Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01511 ATGGAAGAAAAAGGTTGTTTTGGCAATTTTGTGGAGAGAGCCAAACCTTACATCGCCATGATTTGTCTTCAGTTTGGCTATGCCGGCATGAATATAATCACCAAGGTTTCTCTTAATCGAGGAATGAGCCACTACGTTCTGGTTGTTTACAGACATGCTTTCGCTACTGCCGCCATAGCTCCTTTTGCTTTTGTTCTTGAAAGGAAAGTTAGACCCAAGATCACATTCCCCATTTTCATGCAGCTTTTTGTTCTGGGTCTTCTTGGAATATCCAGGAAATTTAACCTTTTCTTCTATCGAACTTACAGGCCGGTGATTGATCAAAACTTCTATTACGCTGGACTAAAGTTCACCTCCCCCACCTTCTCCTGCGCCATGAGCAACATGCTTCCTGCAATGACATTTGTCATGGCTCTCATTTTCAGAAGGATGGAGATATTGGACGTGAAGAAACTAAGGTGTCAAGCAAAATTAATAGGAACAGTAGTGACAGTTGGTGGGGCCATGTTGATGACGTTATACAAAGGCCATGTCGTGAATTTCTTCTGGTCTGATCATCTTCACCATATCAACTCCTCTGGAGGTTCAGAAAGTGGGAATGGTGATAAAGATTGGGTTAAAGGATCCATTCTTCTGATTATTGCTACTCTTGCATGGGCTTCCTTTTTCATTCTTCAGGCTATAACGTTGAGAAGATATACAGCTCAGCTTTCACTTACTTCTCTGGTTTGCTTTATGGGGACTCTTCAATCCATTGGTGTTACCCTTGTAATGGAACGTAAGCCTTCTGCTTGGGCCATCGGGTGGGACATCGCTGCAGCCTATCTTCTCTCCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCATCATCATCTCTCCTCTCTGAATGAGCAGGGGATAGTGTCATCTAGCATTGCATACTATGTTCAAGGGTTGGTGATGCAGAAGAGAGGGCCAGTCTTCGTTACAGCATTCAGTCCTTTGATGATGATAATAGTTGCTGTAATGGGTTCTTTCATTCTTGCCGAGAAGATCTACCTTGGAGGGATTCTTGGAGGTGCGCTGATAGTAATGGGGCTGTACGCAGTTCTGTGGGGGAAGTACAAAGAACACAAAGAGAAGGAAGCTGAGGAAGCCATTGTTGATCCAGTAAAAACTGGAGAAAATGGGAAGGCTATAGAGAAGATGGAAGAAGTCGATGACATAGAAATGCAGAAGAATAAAAACGTGTTCACTCCAATGGTTCCCGTTAGTTTTCCAGTGCCTCAGCCTCCCATGTTCGCCAAGGAAGCTCCGAGGTCTTAG 1359 44.37 MEEKGCFGNFVERAKPYIAMICLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFAFVLERKVRPKITFPIFMQLFVLGLLGISRKFNLFFYRTYRPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMALIFRRMEILDVKKLRCQAKLIGTVVTVGGAMLMTLYKGHVVNFFWSDHLHHINSSGGSESGNGDKDWVKGSILLIIATLAWASFFILQAITLRRYTAQLSLTSLVCFMGTLQSIGVTLVMERKPSAWAIGWDIAAAYLLSSLSLSSLSLSLSLSLSLSLSLSLSLSLTHHHLSSLNEQGIVSSSIAYYVQGLVMQKRGPVFVTAFSPLMMIIVAVMGSFILAEKIYLGGILGGALIVMGLYAVLWGKYKEHKEKEAEEAIVDPVKTGENGKAIEKMEEVDDIEMQKNKNVFTPMVPVSFPVPQPPMFAKEAPRS 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 53576155 53578022 - Bda018032.1 Bda03g01511 4770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01511 452 PANTHER WAT1-RELATED PROTEIN 10 275 IPR030184 GO:0016021|GO:0022857
Bda03g01511 452 PANTHER WAT1-RELATED PROTEIN 316 417 IPR030184 GO:0016021|GO:0022857
Bda03g01511 452 PANTHER WAT1-RELATED PROTEIN 10 275 - -
Bda03g01511 452 PANTHER WAT1-RELATED PROTEIN 316 417 - -
Bda03g01511 452 SUPERFAMILY Multidrug resistance efflux transporter EmrE 317 387 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01511 - - - twl:120013664 565.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01511 Bda-Chr3:53576155 Bda14g00333 Bda-Chr14:2320587 3.02E-173 dispersed
Bda03g01511 Bda-Chr3:53576155 Bda14g00309 Bda-Chr14:2083309 2.76E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g477 . . . . Bpe04g01371 . Bma04g01450 . Cmo06g00018 Cmo14g00505 . . . . . Cpe10g00243 Cpe08g01338 Bhi03g02519 . . . . . . Cla04g00594 Cam04g0584 Cec04g0647 Cco04g0696 Clacu04g0634 Cmu04g0632 Cre04g0633 Cone3ag0503 . Cone13ag0643 Cone19ag0646 . Csa04g01903 Chy08g00232 Cme04g02125 . Blo09g00357 Bda03g01511 . . . . . . . . Cma06g00017 Cma14g00498 Car06g00011 Car14g00456 . . Bhi11g02816 . . . . . . Cla10g01563 Cam10g1612 Cec10g1660 Cco10g1627 Clacu10g1627 Cmu10g2382 Cre10g1762 Lsi03g01630 Csa03g03691 . Cme08g01439
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00439 . 1 780 Nodulin-like Gene Family AT4G19180 55.3 5.3e-235 810.8
Bda07g00814 . 21 277 Nodulin-like Gene Family AT3G45870 67.3 2.1e-91 332.4
Bda09g00475 . 1 202 Nodulin-like Gene Family AT3G45870 67.3 7.0e-71 264.2
Bda14g01148 . 1 358 Nodulin-like Gene Family AT3G28050 61.6 7.7e-118 420.6
Bda08g00585 . 3 364 Nodulin-like Gene Family AT5G47470 59.8 2.6e-108 389.0
Bda07g00039 . 4 346 Nodulin-like Gene Family AT5G47470 50.3 1.1e-90 330.5
Bda14g01148 . 1 328 Nodulin-like Gene Family AT5G40230 57.7 2.1e-99 359.4
Bda14g01148 . 1 328 Nodulin-like Gene Family AT5G40240 56.2 2.3e-98 355.9
Bda01g00511 CCT,ECH 16 271 Nodulin-like Gene Family AT3G53210 62.9 2.9e-90 328.6
Bda01g01518 CCT,ECH 16 273 Nodulin-like Gene Family AT3G53210 59.6 8.9e-84 307.0
Bda14g00309 . 1093 1327 Nodulin-like Gene Family AT2G37450 55.7 3.4e-67 251.9
Bda15g00214 . 65 299 Nodulin-like Gene Family AT2G37450 52.3 1.4e-65 246.5
Bda03g00533 CCT 98 334 Nodulin-like Gene Family AT2G37450 51.9 3.5e-64 241.9
Bda14g00309 . 1008 1327 Nodulin-like Gene Family AT2G37460 59.1 2.8e-102 369.0
Bda03g00533 CCT 4 356 Nodulin-like Gene Family AT2G37460 51.8 1.1e-98 357.1
Bda13g01485 CCT 1 314 Nodulin-like Gene Family AT2G37460 51.3 1.9e-87 319.7
Bda01g00511 CCT,ECH 1 386 Nodulin-like Gene Family AT1G75500 76.6 2.6e-164 575.1
Bda01g01518 CCT,ECH 1 372 Nodulin-like Gene Family AT1G75500 71.3 7.1e-146 513.8
Bda14g00309 . 1001 1355 Nodulin-like Gene Family AT5G13670 50.3 2.7e-94 342.4
Bda14g00309 . 1004 1336 Nodulin-like Gene Family AT2G39510 66.1 1.1e-122 436.8
Bda15g00214 . 14 300 Nodulin-like Gene Family AT2G39510 57.5 9.7e-100 360.5
Bda03g00533 CCT 8 351 Nodulin-like Gene Family AT2G39510 53.9 3.7e-99 358.6
Bda13g01485 CCT 1 339 Nodulin-like Gene Family AT2G39510 51.0 1.1e-90 330.5
Bda15g00113 . 11 343 Nodulin-like Gene Family AT2G39510 50.6 1.8e-90 329.7
Bda14g01148 . 4 335 Nodulin-like Gene Family AT4G15540 51.9 4.3e-94 341.7
Bda13g01485 CCT 1 241 Nodulin-like Gene Family AT4G08290 65.4 6.2e-83 304.3
Bda03g00533 CCT 3 354 Nodulin-like Gene Family AT4G08300 63.0 1.1e-116 416.8
Bda13g01485 CCT 2 342 Nodulin-like Gene Family AT4G08300 51.9 5.1e-93 338.2
Bda14g00309 . 1008 1327 Nodulin-like Gene Family AT4G08300 50.3 6.9e-82 301.2
Bda10g00347 BCT 1 254 Nodulin-like Gene Family AT5G64700 62.4 1.7e-79 292.7
Bda10g00361 . 1 256 Nodulin-like Gene Family AT5G64700 51.3 1.4e-65 246.5
Bda10g00365 . 1 255 Nodulin-like Gene Family AT5G64700 50.4 2.4e-65 245.7
Bda14g00333 . 9 412 Nodulin-like Gene Family AT5G07050 66.2 1.4e-144 509.6
Bda15g00113 . 1 405 Nodulin-like Gene Family AT5G07050 65.0 1.4e-141 499.6
Bda03g01511 . 1 441 Nodulin-like Gene Family AT5G07050 55.9 6.7e-123 437.6
Bda03g00533 CCT 6 334 Nodulin-like Gene Family AT5G07050 53.7 2.7e-100 362.5
Bda14g00309 . 1008 1327 Nodulin-like Gene Family AT5G07050 53.8 2.0e-90 329.7
Bda14g00333 . 20 360 Nodulin-like Gene Family AT3G56620 54.3 1.4e-98 356.7
Bda15g00113 . 12 380 Nodulin-like Gene Family AT3G56620 51.3 3.8e-96 348.6
Bda01g02231 . 9 356 Nodulin-like Gene Family AT1G70260 52.1 9.4e-103 370.5
Bda12g01113 . 9 329 Nodulin-like Gene Family AT1G09380 63.7 3.9e-117 418.3
Bda15g00113 . 12 402 Nodulin-like Gene Family AT2G40900 50.4 9.8e-103 370.5
Bda14g00333 . 20 392 Nodulin-like Gene Family AT2G40900 52.5 4.9e-102 368.2
Bda01g00511 CCT,ECH 16 351 Nodulin-like Gene Family AT3G18200 61.0 1.9e-114 409.5
Bda01g01518 CCT,ECH 16 347 Nodulin-like Gene Family AT3G18200 56.6 5.2e-101 364.8
Bda03g00533 CCT 3 352 Nodulin-like Gene Family AT1G44800 60.5 3.6e-115 411.8
Bda13g01485 CCT 2 336 Nodulin-like Gene Family AT1G44800 52.7 4.9e-96 348.2
Bda14g00309 . 1008 1327 Nodulin-like Gene Family AT1G44800 50.6 5.6e-84 308.1
Bda09g00475 . 26 299 Nodulin-like Gene Family AT5G45370 69.1 2.8e-104 375.2
Bda07g00814 . 108 277 Nodulin-like Gene Family AT5G45370 64.1 6.2e-59 224.6
Bda03g00533 CCT 3 310 Nodulin-like Gene Family AT1G21890 65.1 4.2e-113 404.8
Bda13g01485 CCT 1 291 Nodulin-like Gene Family AT1G21890 51.8 1.6e-85 313.2
Bda15g00113 . 9 321 Nodulin-like Gene Family AT1G21890 50.2 4.2e-81 298.5
Bda12g00609 . 1 562 Nodulin-like Gene Family AT1G80530 59.0 4.1e-187 651.4
Bda01g01944 . 5 571 Nodulin-like Gene Family AT1G80530 57.9 4.7e-183 637.9
Bda01g01946 . 5 571 Nodulin-like Gene Family AT1G80530 57.9 4.7e-183 637.9
Bda06g00170 . 1 370 Nodulin-like Gene Family AT4G19450 63.5 7.6e-130 460.7
Bda06g00558 . 1 364 Nodulin-like Gene Family AT1G74780 58.2 3.0e-110 396.0
Bda06g00482 . 11 542 Nodulin-like Gene Family AT4G34950 69.8 1.3e-220 762.7
Bda15g00676 . 7 579 Nodulin-like Gene Family AT5G14120 63.4 2.0e-200 695.7
Bda06g00482 . 10 388 Nodulin-like Gene Family AT2G16660 71.1 2.1e-153 538.9
Bda14g00054 . 1 531 Nodulin-like Gene Family AT2G39210 66.5 3.5e-200 694.9
Bda15g00152 . 1 367 Nodulin-like Gene Family AT2G39210 58.9 1.1e-113 407.5
Bda15g00676 . 7 434 Nodulin-like Gene Family AT3G01930 63.3 6.1e-146 514.2
Bda06g00558 . 1 360 Nodulin-like Gene Family AT1G18940 52.8 2.0e-103 373.2
Bda15g00676 . 14 580 Nodulin-like Gene Family AT5G50520 51.0 2.1e-151 532.7
Bda15g00676 . 14 580 Nodulin-like Gene Family AT5G50630 51.0 2.1e-151 532.7
Bda06g00558 . 1 367 Nodulin-like Gene Family AT2G34350 52.0 5.3e-96 348.6
Bda14g00054 . 1 536 Nodulin-like Gene Family AT2G28120 59.2 1.7e-175 612.8
Bda02g00734 . 17 442 Nodulin-like Gene Family AT2G28120 53.8 2.1e-154 542.7
Bda15g00152 . 1 356 Nodulin-like Gene Family AT2G28120 53.7 2.5e-94 343.2
Bda06g00170 . 1 370 Nodulin-like Gene Family AT1G31470 52.7 5.3e-97 352.1
Bda03g00386 . 27 232 Nodulin-like Gene Family AT1G76800 64.7 2.2e-63 238.8
Bda13g01411 . 2 212 Nodulin-like Gene Family AT1G76800 61.1 1.1e-59 226.5
Bda14g01476 . 30 214 Nodulin-like Gene Family AT1G76800 64.9 4.3e-59 224.6
Bda14g01495 . 33 227 Nodulin-like Gene Family AT1G76800 60.5 5.5e-54 207.6
Bda15g00816 . 40 227 Nodulin-like Gene Family AT1G76800 60.1 1.8e-52 202.6
Bda15g00831 . 36 187 Nodulin-like Gene Family AT1G76800 69.7 4.1e-49 191.4
Bda01g00875 . 1 166 Nodulin-like Gene Family AT1G76800 62.7 6.5e-47 184.1
Bda14g01495 . 34 229 Nodulin-like Gene Family AT3G25190 63.1 3.1e-58 221.9
Bda15g00816 . 39 229 Nodulin-like Gene Family AT3G25190 62.2 5.6e-55 211.1
Bda13g01411 . 19 213 Nodulin-like Gene Family AT3G25190 55.8 1.5e-52 203.0
Bda14g01476 . 34 216 Nodulin-like Gene Family AT3G25190 58.1 7.5e-52 200.7
Bda03g00386 . 35 237 Nodulin-like Gene Family AT3G25190 55.2 1.4e-50 196.4
Bda01g00875 . 1 167 Nodulin-like Gene Family AT3G25190 59.9 7.5e-44 174.1
Bda15g00831 . 34 185 Nodulin-like Gene Family AT3G25190 63.1 3.7e-43 171.8
Bda03g00386 . 20 236 Nodulin-like Gene Family AT1G21140 63.9 5.2e-68 254.2
Bda13g01411 . 6 212 Nodulin-like Gene Family AT1G21140 63.0 5.1e-63 237.7
Bda14g01476 . 27 216 Nodulin-like Gene Family AT1G21140 66.5 4.3e-62 234.6
Bda14g01495 . 35 227 Nodulin-like Gene Family AT1G21140 60.6 4.6e-56 214.5
Bda15g00816 . 31 227 Nodulin-like Gene Family AT1G21140 59.9 5.1e-55 211.1
Bda01g00875 . 1 166 Nodulin-like Gene Family AT1G21140 65.7 1.8e-52 202.6
Bda15g00831 . 27 187 Nodulin-like Gene Family AT1G21140 65.2 3.2e-49 191.8
Bda03g00386 . 25 235 Nodulin-like Gene Family AT3G43630 65.7 1.3e-66 249.6
Bda13g01411 . 1 209 Nodulin-like Gene Family AT3G43630 63.8 1.1e-62 236.5
Bda14g01476 . 27 216 Nodulin-like Gene Family AT3G43630 68.1 3.6e-61 231.5
Bda14g01495 . 35 224 Nodulin-like Gene Family AT3G43630 61.1 3.3e-54 208.4
Bda15g00816 . 31 224 Nodulin-like Gene Family AT3G43630 59.8 3.6e-53 204.9
Bda01g00875 . 1 165 Nodulin-like Gene Family AT3G43630 66.1 3.8e-50 194.9
Bda15g00831 . 27 187 Nodulin-like Gene Family AT3G43630 65.2 2.1e-48 189.1
Bda03g00386 . 25 236 Nodulin-like Gene Family AT3G43660 64.0 1.8e-65 245.7
Bda13g01411 . 8 212 Nodulin-like Gene Family AT3G43660 63.4 2.8e-61 231.9
Bda14g01476 . 27 214 Nodulin-like Gene Family AT3G43660 67.0 9.8e-59 223.4
Bda15g00816 . 31 227 Nodulin-like Gene Family AT3G43660 60.4 5.9e-56 214.2
Bda14g01495 . 32 227 Nodulin-like Gene Family AT3G43660 59.7 3.8e-55 211.5
Bda01g00875 . 1 166 Nodulin-like Gene Family AT3G43660 66.3 1.2e-51 199.9
Bda15g00831 . 27 187 Nodulin-like Gene Family AT3G43660 64.0 7.8e-48 187.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000545 3 6 3 2 3 3 6 3 3 3 3 3 5 3 3 6 3 5 6 3 3 4 3 3 4 4 3 4 4 2 109