Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01264 ATGGCTCAAATTTTGGCACCCTCGACCCAATGCCAGATGAGAACTACCAGGAATTTGACTAGTGCTATTCCGACAATAGAAAAAACATGCTCGCTCGTATTGAAAAAGAAAACAAAACTTGTGACTAAAAGCTCAGCTAAGTTCAGAGTTTTAGCCCTCAAATCCGAAAGTAGCACAGTCAATCGACTGGAAGGTTTATTAAACTTGGATCTTACTCCATTGACTGACAAGATCATTGCTGAATATATTTGGATTGGAGGATCTGGCATTGATCTGCGTAGTAAGTCAAGGACGATATCAAGACCTGTTGAGCATCCTTCTGAGCTTCCCAAGTGGAACTATGATGGATCGAGCACAGGGCAAGCACCGGGAGAAGACAGTGAAGTTATCATATATCCTCAGGCAATTTTTAAGGACCCTTTCCGTGGTGGTAATAATATTTTGGTCATTTGTGATACTTACACACCAGCAGGTGAGCCTATACCCACAAATAAGCGACACCGGGCTGCGGAGATCTTTGGTAACAAGAAAGTTGTCGATGAAATTCCCTGGTATGGAATAGAGCAAGAGTACACCTTACTTCAGTCAAATGTGCAGTGGCCTCTAGGCTGGCCAGTTGGAGGTTATCCTGGTCCTCAGGGCCCTTACTACTGCGGCGCAGGGGCAGACAAGTCATTTGGACGTGACATATCAGATGCTCATTACAAGGCTTGCCTATATGCCGGAATCAATATTAGTGGTACCAACGGGGAGGTCATGCCTGGTCAGTGGGAATATCAAGTTGGTCCCAGCGTCGGAATCGAAGCTGGAGATCACATTTGGTGCTCAAGATACATTCTCGAGAGAATTACAGAACAGGCTGGTGTCGTTCTGTCGCTTGATCCGAAGCCAATACAGGGTGATTGGAATGGTGCTGGATGTCACACCAATTACAGTACTAAGAGCATGAGGGAAGAAGGAGGCTTCGATGTCATAAAGAAGGCGATCTTGAATCTCTCTCTTCGCCATAAGGAGCATATAAGTGCGTATGGAGAAGGAAATGAAAGAAGGTTGACTGGAAGGCATGAAACAGCTGATATTAACACCTTTTCCTGGGGTGTGGCCAATCGTGGTTGCTCGATTCGAGTGGGGCGTGAAACAGAAAATCAAGGCAAAGGTTATTTGGAAGATCGTCGTCCTGCTTCAAACATGGACCCATACGTAGTCACGTCTCTACTCGCTGAGACGACTATACTGTGGGAACCAACTCTAGAGGCAGAAGCTCTTGCAGCTCAGAAACTGGCTCTAAAAGTGTAA 1296 45.76 MAQILAPSTQCQMRTTRNLTSAIPTIEKTCSLVLKKKTKLVTKSSAKFRVLALKSESSTVNRLEGLLNLDLTPLTDKIIAEYIWIGGSGIDLRSKSRTISRPVEHPSELPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFGNKKVVDEIPWYGIEQEYTLLQSNVQWPLGWPVGGYPGPQGPYYCGAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWCSRYILERITEQAGVVLSLDPKPIQGDWNGAGCHTNYSTKSMREEGGFDVIKKAILNLSLRHKEHISAYGEGNERRLTGRHETADINTFSWGVANRGCSIRVGRETENQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLALKV 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18975793 18978868 + Bda017396.1 Bda03g01264 4523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01264 431 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 163 415 - -
Bda03g01264 431 SUPERFAMILY Glutamine synthetase, N-terminal domain 78 161 IPR036651 GO:0004356|GO:0006542|GO:0006807
Bda03g01264 431 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 296 312 IPR027303 -
Bda03g01264 431 SUPERFAMILY Glutamine synthetase/guanido kinase 163 412 IPR014746 GO:0003824
Bda03g01264 431 SMART Gln_synt_C_2 162 410 IPR008146 GO:0004356|GO:0006807
Bda03g01264 431 ProSitePatterns Glutamine synthetase signature 1. 114 131 IPR027302 -
Bda03g01264 431 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 78 158 IPR008147 GO:0004356|GO:0006542|GO:0006807
Bda03g01264 431 PANTHER GLUTAMINE SYNTHETASE 60 414 - -
Bda03g01264 431 Pfam Glutamine synthetase, catalytic domain 227 313 IPR008146 GO:0004356|GO:0006807
Bda03g01264 431 Pfam Glutamine synthetase, beta-Grasp domain 81 156 IPR008147 GO:0004356|GO:0006542|GO:0006807
Bda03g01264 431 Gene3D - 60 162 IPR036651 GO:0004356|GO:0006542|GO:0006807
Bda03g01264 431 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 162 431 IPR008146 GO:0004356|GO:0006807
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01264 K01915 glnA, GLUL; glutamine synthetase [EC:6.3.1.2] - jre:109005909 743.806
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01264 Bda13g00143 CCT
Bda03g01264 Bda13g00143 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01264 Bda-Chr3:18975793 Bda13g01809 Bda-Chr13:41942035 0 dispersed
Bda03g01264 Bda-Chr3:18975793 Bda01g01139 Bda-Chr1:46403287 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g412 . . Bda03g01264 . . . Bma04g01174 . . . . Cma14g01668 Car06g01245 Car14g01502 Sed02g1281 Cpe08g00232 Cpe03g01408 Bhi01g00873 Tan10g0907 Cmetu06g1518 . . . . . . . . . . . . . Cone7ag0205 Cone4ag0196 Lsi05g01467 . . Cme06g00659 . . . Bda13g00143 . . . . . Cmo06g01445 Cmo14g01714 . . . . . . . . . . . . . . . . . . . . . Csa03g01384 Chy06g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000333 5 5 3 4 4 4 2 4 4 4 4 4 7 3 4 8 4 8 7 4 4 4 2 4 4 3 4 9 5 5 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g01264 Bda_Chr03 FPKM 20.033333 22.16173 4.153549 4.114909 6.346877 5.403375 7.549856 5.880426 4.315903