Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01248 ATGCGTCGCAGCGATCACATCAATTCCTCCCTTCCAGACGAGCTTCTTTTTGAAATCTTTCGCTTACTCGATTCCAAGTCCACCCGCGACGCTTGTTCTCTCGTTTGTAAGCGCTGGTTCGACCTCGAACGCCTTACTCGCACCTCCCTCCGAATAAGCGCCACTGGCAAGCCTGATCTCTTCGTCAGCCTCCTCGCCCAACGTTTCGTCAATGTCAAGAGCGTCCGCATTGATGAGCGTTTATCCATCTCCGCCTCCTCTCTCCCAGGAAGAAGGCCCCGCCTTAATCATCCCAGGTATCCTCGTAAGCGTAAACACGATGCAGAGAAGAAAGGAGCAGAAGGAGACCCGATGGAAGCTTGTTGCTTGTCAGATTCTGGGTTGACTATCATTGGTGACCGCTTCTCGAAGCTTGAGAAGCTGAGCTTGATATGGTGCTCTAATTTTTCAAGTCAAGGATTAATGTCCCTAGCTGCAAAGTGTGTACTGTTGAAATCTTTGGATCTACAGGGTTGTTATGTTGGGGACAATGGAATAGCTGCTGTTGGAAAGTTCTGTAAACAACTTGAAGATCTTAATTTACGTTTTTGTGAAGGCTTGACTGACAGTGGTTTGGTTCAAGTAGCCTTTGGTTGCGGAAAATCATTGAAAACTCTTGGTATAGCCGGCTGTGCAAAAATTACTGATATCTCATTAGAAGCTGTGGGATGTTACTGCAAATCTCTTGAGTCATTGACATTGGACTCTGAGTTCATTCTCAACAAAGGAGTGATTGATGTGGCCAAAGGGTGTCATCTTTTAAAAGTTTTGAAGTTGCAATGTGCTAATGTCACAGATGAAGCTCTAATTGCTGTTGGAACTTCCTGTGCGTCGTTGGAATTGTTGGCTTGTTTTCAGAAGTTCACTGATATGGGCTTAACAGCCATAGGGGTTGGTTGTAAGAAGTTAAAAAACCTCATTCTATGTGATTGCAATTTCTTGAGCGACACGGGATTAAAATCAGTTGCTGCTGGTTGTAAGCAACTAACACATCTTGAAGTCAATGGGTGCCACAAAATTGGAACTGTTGGACTTGAATCCATTGGAAAATCTTGCCCGTATCTCACTGACTTAGCTTTACTGTACTGCCAAAAGATAGGTAACAATGGCCTTCTCGAAGTTAGTAGGGGCTGTAAGTTTCTACAGTCTCTTCACTTGGTTGATTGCTCAGCTATTGGGGATGAAGCCATTTGCAGCATAGCTAAAGGGTGCACAAGCCTGAAGAAACTTCACATTCGTCGATGTTATGAGATTGGGAGCAAGGGAATTATAGCTGTTGGTGAGAACTGCAAGTTTCTCACGGATCTGAGCCTGAGATTCTGCGATAGGATCGGGGATGATGCCCTCATTGCTATTGGCAATGGTTGCCCGCTCCATTATCTAAATGTTAGCGGCTGTTATAATATTGGTGATGATGGAATTGTAGCCATAGCAAGAGGTTGCCCTGAACTCAGATACGTAGACGTTAGTGTTCTCAAGCAGAAGTTGGGGGATTTGGCAATGGCGGAGCTGGGTAAGGGGTGTCCTCTGCTGAAAGACATAATAATATCCCATTGCTCTGAGATAAGTGATATGGGGATTTCCCATCTGGTAAATAATTGTAGGATGATGGAATCTTGTCACATGGTTTACTGCGCTGGTATCACTTCGGCTGGAGTGGCGACCATTGTTTCAGGCTGTCCCAACGTAAAGAAGGTTGTGGTCGAGAAGTGGAAGGTCAGCGAACGAACCAAACGCAGAGCAGCCAACATCCTATCCTACCTTTGTGTCGACCTTTAA 1818 45.27 MRRSDHINSSLPDELLFEIFRLLDSKSTRDACSLVCKRWFDLERLTRTSLRISATGKPDLFVSLLAQRFVNVKSVRIDERLSISASSLPGRRPRLNHPRYPRKRKHDAEKKGAEGDPMEACCLSDSGLTIIGDRFSKLEKLSLIWCSNFSSQGLMSLAAKCVLLKSLDLQGCYVGDNGIAAVGKFCKQLEDLNLRFCEGLTDSGLVQVAFGCGKSLKTLGIAGCAKITDISLEAVGCYCKSLESLTLDSEFILNKGVIDVAKGCHLLKVLKLQCANVTDEALIAVGTSCASLELLACFQKFTDMGLTAIGVGCKKLKNLILCDCNFLSDTGLKSVAAGCKQLTHLEVNGCHKIGTVGLESIGKSCPYLTDLALLYCQKIGNNGLLEVSRGCKFLQSLHLVDCSAIGDEAICSIAKGCTSLKKLHIRRCYEIGSKGIIAVGENCKFLTDLSLRFCDRIGDDALIAIGNGCPLHYLNVSGCYNIGDDGIVAIARGCPELRYVDVSVLKQKLGDLAMAELGKGCPLLKDIIISHCSEISDMGISHLVNNCRMMESCHMVYCAGITSAGVATIVSGCPNVKKVVVEKWKVSERTKRRAANILSYLCVDL 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17846906 17853769 - Bda017371.1 Bda03g01248 4507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01248 605 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 514 581 - -
Bda03g01248 605 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 12 523 - -
Bda03g01248 605 MobiDBLite consensus disorder prediction 88 114 - -
Bda03g01248 605 Gene3D Ribonuclease Inhibitor 407 604 IPR032675 -
Bda03g01248 605 SUPERFAMILY RNI-like 298 505 - -
Bda03g01248 605 Pfam F-box 9 48 IPR041567 -
Bda03g01248 605 Pfam Leucine Rich repeat 189 207 IPR001611 GO:0005515
Bda03g01248 605 Pfam Leucine Rich repeat 471 491 IPR001611 GO:0005515
Bda03g01248 605 Pfam Leucine Rich repeat 163 181 IPR001611 GO:0005515
Bda03g01248 605 Pfam Leucine Rich repeat 341 361 IPR001611 GO:0005515
Bda03g01248 605 Pfam Leucine Rich repeat 443 465 IPR001611 GO:0005515
Bda03g01248 605 ProSiteProfiles F-box domain profile. 5 42 IPR001810 GO:0005515
Bda03g01248 605 Gene3D - 5 44 - -
Bda03g01248 605 SUPERFAMILY RNI-like 509 585 - -
Bda03g01248 605 Gene3D Ribonuclease Inhibitor 45 225 IPR032675 -
Bda03g01248 605 Gene3D Ribonuclease Inhibitor 226 404 IPR032675 -
Bda03g01248 605 SUPERFAMILY RNI-like 121 356 - -
Bda03g01248 605 SUPERFAMILY F-box domain 9 44 IPR036047 GO:0005515
Bda03g01248 605 SMART LRR_CC_2 469 493 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 135 160 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 494 520 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 313 338 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 521 546 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 443 468 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 391 416 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 239 263 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 213 238 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 547 572 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 339 364 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 161 185 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 264 288 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 417 442 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 365 390 IPR006553 -
Bda03g01248 605 SMART LRR_CC_2 186 211 IPR006553 -
Bda03g01248 605 PANTHER UNCHARACTERIZED 514 581 - -
Bda03g01248 605 PANTHER UNCHARACTERIZED 12 523 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01248 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - zju:107421301 882.093
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00577 Bda-Chr1:32781805 Bda03g01248 Bda-Chr3:17846906 4.94E-13 dispersed
Bda01g01346 Bda-Chr1:49168364 Bda03g01248 Bda-Chr3:17846906 2.04E-08 dispersed
Bda03g00199 Bda-Chr3:1592191 Bda03g01248 Bda-Chr3:17846906 1.72E-17 dispersed
Bda03g01248 Bda-Chr3:17846906 Bda09g01018 Bda-Chr9:40196030 2.64E-18 dispersed
Bda03g01680 Bda-Chr3:56189830 Bda03g01248 Bda-Chr3:17846906 5.43E-06 dispersed
Bda04g00813 Bda-Chr4:58026236 Bda03g01248 Bda-Chr3:17846906 9.06E-06 dispersed
Bda12g00497 Bda-Chr12:6711250 Bda03g01248 Bda-Chr3:17846906 1.41E-11 dispersed
Bda13g01586 Bda-Chr13:39389216 Bda03g01248 Bda-Chr3:17846906 1.83E-08 dispersed
Bda14g01173 Bda-Chr14:11164575 Bda03g01248 Bda-Chr3:17846906 3.16E-12 dispersed
Bda03g01420 Bda-Chr3:51319826 Bda03g01248 Bda-Chr3:17846906 1.47E-06 transposed
Bda04g00810 Bda-Chr4:58007599 Bda03g01248 Bda-Chr3:17846906 3.33E-15 transposed
Bda11g00828 Bda-Chr11:8199078 Bda03g01248 Bda-Chr3:17846906 2.23E-14 transposed
Bda14g01390 Bda-Chr14:16658016 Bda03g01248 Bda-Chr3:17846906 1.11E-11 transposed
Bda15g00073 Bda-Chr15:2589308 Bda03g01248 Bda-Chr3:17846906 7.53E-24 transposed
Bda14g01623 Bda-Chr14:41315836 Bda03g01248 Bda-Chr3:17846906 9.89E-09 wgd
Bda02g00219 Bda-Chr2:38069460 Bda03g01248 Bda-Chr3:17846906 5.87E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32