGAGTAAGGGAATGGCTGTTAGAAAGGATTATTGAAGGCTCCAAGAAGAGCACTGAATTTGATGCTTACGGTCAAGGAGTAATACACTTGTGTGCCATCCTGGGATATTCATGGGCTATACAATTATTTGCTTGGTCAGGTTTAACATTGGATTTTCGGGACAAATCTGGATGGACAGCTCTTCACTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAGTTCTTCTACATGCTGGAGCAAAGCCAAACTTGGTTACAGACCCAACCTCAGAAAATCCTGGGGGATGCACAGCTGCTGATCTTGCATATGTAAAGGGTCATGATGGCTTGGCTGCCTATCTTTCAGAAAAGGCGTTAGTAGCTCATTTCCAGGAAATGAGTATAGCTGGAAATATAAGTGGTACACTGCAAATCAACACAACTGAGAGGGAGAGTGTAAACCCTGAGAATCTCAGTGAGGAGCAGCTATATATGAAAGATACTTTGGCAGCCTACAGAACGGCTGCTGATGCAGCAGCACGTATAAATGCTGCATTTCGCGAGCATTCTTATAAGCAAAGAACTAAAGAAGTTCAGGTTTCTACTCCAGAGATGGAAGCACGCAATATTATTGCAGCTATGAAAATTCAGCATGCATTCCGCAATTATGAAATGCGACGAAAAATGGCAGCTGCTGCTCATATACAACACAGATTCCGTACTTGGAAAATGCGTAAAGATTTCCTTAACACGCGACGTCAAGCTATAAGAATTCAAGCTGCATTTCGAGGCTTCCAAGCACGGAGGCATTACCGTAAAATTATTTGGTCTGTTGGAGTGCTTGAGAAAGCTATACTACGGTGGCGCTTAAAGAGAAAAGGCTTTCGTGGGCTTCAGGTTGAACCTGTGGAACCAATTGCAGAGGTAAGACAGGAAAGTGATACCGAGGAAGACTTTTATCGTACAAGCCAGAAACAAGCAAGTGAGCGTGTTGAGAGATCTGTTGTACGAGTTCAGGCCTTGTTTCGTTCAAGGAAAGCACAAGAAGACTATCAGAAAATGAAGATGGCCCATCTGGAAGCAATGCTGGAATATGATGGAGTTTTCGATCCTGATAGTGATATGCGTAGTTGA 2781 41.53 MDNSLQGMLVGSEIHGFHTLKDLDVGNIMEEAKMRWLRPNEIHAILCNNKYFSIKVKPVHLPPGGTIELFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDTPTFVRRCYWLLDKSLEHIVLVHYRETQELQGSPATTVNSNSSSVSDHSASWRFSEELDSGTDQALYVGENVLLERSNKLTAKHYEQRLHEINTLEWDELLVTDDLSNMPKGGDKVLGFHQQNQVAANDSTVGGGDTLLEEISTFDNVSGSIGRNNTNHFGLPNSSYISTMVSQLNSNAQKGNTIAMASNVPLDIMANEGLQSQDSFGRWINDIISDSPGSVDDPVFESSILPHYDEFTSATINHHASSVPEQMFTITDISPGWAFTAEKTKILITGFFHEEFAHLAKSNLLCLCGDVCIPTEVVQLGVYRCLVPPHPPGCVNIYLSLDGHKPISQVMNFEYRNQLLDGSGVSLDEKERWEEFEVQMRLLGLLFSTSKSLNILSGKVSQNAQKVARNFAQKTSNIANSWAYLHKSIQDNKISFPLAKDGLLELILRNRVREWLLERIIEGSKKSTEFDAYGQGVIHLCAILGYSWAIQLFAWSGLTLDFRDKSGWTALHWAAYCGREKMVAVLLHAGAKPNLVTDPTSENPGGCTAADLAYVKGHDGLAAYLSEKALVAHFQEMSIAGNISGTLQINTTERESVNPENLSEEQLYMKDTLAAYRTAADAAARINAAFREHSYKQRTKEVQVSTPEMEARNIIAAMKIQHAFRNYEMRRKMAAAAHIQHRFRTWKMRKDFLNTRRQAIRIQAAFRGFQARRHYRKIIWSVGVLEKAILRWRLKRKGFRGLQVEPVEPIAEVRQESDTEEDFYRTSQKQASERVERSVVRVQALFRSRKAQEDYQKMKMAHLEAMLEYDGVFDPDSDMRS 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13857554 13875921 - Bda017255.2 Bda03g01181 4440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01181 926 ProSiteProfiles IQ motif profile. 800 824 IPR000048 GO:0005515
Bda03g01181 926 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Bda03g01181 926 SMART iq_5 879 901 IPR000048 GO:0005515
Bda03g01181 926 SMART iq_5 776 798 IPR000048 GO:0005515
Bda03g01181 926 SMART iq_5 799 821 IPR000048 GO:0005515
Bda03g01181 926 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 920 - -
Bda03g01181 926 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 16 920 - -
Bda03g01181 926 Pfam IPT/TIG domain 374 460 IPR002909 -
Bda03g01181 926 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Bda03g01181 926 Gene3D - 778 824 - -
Bda03g01181 926 ProSiteProfiles Ankyrin repeat profile. 611 643 IPR002110 GO:0005515
Bda03g01181 926 SUPERFAMILY E set domains 374 461 IPR014756 -
Bda03g01181 926 SMART CG_1_2 28 146 IPR005559 GO:0003677
Bda03g01181 926 SUPERFAMILY Ankyrin repeat 571 673 IPR036770 -
Bda03g01181 926 Pfam IQ calmodulin-binding motif 802 821 IPR000048 GO:0005515
Bda03g01181 926 Gene3D - 544 681 IPR036770 -
Bda03g01181 926 ProSiteProfiles IQ motif profile. 881 909 IPR000048 GO:0005515
Bda03g01181 926 ProSiteProfiles Ankyrin repeat region circular profile. 611 639 - -
Bda03g01181 926 Pfam Ankyrin repeats (3 copies) 560 640 IPR002110 GO:0005515
Bda03g01181 926 Gene3D Immunoglobulins 368 464 IPR013783 -
Bda03g01181 926 SMART ANK_2a 611 640 IPR002110 GO:0005515
Bda03g01181 926 SMART ANK_2a 650 679 IPR002110 GO:0005515
Bda03g01181 926 ProSiteProfiles IQ motif profile. 761 787 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00957 Bda-Chr3:8670113 Bda03g01181 Bda-Chr3:13857554 2.69E-30 dispersed
Bda03g01181 Bda-Chr3:13857554 Bda15g00806 Bda-Chr15:12049284 3.06E-42 dispersed
Bda03g01166 Bda-Chr3:13068235 Bda03g01181 Bda-Chr3:13857554 0 transposed
Bda08g00378 Bda-Chr8:3870823 Bda03g01181 Bda-Chr3:13857554 0 transposed
Bda03g01181 Bda-Chr3:13857554 Bda08g00311 Bda-Chr8:3247593 1.31E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15732 PF03859 CG-1 3.60E-44 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01181 K21596 - fve:101314356 1237.25