Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01188 TTAAAACCCAAAAAGAAGAATCAGAAGAAGGAAAAGGAGGCAAGAGTTGCATTCATGACAAAGAGTGAGGTGGATCACCTTGATGATGGCTACAGATGGCGAAAGTATGGCCAAAAAGCTGTGAAAAATAGCCCCTATCCAAGAAGCTATTATCGGTGCACCGCCCCGGGATGTCGAGTGAAGAAGAGAGTCGAGCGGCTTTCCAATGACCCTTCCACCATCGTCACCACCTATGAAGGTCAACACAGCCATCCAGCCCCGTTAACCCCTCGTGGAATCGTCGAAATTTTGCCGGAATCTACCCCCTTTCCCTCGACTAATTGGCCAACACCATTTTCACTATCCCAATATCTACTCCACCGACAAAATCGAGGAGGAGGAGGAATGAGTAATAGCTCATCCTCTTCTCTGCACATTGCCGCAAACCCTTCTCCCATCAGTCCTATTCCTACAATGTCTGCTTTTGCTCGCCAACAAAGACAACAATTTGGACCATCTTTGGCTTCTGATTTGCTCACAGACCATGGCCTTCTTCAAGATGTAGTGCCATTGCAGATGCGAGGGGAGTTGATGAAAGATGAGAAAATTTAA 591 46.87 LKPKKKNQKKEKEARVAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTAPGCRVKKRVERLSNDPSTIVTTYEGQHSHPAPLTPRGIVEILPESTPFPSTNWPTPFSLSQYLLHRQNRGGGGMSNSSSSSLHIAANPSPISPIPTMSAFARQQRQQFGPSLASDLLTDHGLLQDVVPLQMRGELMKDEKI 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14265918 14266577 + Bda017266.1 Bda03g01188 4447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01188 196 SUPERFAMILY WRKY DNA-binding domain 19 87 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda03g01188 196 SMART WRKY_cls 27 86 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda03g01188 196 ProSiteProfiles WRKY domain profile. 22 87 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda03g01188 196 Pfam WRKY DNA -binding domain 28 85 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda03g01188 196 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 1 183 - -
Bda03g01188 196 Gene3D WRKY domain 11 88 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda03g01188 196 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 183 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g01188 Bda11g00494 CCT
Bda03g01188 Bda13g00224 CCT
Bda03g01188 Bda11g00494 ECH
Bda03g01188 Bda13g00224 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01188 Bda-Chr3:14265918 Bda11g00494 Bda-Chr11:5270703 7.51E-53 dispersed
Bda03g01188 Bda-Chr3:14265918 Bda13g00224 Bda-Chr13:2849666 5.17E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15733 PF03106 WRKY 9.20E-27 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01188 - - hbr:110669417 199.904