Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01352 ATGATTTCTGTTGCGTCCTCCATTGAAACACAGCAGCCGGAGCTTTCTCCGACGGCGGTTAAACCACCGTCACCTAACATTCTTAGAAAGGTGGATTCCGAAACTACCTTCATCTTCAAATCGAAATTGCCGGATATCCCCATCCCCAACCACCTCCCTCTTCCGACCTACTGCTTTGAGCGGCTCTCCGAGTTCTCCGAACGGCCATGTCTGATAGTCGGATCCACCGGAAAAACCTACACTTTCGGAGAAACCCACCTCATTTCCAAAAGAGTTGGAGCCGGATTGACCAGTCTCGGCATTAAAAAGAACGACGTCATAATGATTCTCCTCCAAAATTCCGCTGAATTCATTTTCACTTTCATCGGAGCGGCCATGATCGGCGCCGTCACCACCACGGCCAACCCGTTCTACACCAGCGCAGAAGTTTTCAAGCAAATAAAATCCTCTGGAGCCAAACTGATCGTAACGCAGGCGCAGTACGTTGAAAAACTCCGGGAGCCAACGGAAAACGACCCCAAACTCGGCGAGGATTTCACAGTAATCACCATTGACAACCCGCCGGAGAAATGCCTACACTTCTCAGCAATTTCGGAGTCTAACGAGAACGGTCTTCCAGTCACTGCCATCGACGCAAACGACCCAGTGGCGCTGCCGTTTTCCTCCGGCACCACCGGGCTGCCGAAGGGAGTAATTCTCACCCACAAAAGCTTAATAACAAGCGTAGCTCAGCAAGTAGACGGAGAGAATCCAAATCTCTATCTAACTCCAGACGACGTGGTTTTATGCGTCCTCCCACTATTTCACATATACTCTCTCAATAGCGTCCTTTTATGCTCCTTGAGAGCTGGAGCAGCCGTTTTGCTCATGCAAAAGTTTGAGATGGGGGCATTTTTGGAATTAATCGTCCGGCACAAGGTGTCGGTGGCTGCGGTGGTGCCGCCGCTCGTATTGGCTCTTGCCAAAAACTCTAAGGTGGCGGAATTCAACCTCAGCTCCATTCGGGTGGTGTTGTCGGGGGCTGCCCCGCTAGGGAAGGAGCTGGAGGAGGCCCTCAAGAGCCGACTGCCCCAAGCCACTCTTGGTCAGGGGTATGGGATGACAGAAGCCGGGCCGGTCCTGTCGATGTGCTTGGGGTTTGCACGTCAGCCATTTGCCACCAAGTCCGGGTCGTGTGGGACGGTGGTCAGAAATGCAGAGCTGAAAGTAATCGACCCTAACACCGGAGCATCCCTTGGCTACAACCAGCCCGGAGAGATCTGCATTCGCGGCTCCCAAATCATGAAAGGGTATTTAAATGACGACGAGGCCACAACAAACACCATCGACGTGGCCGGATGGCTTCACACCGGAGACATTGGCTACGTCGACGAAGATGAAGAAGTTTTCATTGTAGATAGAGTGAAAGAGCTCATTAAATTCAAAGGATTCCAGGTGCCACCGGCTGAGCTTGAGTCTCTTCTTGTGAGCCATCCATCAATCGCAGATGCAGCAGTCGTGCCGCAAAAAGATGTAGTTGCTGGGGAAGTTCCTGTTGCATTTGTTGTTCGTTCAAATGGGTTGGATCTCACTGAAGAAGATGTCAAAGAATTTATTGCCAAACAGGTGGTGTTCTACAAGAAACTACACAGAGTACACTTTGTGAGTGCAATTCCGAAGTCTCCGGCCGGCAAGATTTTGAGAAAGGATTTAAGAGCAAAGCTTGCATCGCCATTCCCTCTCTTCACTTAA 1731 50.95 MISVASSIETQQPELSPTAVKPPSPNILRKVDSETTFIFKSKLPDIPIPNHLPLPTYCFERLSEFSERPCLIVGSTGKTYTFGETHLISKRVGAGLTSLGIKKNDVIMILLQNSAEFIFTFIGAAMIGAVTTTANPFYTSAEVFKQIKSSGAKLIVTQAQYVEKLREPTENDPKLGEDFTVITIDNPPEKCLHFSAISESNENGLPVTAIDANDPVALPFSSGTTGLPKGVILTHKSLITSVAQQVDGENPNLYLTPDDVVLCVLPLFHIYSLNSVLLCSLRAGAAVLLMQKFEMGAFLELIVRHKVSVAAVVPPLVLALAKNSKVAEFNLSSIRVVLSGAAPLGKELEEALKSRLPQATLGQGYGMTEAGPVLSMCLGFARQPFATKSGSCGTVVRNAELKVIDPNTGASLGYNQPGEICIRGSQIMKGYLNDDEATTNTIDVAGWLHTGDIGYVDEDEEVFIVDRVKELIKFKGFQVPPAELESLLVSHPSIADAAVVPQKDVVAGEVPVAFVVRSNGLDLTEEDVKEFIAKQVVFYKKLHRVHFVSAIPKSPAGKILRKDLRAKLASPFPLFT 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48786072 48788984 + Bda017793.1 Bda03g01352 4611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01352 576 MobiDBLite consensus disorder prediction 1 24 - -
Bda03g01352 576 CDD 4CL 48 564 - -
Bda03g01352 576 PANTHER 4-COUMARATE--COA LIGASE 3 36 567 - -
Bda03g01352 576 Pfam AMP-binding enzyme 61 474 IPR000873 -
Bda03g01352 576 Pfam AMP-binding enzyme C-terminal domain 483 558 IPR025110 -
Bda03g01352 576 SUPERFAMILY Acetyl-CoA synthetase-like 46 570 - -
Bda03g01352 576 Gene3D - 469 570 IPR045851 -
Bda03g01352 576 Gene3D - 29 468 IPR042099 -
Bda03g01352 576 MobiDBLite consensus disorder prediction 1 17 - -
Bda03g01352 576 ProSitePatterns Putative AMP-binding domain signature. 218 229 IPR020845 -
Bda03g01352 576 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 36 567 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00282 Bda-Chr2:41425929 Bda03g01352 Bda-Chr3:48786072 0 dispersed
Bda03g01352 Bda-Chr3:48786072 Bda04g00768 Bda-Chr4:57173261 0 dispersed
Bda03g01352 Bda-Chr3:48786072 Bda03g01354 Bda-Chr3:49076453 0 proximal
Bda09g00296 Bda-Chr9:3742260 Bda03g01352 Bda-Chr3:48786072 5.14E-10 transposed
Bda10g00944 Bda-Chr10:43762481 Bda03g01352 Bda-Chr3:48786072 6.54E-111 transposed
Bda03g01352 Bda-Chr3:48786072 Bda05g00249 Bda-Chr5:42387458 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01352 K01904 - tcc:18599509 887.1