Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01216 ATGGGTTCTCGTCGAGACGATGATACCCACTTCCAGAATGTGGATGACTTCGTTTCGCCGCCGCATACAGTCTCTGGTAATGAAGTGAAGGATTCAGATATAATGGGAACAAGGCCTTTTGATGACACAGTTTTTTGGGATGACGACGATGGCGACACTGTTCTATCATATGGAAATGTACACGAAGCCCAGACGAAAACACAAGTAATGGATCTAGTTGGTGACACTCAATTAGTAGATTTTGATGGTGAAACTCAAGTAGTAGATTTTGATGGTGAAACTCAAGCTGTAGATTTTGACGAGGAAACCCAAGCTTTAGATTTTGAAGGTGAAATCCCGCAGTCGGATGATATTGATTGCAACAAGAATATAGGAACACAGGTGTTAAGTGATTATGACGATGCACTTTCTAATGACGGTGGTTGTGAAGAGTCAGAGAGCACCCAAACTTTGGGTGATAATGATTATATTTTGAATGATGAAGCATTACAAGGAATAGACCAATTAGTAGACCAGGAGAGGGTTCATTTTACTTCTCATTGTGAACTTGATGAGAAGGATGTTATGCAAGTACGAGATGCTCTGACGAATGAAAAGCGCCATTCAGAACCCCATGTTCCTGCTTCATCTCCAACAATACAAGGACCCTCTGTATCAAAATCTGAACCTCTGAGATTTACTTTAATTCGTGCTGCGTCGTTGCGTGCCTCTGGTTTGGCAGTGCGGAATATGAATAAGGAAAAAAAAGTCCATGCTGGGTCTTCTATTCTCACCCAAAATCATGCATTGGAATCACTTTCTGTTGCTACTGACGGGGCTCATTTTAAAGAGGACTCATCCAAACATGATATTGATGAGAAACATGATCGTGGGATTTGCCATGAGAACGGAAGCAGATTAAGAAATGAGAATAAGCTCAAAGCTGGGAATTCAACAGTGAGAAAACTTTTTACCGAGAATACCTGTTCCAATGAATTGGGGACTCTTCATAATGAAAGGAATGCAAGAAAAAAAAACTTGCTTGAGGTGCCTTCGTTTGAATGTCAGGTGTCAGGGTTAAGCTATGTTAACTCTCAAGAACCAGGGGAGTTTTCACAAACTAATGCCCTTGATTTTGTGGATAGGTTCATTCAAACTAGCATCAATGAGTGTGATCTGGACATTAATCATGGTAAGGACACTCTGGAAAAAGCAAAATCAGTTTCTAAAATAAATGGACCGCAGAGCTTAGCCAAGAATGTTAAAGATAAAAGCACCGTTGAAAAATCAGGAGTTTTTGATTGGGATGATAGTCGTGAAGATGAAGGGGGTGGGGAGATTTTATTCAGAAGAAAGGAAGAGCTCTTTGATAGAGGTGTTGTGCGGGTATCTTGCACCCTACCCCGGAAGCTGAGTGGCGGCATATCAAATGGGTACAGCAATAGAGGTCATTCGGATTCTAAATTAGAGTTGTGTGCTTTGAAACCCAGTAAAAAATATGCCCGACTATCCAAAGGAAAAACTAGGAAAAATCTAATTAAAGAGTTGGATGAAGAACTTAAGATTAAAGAATGTAAGGTAGGTTTGGTAAATAATATCACCGAGAAAGATGGAGAGCAATTTTCAAATGTAGGTTTTGATACTCAGGTTGCAGCTGAAGCAATGGAAGCACTGTGTCAGGGTGAGGAAATTGACTTTCCCATCGGTGATGCTCATCATTGTCTCCCAAACGCCTCGAAGGATTCACTAATTGGTTCTGTTCGTAAAGCTACAGTTAGTTTGAACTCAAAGCACAATACACCTTGCAAAAGGATTAGCACGGCTGATGTAGAATTTGATTCAGTAGAGCCCAAGAAAAGAAAGATTAGTGGTAAACTACAAGAGGAGTTGGCTAAGTCAAGAAGTAATAAAACTACGAACCAGAGCATGCAAGAGGGAATACATAAGTTTGTGCCAATTGCTCGTCGAACTAGACGATCTTTGATTGTAAATCAAATGGATGATGCTGAAAATGCATGGGGTGATGATGAGCCAATCACTCATGGTACTAGCAAAAATAGGATTGGGAAGAGTAAGAAGATATCTAAAGTGCATGCAAAAGTTCAGAAGTCAAAGTCAACGCCTAATCATTCCAAGAAATTAAAAAATGTAAAACTTAGTCCACAGAGGCAACTGAATCAAAAGTCAATAACCAAGAGTGATGGTAGTGATATTGACTTGATGAGCTCTTTACAGGGAAGATCTGATCGTAATTTGCCAGGGAAATTTATTAGTCCGGATAGCAATGCTGCTACACGACGGAGAACACGGAGGAGCTCTGCTATTACTCATAACGACCATAGCAAGTTGAGCAAGACACCCCCAGTCAAATATGCTTTCCCAGTTTTTTCATCTTTGGACAAGGAATTGCAAGGAAACCAACAGTTGGGCGTCAAGGGTTCAGAAAATGTTATTTCTTGCTGTACTTCTGATACTAATGGGAAATTGATGGTCAAAGATTTTATAGAGCACAACGAATTCAGGTTATGTGATGGGAAGAGTGATGTGGGTTTGATGTCTTCTGCACAAAATCCTAATTGCAAAGATTCACCAGAAAAGAATTGTAAACCATCCAATGCATTGTCTGCTACTCCAGATAACTGTAAGATACCTGTGAATGCTGCATCACCCGTTATTATGGGTGATGACTATTACAATAAATACATTAAGAAAAACCCTTCTAAACCAAGAATGATTCAAGAAATTCGTAGCTTAAGTGCCACGGGTCACTTGCTTTCATCTACACCAAACATTCCCAGGAAAAGAAGAGATACAACTGGTATTCGAGTTTTGTACAGCCACCACTTGAATGACGACGTTGTAAACCAACAGAAGAAGATTTTGTCTAGACTAGGAATTTCGATGGCATTATCCATCACAGAGGCCACGCACTTCATTGCTGATAAATTTGTGCGCACAAGGAATATGTTAGAAGCTATTGCTCTAAGCAAATCCGTCGTTACTCATTCATGGATTGAGAATTGTGGACAAGCAAACTGCTTTATTGATGAAAAAAATCATATCTTAAGGGATACAAAAAAAGAAAAGGAATTTGGATTTTGCATGCCATTGTCACTGTCTCGTGCTGCTAAGCATCCACTTTTAAAGGGTAAAAGAGTCTTTATAACTGAAAATACAAAGCCTGGGAAAGAGATAATTTCGAGTTTGGTGAAGGCAGTGGAGGGCCAAGCTGTGGAGAGAATTGGTAGAACTGCTTTGAAAAATGATAAAATTCCTGACGATTTACTGGTTTTGTCTTGTGAAGAAGATTATGAAATTTGCGTGCCATTTCTTGAAAAAGGGGCTGCAATTTATAGTTCTGAGCTGTTATTGAATGGAATAGTCATTCAAAAGCTGGAATTTGAAAGACATCGTCTTTTTGCAGATCATGTTAAGAGGACGCGCTCGACAATGTGGTTAAAGAAAGATGGCAGTAAGTTTCTTCCAGTGGCTAAATCTCAATAA 3483 39.65 MGSRRDDDTHFQNVDDFVSPPHTVSGNEVKDSDIMGTRPFDDTVFWDDDDGDTVLSYGNVHEAQTKTQVMDLVGDTQLVDFDGETQVVDFDGETQAVDFDEETQALDFEGEIPQSDDIDCNKNIGTQVLSDYDDALSNDGGCEESESTQTLGDNDYILNDEALQGIDQLVDQERVHFTSHCELDEKDVMQVRDALTNEKRHSEPHVPASSPTIQGPSVSKSEPLRFTLIRAASLRASGLAVRNMNKEKKVHAGSSILTQNHALESLSVATDGAHFKEDSSKHDIDEKHDRGICHENGSRLRNENKLKAGNSTVRKLFTENTCSNELGTLHNERNARKKNLLEVPSFECQVSGLSYVNSQEPGEFSQTNALDFVDRFIQTSINECDLDINHGKDTLEKAKSVSKINGPQSLAKNVKDKSTVEKSGVFDWDDSREDEGGGEILFRRKEELFDRGVVRVSCTLPRKLSGGISNGYSNRGHSDSKLELCALKPSKKYARLSKGKTRKNLIKELDEELKIKECKVGLVNNITEKDGEQFSNVGFDTQVAAEAMEALCQGEEIDFPIGDAHHCLPNASKDSLIGSVRKATVSLNSKHNTPCKRISTADVEFDSVEPKKRKISGKLQEELAKSRSNKTTNQSMQEGIHKFVPIARRTRRSLIVNQMDDAENAWGDDEPITHGTSKNRIGKSKKISKVHAKVQKSKSTPNHSKKLKNVKLSPQRQLNQKSITKSDGSDIDLMSSLQGRSDRNLPGKFISPDSNAATRRRTRRSSAITHNDHSKLSKTPPVKYAFPVFSSLDKELQGNQQLGVKGSENVISCCTSDTNGKLMVKDFIEHNEFRLCDGKSDVGLMSSAQNPNCKDSPEKNCKPSNALSATPDNCKIPVNAASPVIMGDDYYNKYIKKNPSKPRMIQEIRSLSATGHLLSSTPNIPRKRRDTTGIRVLYSHHLNDDVVNQQKKILSRLGISMALSITEATHFIADKFVRTRNMLEAIALSKSVVTHSWIENCGQANCFIDEKNHILRDTKKEKEFGFCMPLSLSRAAKHPLLKGKRVFITENTKPGKEIISSLVKAVEGQAVERIGRTALKNDKIPDDLLVLSCEEDYEICVPFLEKGAAIYSSELLLNGIVIQKLEFERHRLFADHVKRTRSTMWLKKDGSKFLPVAKSQ 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15151863 15162124 - Bda017307.1 Bda03g01216 4475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01216 1160 MobiDBLite consensus disorder prediction 664 779 - -
Bda03g01216 1160 CDD BRCT_MDC1_rpt1 934 1008 - -
Bda03g01216 1160 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 927 1014 IPR001357 -
Bda03g01216 1160 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 98 1141 - -
Bda03g01216 1160 MobiDBLite consensus disorder prediction 679 705 - -
Bda03g01216 1160 MobiDBLite consensus disorder prediction 757 771 - -
Bda03g01216 1160 Gene3D BRCT domain 924 1036 IPR036420 -
Bda03g01216 1160 Gene3D BRCT domain 1037 1140 IPR036420 -
Bda03g01216 1160 ProSiteProfiles BRCT domain profile. 926 1015 IPR001357 -
Bda03g01216 1160 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 98 1141 - -
Bda03g01216 1160 MobiDBLite consensus disorder prediction 706 742 - -
Bda03g01216 1160 SMART BRCT_7 928 1005 IPR001357 -
Bda03g01216 1160 MobiDBLite consensus disorder prediction 197 219 - -
Bda03g01216 1160 SUPERFAMILY BRCT domain 915 1029 IPR036420 -
Bda03g01216 1160 MobiDBLite consensus disorder prediction 621 644 - -
Bda03g01216 1160 CDD BRCT_PAXIP1_rpt6_like 1040 1126 - -
Bda03g01216 1160 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01216 K20780 MDC1; mediator of DNA damage checkpoint protein 1 - jre:109005938 762.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00634 Bda-Chr3:5323508 Bda03g01216 Bda-Chr3:15151863 1.92E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g376 . Blo12g00044 Bda03g01216 . . . Bma04g01089 . Cmo08g01172 Cmo17g00291 . . . . . . . . . . . . . . . . . . . . . Cone14ag0793 Cone15ag0794 . . . . Chy11g01463 . . . . . . . . . . . . . . Car08g01075 Car17g00277 Cpe12g00254 Cpe17g00100 Bhi12g01748 . . . . . . . . . . . . . . . . Cme11g01969
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010432 1 1 1 1 1 1 2 0 1 1 0 1 0 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01216 Bda_Chr03 FPKM 65.159103 74.884224 102.955376 105.49588 70.048058 68.360298 67.161087 103.093201 101.629417