Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01381 ATGTCCCACATTGATCTGGAATCCGGCGGACACCAACGTTCGGTAACGGGAAGTGACGTAAGCGTCGAGGATAGCGTCTACTTCTCCGACGCCGACGAGGATTCCTGCTATTCTCAGTTCTTCTCGCCAAACGGCGGTTCTTACGACGATTACATGTTCGCCCTCGGCTTCGCCGGGATCCTTTCGGCTTCTCAAAGAGCGTCATCGGCGGCGGATTCTTCGGTGAAAGTCGAAATCGAAAGTGGGGTAGCTGAAATCAAGGCGCATGTGGCTAAAGTAGAGAGAGATTGCAGAATTTGTCATCTGGGTTTGGAAAGTAACAGCCGGGAGTCCGGCGTTCCGATCGAATTGGGCTGTTCTTGCAAGGAGGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGACCTGGTTCAAAATCAAAGGAAATAAGAAGTGCGAGATTTGTCATTCGATTGCCAGGAATGTGCTGGGAGCCCAGGAGATTGAGCTGATGGAGCGAACCAACGAGGCCAGCAATGCCTCCTCAATTGCATCGGCTCCGGCCCCTCCTGCTGAGAGCCAAAGGTTTTGGAGTGGGCGTAGGTTCCTGAATTTTCTGCTTGCCTGTGTGGTGTTTGCATTTGTCATTTCATGGCTCTTCCACTTCAATGTTTCATCATAG 660 51.52 MSHIDLESGGHQRSVTGSDVSVEDSVYFSDADEDSCYSQFFSPNGGSYDDYMFALGFAGILSASQRASSAADSSVKVEIESGVAEIKAHVAKVERDCRICHLGLESNSRESGVPIELGCSCKEDLAAAHKHCAETWFKIKGNKKCEICHSIARNVLGAQEIELMERTNEASNASSIASAPAPPAESQRFWSGRRFLNFLLACVVFAFVISWLFHFNVSS 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 50097905 50099463 - Bda017843.1 Bda03g01381 4640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01381 219 SUPERFAMILY RING/U-box 94 151 - -
Bda03g01381 219 ProSiteProfiles Zinc finger RING-CH-type profile. 89 155 IPR011016 GO:0008270
Bda03g01381 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 156 IPR013083 -
Bda03g01381 219 Pfam RING-variant domain 97 148 IPR011016 GO:0008270
Bda03g01381 219 PANTHER ZINC FINGER, RING-CH-TYPE 2 219 - -
Bda03g01381 219 SMART ringv_2 96 149 IPR011016 GO:0008270
Bda03g01381 219 CDD RING_CH-C4HC3_MARCH 97 149 - -
Bda03g01381 219 PANTHER OS01G0850200 PROTEIN 2 219 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g01381 Bda05g00947 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01381 Bda-Chr3:50097905 Bda15g00243 Bda-Chr15:5071312 1.27E-58 dispersed
Bda14g00275 Bda-Chr14:1858375 Bda03g01381 Bda-Chr3:50097905 3.30E-55 wgd
Bda03g01381 Bda-Chr3:50097905 Bda05g00277 Bda-Chr5:44384939 9.16E-157 wgd
Bda03g01381 Bda-Chr3:50097905 Bda05g00947 Bda-Chr5:57993974 3.26E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01381 - - csv:101218915 319.701