Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01209 GTGGAACATGCTAATCTGGTTGGAACACTGATGGAATGTGAAGTAAAAATCACCATGCAAGATGGAGGAAAGAAGGTAGATTCTACATATTTCAAAAGCATGGTTGGAAGTTTGAGATACTTGACATGTACAAGACCAGATATTCTTTTTTCGGTTGGAATCATTAGTCGATTTATGGAGGAGCCGACAACAACACATTACAAAATGGCAAAGCGGATACTTCGCTACATCAAAGGGATGATCGGGTATGGTCTTTCCTATTTCTCTTTTAGTAATTTTGATATTACTAGTTATTGTGATAGTGATTGGAGTGGTGACTTGGATGATCGGAAGAGCACCACGGGGCCTGGTTCGAGGGAGTCTCTTCTTAGATGCTTCATAAAACGAAACCGATCCACGCAAACTTATTACCTTTTTCTCAGTTTAACTAATGCCCTCACTGATGATGGGAAGTTTCTTCTTGCTGCACGAAAATGTAGACGACCCACCTGTACGGATTATATCATCTCTACTCGTGCTGATGACATGTCCAAGGGGAGCACCACCTACGTTGGGAAATTAAGATCCAACTTTCTAGGAACCAAGTTTACAATTTTTGATGGGCAGCCGCCTCATGCGGGAGCGAAGATGACAAAAAGTCGCTCCACCAGGCTTGTAAATCTGAAACAAGTTTCACCCAAAGTTCCCGTAGGGAACTACCCAGTTGCTCACATCTCATATGAATTGAATGTACTGGGTTCAAGGCAAGTTTTAAATATAAATCATATCAAAGACTTTAACATGGGTCCAAGGAGAATGCAGTGCATCATGGACGCCATTCCTGCCTCTTCAATTGGACCTGGGGGAAAGGCTCCCACACAAACTGAGCTTTCACTTAACAATGTTGAATTTTTCCCATCACTCCCATATTTCCGGTCAAAGTCAATTCACTTGGATAATTATCTATCAGGACCTCTGACCAGTCAGAAAGATGAAATGCTGGTTTTGAGAAACAAGAACCCCAGGTGGCATGAGCAGTTACAATGCTGGTGCTTGAATTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAATTTTCAGTTAGTTGCTTCGCCAGAAAATGGACCAGCTGGACCAGAACATGAGAAAATCATCCTCCAATTTGGTAAAGTAGGGAAGGATTTATTTACAATGGATTATCGGTACCCAATCTCAGCATTCCTGGCTTTTGCAATCTGTCTTAGCAGCTTTGATACCAAGATCGCTTGTGAATGA 1254 42.03 VEHANLVGTLMECEVKITMQDGGKKVDSTYFKSMVGSLRYLTCTRPDILFSVGIISRFMEEPTTTHYKMAKRILRYIKGMIGYGLSYFSFSNFDITSYCDSDWSGDLDDRKSTTGPGSRESLLRCFIKRNRSTQTYYLFLSLTNALTDDGKFLLAARKCRRPTCTDYIISTRADDMSKGSTTYVGKLRSNFLGTKFTIFDGQPPHAGAKMTKSRSTRLVNLKQVSPKVPVGNYPVAHISYELNVLGSRQVLNINHIKDFNMGPRRMQCIMDAIPASSIGPGGKAPTQTELSLNNVEFFPSLPYFRSKSIHLDNYLSGPLTSQKDEMLVLRNKNPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDLFTMDYRYPISAFLAFAICLSSFDTKIACE 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14897856 14906677 + Bda017298.1 Bda03g01209 4468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01209 417 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 105 417 - -
Bda03g01209 417 PANTHER TUBBY-RELATED 105 417 - -
Bda03g01209 417 SUPERFAMILY Tubby C-terminal domain-like 105 417 IPR025659 -
Bda03g01209 417 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Bda03g01209 417 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Bda03g01209 417 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Bda03g01209 417 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Bda03g01209 417 PRINTS Tubby superfamily signature 395 417 IPR000007 -
Bda03g01209 417 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Bda03g01209 417 PRINTS Tubby superfamily signature 374 393 IPR000007 -
Bda03g01209 417 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Bda03g01209 417 Pfam Tub family 115 412 IPR000007 -
Bda03g01209 417 Gene3D Tubby Protein; Chain A 106 417 IPR025659 -
Bda03g01209 417 ProSitePatterns Tub family signature 2. 402 417 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01209 Bda-Chr3:14897856 Bda03g00391 Bda-Chr3:3234059 5.86E-112 dispersed
Bda02g00959 Bda-Chr2:49950985 Bda03g01209 Bda-Chr3:14897856 1.70E-13 transposed
Bda08g00922 Bda-Chr8:16979385 Bda03g01209 Bda-Chr3:14897856 1.34E-08 transposed
Bda08g00936 Bda-Chr8:17317053 Bda03g01209 Bda-Chr3:14897856 4.79E-17 transposed
Bda12g01059 Bda-Chr12:42342619 Bda03g01209 Bda-Chr3:14897856 2.13E-10 transposed
Bda15g00754 Bda-Chr15:11123829 Bda03g01209 Bda-Chr3:14897856 2.15E-09 transposed
Bda03g01209 Bda-Chr3:14897856 Bda08g00279 Bda-Chr8:2908572 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15734 PF01167 Tub 1.40E-102 CL0395 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01209 K19600 - jre:108995057 512.301