Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01189 ATGACTCACCATGAGAACCGCCGTAGCCCTGGTGATTTCAGAGTCGGAGGTAACGGTGGTTACCACCGTTTTTTCGACAGTCCGCCCGGTCATTCTCCTGGAAGTGGCAGTGGATTCTGGCCAATGGGTGGGGGAGGTGGTGGATTCCGCCCGATTGGTGCCGATGCTGGAGGATATGGGTCTAATTACCAGCCATCGCCTATGATAGGACTTAAACGAGGGTATCCGTTTATGGGTCGGGGAGGATCTCCTGATAATTTTGATAATAGTAATTTTGCAAAGCTTTTTGTTGGATCCGTTCCGAGGACAGCCACAGAAGAAGATATTCGTCCATTGTTTGAAAAGCATGGAAATGTGATAGAGGTAGCTTTGATTAAAGATAAGAGGACGGGGCAGCAACAAGGATGTTGTTTTATAAAATATGCAACATCAGAGGAAGCTGATAGGGCAATTCGGGCTTTGCACAATCAACATACGCTTCCTGGAAGTATGGGACCCATTCAAGTTCGTTATGCAGATGGAGAACGGGAGAGACTAGGTGCTGTTGAGTTCAAATTGTTCGTTGGCTCGTTGAACAAACAAGCTACAGAAAAGGAAGTTGAGGAAATATTTTCTCCATATGGCCGAGTGGAAGATGTTTATATTATGCGTGATGAATTCAAGCAAAGTCGTGGATGTGGATTCGTTAAGTATGGCAACAGAGATATGGCATTGATGGCTATAAAGGATCTTCATGGAATCTATGTGATGAGGGGTTGTGATCAACCATTAACTGTTCGATTTGCTGATCCTAAGAGGCCTAGATCTGGAGATTCAAGGAGTGGTTTTGGTGGCCCTGGTCCTCACTTGCAATCACCATTGATTGATGATGACATTCGTGGCTTTAAGGGTCAGTTGCCTCTAAGGTCTAGTGACATGGCGCTTCCTTTGAATTCGGGTGGTCCTGGAGGTTCCCTTCAGGGGTCGATAAATTCATCTTCTTCGACACCAAAGCAGTCCCCAGTACAAGCTCCTCCAGTTGGGCAGCAAGTATCATCATTGCAGAAGCCTTTTCAGTCATCACCCCAATTCCCACCTTCTGCTCAATTACAACGTCAAACTTCAGCCTCCTATTCACAACCGCAGGCATCCCTTTCATCAGTTCGGCCTCTTGGTGTGCAACAGTATCCTCTTTCTTCCGGTCAGATCTCATACAGCCAAGCTTCAACTTCCCAACAGCCTACTTGTGTAGTAAGTGGGCAGTCAGGTTCTCAGACTTCAGTCCCACAGCAGGCCTCACTCGTTACAGGGTTGCAAACACCTTTGAGTATCAACCTGCAACCTCATACTGCATCAACTCCCATCAATCAACAGCAGCATCCTGCACCTGTTCATCAATCTCCTTCTCAATTGGCTCAGATGCTATCACAACAAACACAAACTTTGCAGGCCAGTTTTCAGTCTTCACAGCAAGCATTCTCCCAGCTGCAACAGCAGTTGCAGCAGATGCAACCTTCGAATCAAGGCTTATCTCCACAGCAAAATTCCCAGGCTTCTAAAGTGCAGTGGACTGGAAATGTGCCGCATGCCGCTGGTGGTGGCACACTTGCTGCAAATGTATCTTCATCCACACCGGGTGTGTTTGCTGTTTCTTCAACTGCTCAGGCTGTAGTTCCAGCAAAATGTAATTGGACAGAACACACCTCCCCTGATGGTTATAAGTACTATTATAATGGTGTGACTGGTGAAAGTAGGTGGGAGAAACCTGAAGAGCTTACATTACTTGAGCAGCAGCAACAAAAGCAGTCAGTTCAGCCGTCTCAAACCCAGGCCTTTCCACCATCCTCATCTTCTCTATCGCTCCCTCAAAACCAACAGATACAGTTTCAAGGTCCTCAACAATCCCATATCCGAAGTCATCAGCAGTTGCACATACAGCAGCCTTCTATATTATCATCATACCAAGTTTCTGGAGTTGCGAGTCTCCAAAATATTCAGGAACCCCAGGCGTCTCAGGATTGGATGTGGAAGAATAATCCTGCAGGAGCTTGA 2031 46.68 MTHHENRRSPGDFRVGGNGGYHRFFDSPPGHSPGSGSGFWPMGGGGGGFRPIGADAGGYGSNYQPSPMIGLKRGYPFMGRGGSPDNFDNSNFAKLFVGSVPRTATEEDIRPLFEKHGNVIEVALIKDKRTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGSMGPIQVRYADGERERLGAVEFKLFVGSLNKQATEKEVEEIFSPYGRVEDVYIMRDEFKQSRGCGFVKYGNRDMALMAIKDLHGIYVMRGCDQPLTVRFADPKRPRSGDSRSGFGGPGPHLQSPLIDDDIRGFKGQLPLRSSDMALPLNSGGPGGSLQGSINSSSSTPKQSPVQAPPVGQQVSSLQKPFQSSPQFPPSAQLQRQTSASYSQPQASLSSVRPLGVQQYPLSSGQISYSQASTSQQPTCVVSGQSGSQTSVPQQASLVTGLQTPLSINLQPHTASTPINQQQHPAPVHQSPSQLAQMLSQQTQTLQASFQSSQQAFSQLQQQLQQMQPSNQGLSPQQNSQASKVQWTGNVPHAAGGGTLAANVSSSTPGVFAVSSTAQAVVPAKCNWTEHTSPDGYKYYYNGVTGESRWEKPEELTLLEQQQQKQSVQPSQTQAFPPSSSSLSLPQNQQIQFQGPQQSHIRSHQQLHIQQPSILSSYQVSGVASLQNIQEPQASQDWMWKNNPAGA 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14292469 14306227 - Bda017267.1 Bda03g01189 4448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01189 676 Pfam WW domain 556 582 IPR001202 GO:0005515
Bda03g01189 676 MobiDBLite consensus disorder prediction 590 635 - -
Bda03g01189 676 Gene3D - 552 601 - -
Bda03g01189 676 SUPERFAMILY WW domain 556 589 IPR036020 GO:0005515
Bda03g01189 676 Gene3D - 182 270 IPR012677 -
Bda03g01189 676 PRINTS Paraneoplastic encephalomyelitis antigen family signature 93 108 IPR002343 GO:0003723|GO:1990904
Bda03g01189 676 PRINTS Paraneoplastic encephalomyelitis antigen family signature 189 204 IPR002343 GO:0003723|GO:1990904
Bda03g01189 676 PRINTS Paraneoplastic encephalomyelitis antigen family signature 245 262 IPR002343 GO:0003723|GO:1990904
Bda03g01189 676 PRINTS Paraneoplastic encephalomyelitis antigen family signature 204 216 IPR002343 GO:0003723|GO:1990904
Bda03g01189 676 PANTHER TRANSFORMER-2-RELATED 61 273 - -
Bda03g01189 676 PANTHER TRANSFORMER-2-RELATED 281 650 - -
Bda03g01189 676 MobiDBLite consensus disorder prediction 1 43 - -
Bda03g01189 676 MobiDBLite consensus disorder prediction 315 376 - -
Bda03g01189 676 MobiDBLite consensus disorder prediction 439 469 - -
Bda03g01189 676 MobiDBLite consensus disorder prediction 490 520 - -
Bda03g01189 676 ProSiteProfiles WW/rsp5/WWP domain profile. 551 584 IPR001202 GO:0005515
Bda03g01189 676 SMART ww_5 552 584 IPR001202 GO:0005515
Bda03g01189 676 SMART rrm1_1 185 260 IPR000504 GO:0003723
Bda03g01189 676 SMART rrm1_1 94 170 IPR000504 GO:0003723
Bda03g01189 676 SUPERFAMILY RNA-binding domain, RBD 184 284 IPR035979 GO:0003676
Bda03g01189 676 CDD WW 554 584 IPR001202 GO:0005515
Bda03g01189 676 MobiDBLite consensus disorder prediction 260 376 - -
Bda03g01189 676 ProSitePatterns WW/rsp5/WWP domain signature. 557 582 IPR001202 GO:0005515
Bda03g01189 676 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 174 IPR000504 GO:0003723
Bda03g01189 676 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 264 IPR000504 GO:0003723
Bda03g01189 676 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 61 273 - -
Bda03g01189 676 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 281 650 - -
Bda03g01189 676 SUPERFAMILY RNA-binding domain, RBD 43 172 IPR035979 GO:0003676
Bda03g01189 676 MobiDBLite consensus disorder prediction 490 517 - -
Bda03g01189 676 Gene3D - 85 181 IPR012677 -
Bda03g01189 676 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 159 IPR000504 GO:0003723
Bda03g01189 676 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 250 IPR000504 GO:0003723
Bda03g01189 676 CDD RRM2_FCA 185 264 IPR034645 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01189 - - - vvi:100255122 639.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01189 Bda-Chr3:14292469 Bda12g00043 Bda-Chr12:271111 2.54E-46 dispersed
Bda03g01189 Bda-Chr3:14292469 Bda05g00406 Bda-Chr5:49367734 4.56E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01189 Bda_Chr03 FPKM 5.579982 6.53875 4.64967 5.420218 7.668725 5.334891 7.15973 1.938174 1.926001