Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01197 ATGTTTGCTTCAAGTATGGATTCTCCCCGGGAATCTGGTAGAGTTGCTGGCACCATGTTAATGCCTTTGAGATTTGTATGGCCATATGGGGGAGGAAATGTATTTCTAAGTGGTTCTTTTACGAGGTGGTCGGAGCTTGTACGAATGACACCTGTTGAGGGCTGCCCTACTGTTTTTCAGGCTATTTGCAGCTTATCGCCTGGATATCACCAGTTCAAATTTTTTGTTGATGGAGATTGGCGGCACGATGAGCATCAGCCTCATGTGTCTGGTGAATATGGGATTGTGAATACTGTTCTCTTAGCTACAGAGGCCAATTTCATTCCTGCAATATCAAATTCAGAAATTCCTGGATCCAACATGGATGTGGATAATGAGGCCTTCCGACGTTTGGTTCGAATAACTGATGGGACCATGACAGAGGCATTACAGAGGATTTCAGAGACTGATATTCAAAGCTCACGCCACCGTATATCAGTGTTCTTGTCTACAAGTACTGTTTATGAGTTGCTTCCTGAGTCAGGAAAGGTTGTGGCCTTAGATGTGGATTTGCCTGTAAAGCAAGCGTTTCACATATTGCATGAGCAGGGAATCTCTGTTGCTCCTCTTTGGGACTTTAGCAGGGGACAGTTTGTTGGAGTTCTTAGTGCATTGGATTTCATTTTAATTCTAAGAGAGCTTGGAAAGCGTGGCTCTAATCTAACTGAGGAAGAGCTTGAAACACATACCATATCTGCTTGGAAGGAGGGAAAAGCATATTTGAATGGCCAGGTTGATGGGAATGGGAGATTATTTTCACGACATCTCATACATGCTGGGCCATATGATAATATGAAAGATGTTGCATTGAAGATATTGCAGAATGAGGTGGCTACAGTTCCCGTCCTACATTCAGCCTCCGGAGATGGTTCTTTTCCACAGCTATTACATATTGCATCACTTTGTGGAATCCTTAAATATATTTGCAGGTATTTTAAACACTGTTCTGCTTTATTACCCATACTCCATGTTCCTATTTGTGCAATTCCTATCGGTACTTGGGTGCCGAAAATTGGTGAATCAGATCGAAGACCGTTAGCAATGTTGAGACCGAGTGCTTCTCTTAGTTCCGCTTTAAACTTGTTAGTCCAAGCTCAAGTTAGTTCGATACCAATAGTTGATGATAATGACTCATTGCTTGATATATATTGTCGAAGTGATATAACAGCTTTGGCTAAAGACAGAGCCTATGCACACATTAATCTGGATGAAATGACTATTCATCAGGCCTTGCAATTGGGGCAAGATTCATATTCTTCTTATGAGCAAAGAAGTCAAAGATGCCATATGTGTCTGCGATCTGATTCGTTTCATAAAGTTATGGAACGTTTGGCTGATACAGGTGTTAGACGCCTCATTGTTGTGGAAGCCGGGAGTAAGAGGGTAGAGGGCATTATTTCACTGACTGACATTTTCAAGTTTTTGTTCAAGTAG 1473 41.89 MFASSMDSPRESGRVAGTMLMPLRFVWPYGGGNVFLSGSFTRWSELVRMTPVEGCPTVFQAICSLSPGYHQFKFFVDGDWRHDEHQPHVSGEYGIVNTVLLATEANFIPAISNSEIPGSNMDVDNEAFRRLVRITDGTMTEALQRISETDIQSSRHRISVFLSTSTVYELLPESGKVVALDVDLPVKQAFHILHEQGISVAPLWDFSRGQFVGVLSALDFILILRELGKRGSNLTEEELETHTISAWKEGKAYLNGQVDGNGRLFSRHLIHAGPYDNMKDVALKILQNEVATVPVLHSASGDGSFPQLLHIASLCGILKYICRYFKHCSALLPILHVPICAIPIGTWVPKIGESDRRPLAMLRPSASLSSALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYAHINLDEMTIHQALQLGQDSYSSYEQRSQRCHMCLRSDSFHKVMERLADTGVRRLIVVEAGSKRVEGIISLTDIFKFLFK 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14510541 14518217 - Bda017280.1 Bda03g01197 4456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01197 490 Gene3D - 138 331 IPR046342 -
Bda03g01197 490 CDD E_set_AMPKbeta_like_N 22 100 - -
Bda03g01197 490 Gene3D Immunoglobulins 21 113 IPR013783 -
Bda03g01197 490 ProSiteProfiles CBS domain profile. 437 490 IPR000644 -
Bda03g01197 490 SUPERFAMILY E set domains 21 102 IPR014756 -
Bda03g01197 490 Coils Coil 489 490 - -
Bda03g01197 490 Pfam Glycogen recognition site of AMP-activated protein kinase 21 104 IPR032640 -
Bda03g01197 490 Pfam CBS domain 441 489 IPR000644 -
Bda03g01197 490 Pfam CBS domain 356 402 IPR000644 -
Bda03g01197 490 SUPERFAMILY CBS-domain pair 356 489 IPR046342 -
Bda03g01197 490 Gene3D - 337 490 IPR046342 -
Bda03g01197 490 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 488 - -
Bda03g01197 490 ProSiteProfiles CBS domain profile. 355 417 IPR000644 -
Bda03g01197 490 SMART cbs_1 440 489 IPR000644 -
Bda03g01197 490 SMART cbs_1 358 406 IPR000644 -
Bda03g01197 490 SMART cbs_1 176 225 IPR000644 -
Bda03g01197 490 SUPERFAMILY CBS-domain pair 152 327 IPR046342 -
Bda03g01197 490 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 488 - -
Bda03g01197 490 ProSiteProfiles CBS domain profile. 170 230 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01197 - - - csv:101215603 788.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01197 Bda-Chr3:14510541 Bda13g00180 Bda-Chr13:2307056 0 dispersed
Bda01g01276 Bda-Chr1:48158877 Bda03g01197 Bda-Chr3:14510541 1.82E-06 transposed
Bda01g02250 Bda-Chr1:58278473 Bda03g01197 Bda-Chr3:14510541 2.07E-06 transposed
Bda01g02278 Bda-Chr1:59148743 Bda03g01197 Bda-Chr3:14510541 7.22E-06 transposed
Bda03g01197 Bda-Chr3:14510541 Bda08g00284 Bda-Chr8:2949382 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g3 . . Bda03g01197 . Bpe04g01126 . . . . . Cma06g01582 . . . Sed02g0487 Cpe08g00136 . Bhi01g01119 Tan10g1105 Cmetu06g2035 . . . . . . . . . . . Cone14ag0686 . . . Lsi05g01396 . . Cme06g00822 . . . . . . . . . Cmo06g01578 . . . . . . . . . . . . . . Cla05g00729 Cam05g0798 Cec05g0805 Cco05g0807 Clacu05g0787 Cmu05g0750 Cre05g0826 . Csa03g01545 Chy06g00781 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004087 3 2 2 1 3 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 3 3 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01197 Bda_Chr03 FPKM 40.688179 40.090816 17.772408 16.289402 18.123745 19.679735 18.499252 10.907275 9.747877