Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01199 CAGATGAATATGGTTCAAGAAAATAATGACAATGGGGATTTCCACGAAGAAGCATCACCAGAGCAATCGGTTTCTGCAGAAAATTCTGATACATGCGTTGCATTTGGAGAACCTGAGGTTTTGCCTCGAGTTGGTGAAGAATATCAAGTAGAGGTTCCGCCGCTCATGACAAAGTTAGATTATGTCTCAATTGCTAGCATCAAACACGACAGAGAAGTTCATAATGATTTTCGTATGGGACTAGCCATACCCGTAATGTGGATTAACGAGGACAAGACAGTAAAACAGGAGTCTCTCAAACATGAGATCTTCACAGACGATGATTTGAGAGAAAATATTTCAGGCCCGGATTTGACACAGAATGAGCTAGTTTTGGAACAAGAATTTGATATTAAAATGTGTGGCAATATGGTTCCCGGCTCCTCTAGTGAATCGTGGAGTTACATGGAAGAAGAAAGCTTTATTCTCAGTTTGTATATCTTTGGAAAAAACCTTGTTCATGTGACGAAGTTTATGGAGGGTAGAAAAATGGGGGATGTTCTTTTATTCTATTACGGCAAGTTTTATCGATCTGAAAAACATCGTAGATGGTCAGAATGTCGGAAAGTGAGAAGTAGAAGATGTGTATATGGACAGAGATTATTTACAGGTTGGAGACAGCATGAATTGTTATCTCGCTTGTTTTCCCACGGATCGGAAGAAAGAAAAAGTGCATTGCTTGAGGTCTCAAAGACGTTTACTGAGAGTAAAATTCGATTCGAGGAATATGTATTCGCATTAAAGGCTATAGTTGGGTTAAAAGATCTGATAGATGCTGTGGGAATTGGAAAAGGGAAGCAAGATCTCTCAGGTTTTGCCATGGATCCATTGAAGTCCATTCAGGCTGCTTCAATTCGACCGGAAATACCGAGTGGGAAAGCATGTTCGACACTTACTCCATCTGAGATTGTTCAGTTTCTCACAGGTGACTTCAGGTTGAGCAAAGCCCGAACGAGTGATCTCTTTTGGGAAGCTGTTTGGCCTCGTTTACTTGATCGAGGGTGGCATTCTGAGCAGCCAACAAATCACGGTTTTGCCATTGGTACGAAGCAGTCTCTCGTTTTTCTTATACCGGGAATTAAAAAGTTTGTGGGTGGAAAATTGGTGAAAGGAAATCACTATTTTGATTCTGTCAGTGATGTGTTGAGTAAAGTTGCTTCGAATCCATGGATGCTAGAGCTTGAGAATGATTCGGTCAGAGCAGGAGAAAATGCAGAAGAAAACAGGTGGGCTCAAGAAATGAAGATGGATAAAGAGGATGTACTTAATCAGCACCGCCATTGTTATCTTCAACCCAGAACTCCAAATCATGATTCAGATGCCACCAAGTTTACAGTTGTTGACACCAGTCTTGCCTGTGGGAAAAGCTTCAAAATTAGAGAACTGAGAAGTTTACCAGCTGGAATTATGAGAAATTCTAATGGCAGAAGCAGAAGTGACTCCGAAGATAGTAACTCGGTTTCTTCTGAGAACTCCATCGACAAGTTAAATTTTGACGAAAATAATGATAAAATCACTATCTCTTTGGATCGCAAAGATTTTTCAGGAGGTGGTTCCAAACAACGGCCTCAATCATCAAGCCGAAGAACTAGACCCGCTGGGAAAAACAAAGTAAAAAAAAGACGCCAACAAGGTTTGAATGTGTGTGATCAGTCAGAGACCAGTCAAAAAACAAAACAAGAGGAAGCTACTTGTTCTACTGATAGTTTTTATTACAATGAGAATAGTCACTTCCAAGTTGATCAGCTTCAGGAGAAATCTTCGTCTAATTCTTCGATAAGGGAACACGCACAAGATATGTCTCATCCCCGTGAATTGATCGATCTGAATGTGCCAATTCCTCTGGACGAAGAAATTAATGAGCTATCCGGAGATGGACATGGCCGAACCAATCAGGTATTACTCTGTCCAAACACGATTAAAACAACTCAAAATCATCAAAATTTGAGGAGACAGAGTACTAGAAACCGGCCCCCCACTACGAGAGCACTTGAAGCTCTTGCTTTAGGATTTCTCGACGTAAAGCAGAAACGAAAGGCTAAGGACGCCTTTCGAGAAGAGCACTTGATGCTCGGACCATTGCGCCGTGCTCGTGCGAAGGTTAGATCTTCAGAGAACTCGAGGAGTATTACTGAAGATTCCAAAACAGAGGAAGCTGAAAACAGCATAAGCAATAGTAATTGTGAGTCCACCTTTGCTACGAAAGTTCAAAGCTTAGTGAATTAG 2265 41.19 QMNMVQENNDNGDFHEEASPEQSVSAENSDTCVAFGEPEVLPRVGEEYQVEVPPLMTKLDYVSIASIKHDREVHNDFRMGLAIPVMWINEDKTVKQESLKHEIFTDDDLRENISGPDLTQNELVLEQEFDIKMCGNMVPGSSSESWSYMEEESFILSLYIFGKNLVHVTKFMEGRKMGDVLLFYYGKFYRSEKHRRWSECRKVRSRRCVYGQRLFTGWRQHELLSRLFSHGSEERKSALLEVSKTFTESKIRFEEYVFALKAIVGLKDLIDAVGIGKGKQDLSGFAMDPLKSIQAASIRPEIPSGKACSTLTPSEIVQFLTGDFRLSKARTSDLFWEAVWPRLLDRGWHSEQPTNHGFAIGTKQSLVFLIPGIKKFVGGKLVKGNHYFDSVSDVLSKVASNPWMLELENDSVRAGENAEENRWAQEMKMDKEDVLNQHRHCYLQPRTPNHDSDATKFTVVDTSLACGKSFKIRELRSLPAGIMRNSNGRSRSDSEDSNSVSSENSIDKLNFDENNDKITISLDRKDFSGGGSKQRPQSSSRRTRPAGKNKVKKRRQQGLNVCDQSETSQKTKQEEATCSTDSFYYNENSHFQVDQLQEKSSSNSSIREHAQDMSHPRELIDLNVPIPLDEEINELSGDGHGRTNQVLLCPNTIKTTQNHQNLRRQSTRNRPPTTRALEALALGFLDVKQKRKAKDAFREEHLMLGPLRRARAKVRSSENSRSITEDSKTEEAENSISNSNCESTFATKVQSLVN 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14577694 14580316 + Bda017282.1 Bda03g01199 4458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01199 754 MobiDBLite consensus disorder prediction 558 576 - -
Bda03g01199 754 SUPERFAMILY Homeodomain-like 138 186 IPR009057 -
Bda03g01199 754 MobiDBLite consensus disorder prediction 483 508 - -
Bda03g01199 754 MobiDBLite consensus disorder prediction 509 523 - -
Bda03g01199 754 Coils Coil 754 754 - -
Bda03g01199 754 PANTHER ATROPHIN-RELATED 536 744 - -
Bda03g01199 754 MobiDBLite consensus disorder prediction 482 576 - -
Bda03g01199 754 MobiDBLite consensus disorder prediction 713 738 - -
Bda03g01199 754 PANTHER PROTEIN, PUTATIVE-RELATED 536 744 - -
Bda03g01199 754 PANTHER PROTEIN, PUTATIVE-RELATED 3 518 - -
Bda03g01199 754 MobiDBLite consensus disorder prediction 713 732 - -
Bda03g01199 754 MobiDBLite consensus disorder prediction 1 29 - -
Bda03g01199 754 PANTHER ATROPHIN-RELATED 3 518 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01199 - - - hbr:110642855 617.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01199 Bda-Chr3:14577694 Bda12g00415 Bda-Chr12:5015182 1.56E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g311 . Blo12g00019 Bda03g01199 . Bpe04g01130 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01530 . . . . . . Bpe05g00841 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001104 2 4 2 1 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 1 2 2 3 2 2 7 4 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01199 Bda_Chr03 FPKM 1994.450806 2213.828857 347.037872 352.371857 527.187195 514.238953 480.974243 115.780815 115.697777