Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01443 ATGGAGTCAAGGACTTGCACGAATGTGTCCTGCGGTGCGTCGTCATTAGCCCAGTGGAAGAATGGCTGGCCCCTGCGATCCGGCGATTTCGCCACCCTCTGTGATAAGTGCGGGTCTGCTTATGAGCAATCAATTTTCTGTGATTTGTTCCACGCAACTGACTCTGGGTGGAGAGAATGTACTTTGTGTGGCAAGCGCCTACATTGTGGATGTGTTGCTTCAAGGTCTTTACTGGAGCTACTGGATAGTGGTGGTGTTGCTAAAAAAGAAATTTGTAATGAATTGGAGACATCCAAACTTCATGGTACTTGTAAGCTGCAATCCATTTCTAAGGATAAACAGTTGGATGACAGTGATGACAAAATAAAGTTTATTCAAATAGACAATCATACTGTGGGTAATGAACGAAGACTTTTGCTCCAATCTCAAAACCATGGCATAAATAGAAATTTGCAGCAAATAAAGCAAGAGGTCATTTTTCCCTCCGTGGGAGAAATTGGACGTGTCTGTTTCCTGGAGTTTAATCAAGATTCCAATGGATCCTCTGATGCCACTACTCCTGGTATATGTAAAGTTGACTGTGGAACAAAACATCTGTATGAACCATTGAGGCAAACAAGTACGAATGCGAACTTGGGTTCAGAAAACTCATGTCCATTACTTGAAGTTTCAATTAGTGAAAGAGAACACAAGACGTCCTCCCCATTGCAAGGTTCTAGATCTTTCCCTCTAATGCCAAAGCCACCAAGGTCAGTGCTTGCTGCAGGCTTGGATGCCAATAATGCCATGATTTCACAGATACGAGTTGCAAGGCCACCTGCCGAATGTAAGGGAAGGAATCAGTTGCTTCCTAGATATTGGCCCAGGATTACAGATCAAGAATTACAACAGTTATCCGGATCTTCAAATTCAACTGTTGTGCCTCTGTTTGAAAAGATGTTAAGTGCTAGTGATGCCGGTCGAATTGGTCGTTTGGTGGTCCCAAAAGCATGTGCTGAAGCATATTTTCCTCCCATCTCTCAACCAGAGGGTCTTCCCATAAGAATTCAAGATGTAAAAGGAAGAGAATGGGTCTTCCAGTTTAGATTTTGGCCGAATAATAACAGCAGGATGTATGTTTTGGAGGGTGTGACTCCCTGCATTCAATCAATGCAGTTGCAAGCTGGCGATACTGTGACTTTCAGTCGCATGGATCCTGAAGGAAAACTTATTATGGGATTTCGTAAAGCATCAGCTTCTGTCGCCACACAGGATAGCCATCTATCTACTATTCCCTCTGGTGCTCATTCAAGTGAAACTTTCTTTTCCGGTGCTTTTGATAACCTCTCCATTGTAAGTGGTCATTCTAGCCTTCTTCAATACCTTAAGGAAAGTGGAGGCTCACAGTTGAATGCATTGCCCAAACACTTGATTCCAGTCAGTGCTGATATGAGCTATTATAGAACGGAGAAGCATGATGACGGAACAAAGGAGCCCTTACTACTGCCTTCTGGTCTCGTACCAGAGAGGAAAAAAGCTCGTAATATTGGGTCCAAAAGTAAGAGGTTGCTCATTGATAACCAAGATTCCTTGGAGCTGAAACTTACCTGGGAAGAAGCGCAGGATTTGCTTTGCCCGCCCCCTTCAGTCAAACCTAGTAAAGTCATGATTGAGGATCATGAATTTGAAGAATATGAAGACCCACCGATCTTTGGGAAGAGGAGCATTTTTATTGCCCGTTCGATTGGGGAACAAGAGCAGTGGGTCCAGTGTGATGATTGCTCAAAATGGCGAAGGCTGCCAATTGATGTTCTTCTGCCCTCCAAGTGGACATGTGAAGACAATGTTTGGGATCAAAACAGGAAGTCATGTTCCGCTTCAGATGAATTGACGCCGAGGGAAATGGAAAACTTTTGCAAATTGGTCAAGGACTTCAAGAGACGAAGATTTATGCTAAGCCAAAGATCTCCCCAGGATTATGAATCTTCTGGTTTGGACGCTTTGGCCAATGCTGCAATTCTAGGGGACAACGATGGTGATCCAGGCACTGCATCCATTGCAACAACAACAAAACACCCGAGGCATCGTCCTGGTTGTTCCTGCATTGTCTGTATCCAGCCCCCCAGTGGCAAGGGCAAGCACAAGCCTTCATGCACTTGCAATGTGTGCATGACAGTTAAACGCCGTTTCAAAACCTTGATGATGCGCAAGAAAAAACGTCAATCAGAGCGCGAAGCAGATATTGCACAGAGAAATCAACACAAATGGGGCCCAAGAGAGGAACCGGAACTAGAAACCACCTCAAGGCATGCATCCTCGAGCATTGATCCTTCAGAGAATGAAACCCGATCAACGCACCAAGAGCTAGAATCCAAAATCCAAAACAAAGTTGGGGAAACAGAGAAGAGCCAATTAGATTTGAATTGTCATCCTGAAGAAGACGAGCTACTTGGGGGATCAAAACGAGTTAGTATGACGAGTCTTCTACAAGTTGCAAGCCTTCCTTTGGAAATGTACCTAAAACAGAATGGCCTCACAAGTTTGATATCGGAGGCTCCAACAAGTCCAACATCCAATGCTCTGCCACCAACACAGGGTGCTAATGAGATTGAAGGACAGCAGGAAAGTGGTGGAGAAGAATATTGCGAACCCGAGCAGGGCCGAAACAATCCGCAATAG 2658 44.66 MESRTCTNVSCGASSLAQWKNGWPLRSGDFATLCDKCGSAYEQSIFCDLFHATDSGWRECTLCGKRLHCGCVASRSLLELLDSGGVAKKEICNELETSKLHGTCKLQSISKDKQLDDSDDKIKFIQIDNHTVGNERRLLLQSQNHGINRNLQQIKQEVIFPSVGEIGRVCFLEFNQDSNGSSDATTPGICKVDCGTKHLYEPLRQTSTNANLGSENSCPLLEVSISEREHKTSSPLQGSRSFPLMPKPPRSVLAAGLDANNAMISQIRVARPPAECKGRNQLLPRYWPRITDQELQQLSGSSNSTVVPLFEKMLSASDAGRIGRLVVPKACAEAYFPPISQPEGLPIRIQDVKGREWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKASASVATQDSHLSTIPSGAHSSETFFSGAFDNLSIVSGHSSLLQYLKESGGSQLNALPKHLIPVSADMSYYRTEKHDDGTKEPLLLPSGLVPERKKARNIGSKSKRLLIDNQDSLELKLTWEEAQDLLCPPPSVKPSKVMIEDHEFEEYEDPPIFGKRSIFIARSIGEQEQWVQCDDCSKWRRLPIDVLLPSKWTCEDNVWDQNRKSCSASDELTPREMENFCKLVKDFKRRRFMLSQRSPQDYESSGLDALANAAILGDNDGDPGTASIATTTKHPRHRPGCSCIVCIQPPSGKGKHKPSCTCNVCMTVKRRFKTLMMRKKKRQSEREADIAQRNQHKWGPREEPELETTSRHASSSIDPSENETRSTHQELESKIQNKVGETEKSQLDLNCHPEEDELLGGSKRVSMTSLLQVASLPLEMYLKQNGLTSLISEAPTSPTSNALPPTQGANEIEGQQESGGEEYCEPEQGRNNPQ 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51914796 51925887 - Bda017941.1 Bda03g01443 4702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01443 885 SMART B3_2 310 411 IPR003340 GO:0003677
Bda03g01443 885 SUPERFAMILY DNA-binding pseudobarrel domain 307 409 IPR015300 -
Bda03g01443 885 Pfam CW-type Zinc Finger 580 622 IPR011124 GO:0008270
Bda03g01443 885 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 847 - -
Bda03g01443 885 MobiDBLite consensus disorder prediction 842 865 - -
Bda03g01443 885 MobiDBLite consensus disorder prediction 842 885 - -
Bda03g01443 885 MobiDBLite consensus disorder prediction 727 781 - -
Bda03g01443 885 CDD B3_DNA 308 409 IPR003340 GO:0003677
Bda03g01443 885 Gene3D - 572 624 - -
Bda03g01443 885 ProSiteProfiles Zinc finger CW-type profile. 575 625 IPR011124 GO:0008270
Bda03g01443 885 ProSiteProfiles B3 DNA-binding domain profile. 310 411 IPR003340 GO:0003677
Bda03g01443 885 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 847 - -
Bda03g01443 885 MobiDBLite consensus disorder prediction 731 760 - -
Bda03g01443 885 Pfam B3 DNA binding domain 310 409 IPR003340 GO:0003677
Bda03g01443 885 Gene3D - 288 414 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01443 Bda-Chr3:51914796 Bda09g00108 Bda-Chr9:1959470 0 dispersed
Bda03g01443 Bda-Chr3:51914796 Bda03g01650 Bda-Chr3:55852070 1.04E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15741 PF02362 B3 2.10E-15 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01443 - - qlo:115953034 1204.89