Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01209 GTGGAACATGCTAATCTGGTTGGAACACTGATGGAATGTGAAGTAAAAATCACCATGCAAGATGGAGGAAAGAAGGTAGATTCTACATATTTCAAAAGCATGGTTGGAAGTTTGAGATACTTGACATGTACAAGACCAGATATTCTTTTTTCGGTTGGAATCATTAGTCGATTTATGGAGGAGCCGACAACAACACATTACAAAATGGCAAAGCGGATACTTCGCTACATCAAAGGGATGATCGGGTATGGTCTTTCCTATTTCTCTTTTAGTAATTTTGATATTACTAGTTATTGTGATAGTGATTGGAGTGGTGACTTGGATGATCGGAAGAGCACCACGGGGCCTGGTTCGAGGGAGTCTCTTCTTAGATGCTTCATAAAACGAAACCGATCCACGCAAACTTATTACCTTTTTCTCAGTTTAACTAATGCCCTCACTGATGATGGGAAGTTTCTTCTTGCTGCACGAAAATGTAGACGACCCACCTGTACGGATTATATCATCTCTACTCGTGCTGATGACATGTCCAAGGGGAGCACCACCTACGTTGGGAAATTAAGATCCAACTTTCTAGGAACCAAGTTTACAATTTTTGATGGGCAGCCGCCTCATGCGGGAGCGAAGATGACAAAAAGTCGCTCCACCAGGCTTGTAAATCTGAAACAAGTTTCACCCAAAGTTCCCGTAGGGAACTACCCAGTTGCTCACATCTCATATGAATTGAATGTACTGGGTTCAAGGCAAGTTTTAAATATAAATCATATCAAAGACTTTAACATGGGTCCAAGGAGAATGCAGTGCATCATGGACGCCATTCCTGCCTCTTCAATTGGACCTGGGGGAAAGGCTCCCACACAAACTGAGCTTTCACTTAACAATGTTGAATTTTTCCCATCACTCCCATATTTCCGGTCAAAGTCAATTCACTTGGATAATTATCTATCAGGACCTCTGACCAGTCAGAAAGATGAAATGCTGGTTTTGAGAAACAAGAACCCCAGGTGGCATGAGCAGTTACAATGCTGGTGCTTGAATTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAATTTTCAGTTAGTTGCTTCGCCAGAAAATGGACCAGCTGGACCAGAACATGAGAAAATCATCCTCCAATTTGGTAAAGTAGGGAAGGATTTATTTACAATGGATTATCGGTACCCAATCTCAGCATTCCTGGCTTTTGCAATCTGTCTTAGCAGCTTTGATACCAAGATCGCTTGTGAATGA 1254 42.03 VEHANLVGTLMECEVKITMQDGGKKVDSTYFKSMVGSLRYLTCTRPDILFSVGIISRFMEEPTTTHYKMAKRILRYIKGMIGYGLSYFSFSNFDITSYCDSDWSGDLDDRKSTTGPGSRESLLRCFIKRNRSTQTYYLFLSLTNALTDDGKFLLAARKCRRPTCTDYIISTRADDMSKGSTTYVGKLRSNFLGTKFTIFDGQPPHAGAKMTKSRSTRLVNLKQVSPKVPVGNYPVAHISYELNVLGSRQVLNINHIKDFNMGPRRMQCIMDAIPASSIGPGGKAPTQTELSLNNVEFFPSLPYFRSKSIHLDNYLSGPLTSQKDEMLVLRNKNPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDLFTMDYRYPISAFLAFAICLSSFDTKIACE 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14897856 14906677 + Bda017298.1 Bda03g01209 4468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01209 417 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 105 417 - -
Bda03g01209 417 PANTHER TUBBY-RELATED 105 417 - -
Bda03g01209 417 SUPERFAMILY Tubby C-terminal domain-like 105 417 IPR025659 -
Bda03g01209 417 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Bda03g01209 417 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Bda03g01209 417 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Bda03g01209 417 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Bda03g01209 417 PRINTS Tubby superfamily signature 395 417 IPR000007 -
Bda03g01209 417 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Bda03g01209 417 PRINTS Tubby superfamily signature 374 393 IPR000007 -
Bda03g01209 417 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Bda03g01209 417 Pfam Tub family 115 412 IPR000007 -
Bda03g01209 417 Gene3D Tubby Protein; Chain A 106 417 IPR025659 -
Bda03g01209 417 ProSitePatterns Tub family signature 2. 402 417 IPR018066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01209 K19600 TUB, TULP; tubby and related proteins - jre:108995057 512.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01209 Bda-Chr3:14897856 Bda03g00391 Bda-Chr3:3234059 5.86E-112 dispersed
Bda02g00959 Bda-Chr2:49950985 Bda03g01209 Bda-Chr3:14897856 1.70E-13 transposed
Bda08g00922 Bda-Chr8:16979385 Bda03g01209 Bda-Chr3:14897856 1.34E-08 transposed
Bda08g00936 Bda-Chr8:17317053 Bda03g01209 Bda-Chr3:14897856 4.79E-17 transposed
Bda12g01059 Bda-Chr12:42342619 Bda03g01209 Bda-Chr3:14897856 2.13E-10 transposed
Bda15g00754 Bda-Chr15:11123829 Bda03g01209 Bda-Chr3:14897856 2.15E-09 transposed
Bda03g01209 Bda-Chr3:14897856 Bda08g00279 Bda-Chr8:2908572 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00735 . 1 426 TUB Transcription Factor Family AT1G76900 70.3 8.0e-173 603.6
Bda08g00739 . 1 426 TUB Transcription Factor Family AT1G76900 70.1 1.5e-171 599.4
Bda03g00391 CCT 1 429 TUB Transcription Factor Family AT1G76900 69.2 5.3e-169 590.9
Bda15g00463 . 1 424 TUB Transcription Factor Family AT1G76900 68.0 1.2e-163 573.2
Bda11g00874 CCT 1 425 TUB Transcription Factor Family AT1G76900 61.5 1.2e-144 510.0
Bda03g00263 BCT 1 413 TUB Transcription Factor Family AT1G76900 51.4 2.5e-118 422.5
Bda11g01863 . 1 408 TUB Transcription Factor Family AT1G76900 51.1 4.6e-112 401.7
Bda12g00817 . 50 196 TUB Transcription Factor Family AT1G76900 51.0 8.9e-39 158.3
Bda08g00735 . 173 426 TUB Transcription Factor Family AT1G25280 71.5 1.7e-98 355.9
Bda08g00739 . 173 426 TUB Transcription Factor Family AT1G25280 71.2 1.4e-97 352.8
Bda03g00391 CCT 173 429 TUB Transcription Factor Family AT1G25280 66.3 2.4e-92 335.5
Bda15g00463 . 174 424 TUB Transcription Factor Family AT1G25280 68.7 2.9e-90 328.6
Bda11g00874 CCT 191 425 TUB Transcription Factor Family AT1G25280 67.1 9.7e-86 313.5
Bda01g00462 . 176 413 TUB Transcription Factor Family AT1G25280 55.5 4.0e-71 265.0
Bda01g00525 BCT 176 413 TUB Transcription Factor Family AT1G25280 55.5 4.0e-71 265.0
Bda08g00279 . 156 394 TUB Transcription Factor Family AT1G25280 52.6 4.8e-69 258.1
Bda03g00263 BCT 177 413 TUB Transcription Factor Family AT1G25280 54.8 1.8e-68 256.1
Bda03g01209 . 173 417 TUB Transcription Factor Family AT1G25280 50.4 1.3e-66 250.0
Bda11g01863 . 175 408 TUB Transcription Factor Family AT1G25280 53.8 5.0e-66 248.1
Bda03g01209 . 116 417 TUB Transcription Factor Family AT5G18680 60.2 2.8e-94 342.0
Bda08g00279 . 98 394 TUB Transcription Factor Family AT5G18680 60.3 4.1e-93 338.2
Bda08g00735 . 112 426 TUB Transcription Factor Family AT5G18680 51.7 2.3e-80 295.8
Bda15g00463 . 112 424 TUB Transcription Factor Family AT5G18680 51.1 8.8e-80 293.9
Bda08g00739 . 112 426 TUB Transcription Factor Family AT5G18680 50.8 2.0e-79 292.7
Bda01g00462 . 113 413 TUB Transcription Factor Family AT5G18680 50.3 8.3e-78 287.3
Bda01g00525 BCT 113 413 TUB Transcription Factor Family AT5G18680 50.3 8.3e-78 287.3
Bda03g00263 BCT 114 413 TUB Transcription Factor Family AT5G18680 50.3 7.0e-77 284.3
Bda11g01863 . 1 408 TUB Transcription Factor Family AT2G18280 61.6 1.4e-133 473.0
Bda03g00263 BCT 1 413 TUB Transcription Factor Family AT2G18280 55.2 1.9e-122 436.0
Bda01g00525 BCT 1 413 TUB Transcription Factor Family AT2G18280 56.7 4.0e-120 428.3
Bda01g00462 . 1 413 TUB Transcription Factor Family AT2G18280 56.7 5.2e-120 427.9
Bda03g00391 CCT 1 429 TUB Transcription Factor Family AT2G18280 52.3 3.2e-117 418.7
Bda08g00735 . 1 426 TUB Transcription Factor Family AT2G18280 51.2 5.6e-114 407.9
Bda15g00463 . 1 424 TUB Transcription Factor Family AT2G18280 52.0 7.3e-114 407.5
Bda08g00739 . 1 426 TUB Transcription Factor Family AT2G18280 51.0 9.5e-114 407.1
Bda08g00279 . 1 394 TUB Transcription Factor Family AT2G18280 53.2 2.3e-112 402.5
Bda03g01209 . 116 417 TUB Transcription Factor Family AT2G18280 52.3 8.1e-81 297.7
Bda08g00279 . 1 394 TUB Transcription Factor Family AT2G47900 67.8 5.3e-160 560.8
Bda03g00391 CCT 1 429 TUB Transcription Factor Family AT2G47900 55.6 2.1e-132 469.2
Bda15g00463 . 1 424 TUB Transcription Factor Family AT2G47900 56.9 3.0e-131 465.3
Bda08g00735 . 1 426 TUB Transcription Factor Family AT2G47900 55.5 2.6e-130 462.2
Bda08g00739 . 1 426 TUB Transcription Factor Family AT2G47900 55.3 2.6e-130 462.2
Bda03g01209 . 116 417 TUB Transcription Factor Family AT2G47900 69.5 2.6e-122 435.6
Bda01g00525 BCT 1 413 TUB Transcription Factor Family AT2G47900 53.9 3.8e-118 421.8
Bda11g01863 . 1 408 TUB Transcription Factor Family AT2G47900 55.6 5.0e-118 421.4
Bda01g00462 . 1 413 TUB Transcription Factor Family AT2G47900 53.9 5.0e-118 421.4
Bda03g00263 BCT 1 413 TUB Transcription Factor Family AT2G47900 53.3 7.3e-117 417.5
Bda11g00874 CCT 1 425 TUB Transcription Factor Family AT2G47900 50.2 1.6e-111 399.8
Bda12g00817 . 48 196 TUB Transcription Factor Family AT2G47900 51.0 1.6e-39 160.6
Bda03g00391 CCT 65 429 TUB Transcription Factor Family AT1G43640 65.8 1.8e-143 505.8
Bda08g00735 . 65 426 TUB Transcription Factor Family AT1G43640 67.4 1.8e-143 505.8
Bda08g00739 . 65 426 TUB Transcription Factor Family AT1G43640 67.1 1.5e-142 502.7
Bda15g00463 . 65 424 TUB Transcription Factor Family AT1G43640 65.4 1.3e-138 489.6
Bda11g00874 CCT 65 425 TUB Transcription Factor Family AT1G43640 60.3 2.1e-123 439.1
Bda08g00279 . 47 394 TUB Transcription Factor Family AT1G43640 51.6 2.0e-102 369.4
Bda03g00263 BCT 67 413 TUB Transcription Factor Family AT1G43640 51.0 4.7e-99 358.2
Bda11g01863 . 66 408 TUB Transcription Factor Family AT1G43640 52.1 1.7e-96 349.7
Bda03g00263 BCT 25 413 TUB Transcription Factor Family AT1G47270 63.5 6.9e-133 470.7
Bda01g00525 BCT 31 413 TUB Transcription Factor Family AT1G47270 61.8 2.0e-132 469.2
Bda01g00462 . 31 413 TUB Transcription Factor Family AT1G47270 61.8 2.6e-132 468.8
Bda11g01863 . 1 407 TUB Transcription Factor Family AT1G47270 57.9 3.8e-123 438.3
Bda08g00735 . 48 426 TUB Transcription Factor Family AT1G47270 55.4 3.9e-112 401.7
Bda08g00739 . 48 426 TUB Transcription Factor Family AT1G47270 55.4 3.9e-112 401.7
Bda15g00463 . 31 424 TUB Transcription Factor Family AT1G47270 52.6 3.3e-111 398.7
Bda03g00391 CCT 31 429 TUB Transcription Factor Family AT1G47270 52.2 1.3e-110 396.7
Bda11g00874 CCT 48 425 TUB Transcription Factor Family AT1G47270 51.6 1.4e-98 356.7
Bda12g00817 . 1 201 TUB Transcription Factor Family AT1G53320 54.2 4.9e-51 198.7
Bda08g00279 . 98 394 TUB Transcription Factor Family AT3G06380 60.8 2.0e-92 335.9
Bda03g01209 . 117 417 TUB Transcription Factor Family AT3G06380 60.5 7.5e-92 334.0
Bda08g00739 . 116 426 TUB Transcription Factor Family AT3G06380 52.1 6.6e-80 294.3
Bda08g00735 . 116 426 TUB Transcription Factor Family AT3G06380 51.8 1.9e-79 292.7
Bda01g00462 . 117 413 TUB Transcription Factor Family AT3G06380 52.2 1.6e-78 289.7
Bda01g00525 BCT 117 413 TUB Transcription Factor Family AT3G06380 52.2 1.6e-78 289.7
Bda15g00463 . 116 424 TUB Transcription Factor Family AT3G06380 50.5 2.3e-77 285.8
Bda03g00263 BCT 118 413 TUB Transcription Factor Family AT3G06380 52.2 9.8e-76 280.4
Bda11g01863 . 117 408 TUB Transcription Factor Family AT3G06380 51.2 1.2e-73 273.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000019 13 63 1 12 2 2 1 5 2 3 6 3 33 0 0 38 4 3 0 4 14 7 5 28 0 0 19 10 3 1 282
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15734 PF01167 Tub 1.40E-102 CL0395 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01209 Bda_Chr03 FPKM 2.30762 3.049034 3.398834 2.923723 13.384085 12.994293 12.566857 3.063137 3.293276