Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01513 ATGCCTTTAAAGACTAAGAAGTCTTCAAAAGCACAATCCAGATTTTCCATCTCGGACCAGATTCAATCTCCCCGGCCATCCCATTTGAACCCAACTACAAATTCGGACTTTGAGGATGAGGATTTGGTGTCTTATCTCGAAGAGGCTTCTAATAAGTTTCCTTCATTGATAGGAAAGTCAGCATTCCTGGGCCGGGTGATTGACGTGGAAGCTGGCTTCAAAGGCTGTAAGATTTGGCTCTCAGAGTCTTCCATGGTTGCTTCTTCTCTTGTTCCCGGGGCTATCGTTTCGGTATCGCTCATTGCACAAAGAGCAAAATTTTCAAATGGATTTCCTCTTTCATCATTAGGAGATGAAAGTGTTAGATCTTTTGAGGTTGATACTCCAGATAGGTTGGCTAATGAACCAGGAAACTACTTTGCCCTTGCGACCATTCATCCTTCTGTTAAGGTTTTGAAGGATGGAGTGCGGTTGTCTTTGAACCTTTCACATACCTTGGGATGCCCAACATCTGGGAGGAATTTGTTTGTATACCCTTTACAAAATCAATCAAACTCTGGTATGATAATTGGGGGTAAGAAACAAAATGTCGATGAGGTTCACTTTTTTCGAACATGCAACTGCAAGGAATTGTATCTAGAGTTTGTTTCTTCTGATAGTAGACAAACGTTGAACGGTAATATGTTGTCTTCCAGTAACTGTCATCTTGAAAAATCTTATGGTGAAAATGAAAATGAAAAAGTTGCGCCACCTAAGACTCCATTACATCAGTCTAAGCTTAGCTTGCCTAGTACTAGAAAATTAATTTCACCGATAAGTGAAGAATCAGCATTTAGTTCATCAAATCTGAAAGTTTCATCTTCCGATCCATCTCGTATTAAGGAGATACTAGAGGATAAGACTGCCAAAAAGATTCTGGAAACCTGCACTAGCTCATGGTTACATTCTCGTTGTTTACTTCTTGGAAATCTTGTAATCATACCAGTACTGTCAGAGCTTTGCACTTTTTGTGTTGTTGGTGCCACAGAGTTGTCAAATGATGCCAATTGCGATATGAATGACAAAAGTCATGACTATATGCATGAAGATCTTGAGTTACGAGAGCCTGGAAATTATGCTTTGACTATAAGTACTCGAACAAGAGTATTATTCCACGTTTCATCATCAACTAGTGTGCCTACATTGATACCAAATGGAATTTCAACTAGTGTTGACCTTGGAAGTAAAGATTTTAAAGTCAAAGGGGAAATTTCAAAATTAGGTGGACTTTCTAAAGAATATTCAATTTTAAAAGATATCATAGCTGCGGCATTTGTAAACACATTGTCTAGTTTTAGTTTGCAAACTACAAAAGGAGTACTGCTTCATGGTCCACCTGGTACAGGAAAGACATCTCTTGTTAGATTATGTGCTTGTGATGCCGGTGTCAATTTTTTCTCCTTGAGTGGACCTGAATTTATTAGTCAATATTATGGAGAAAGTGAACAAGCACTGAATGAGATTTTTGAATCTGCCAGGCGAGCTACACCTTCTGTGGTGTTTATTGACGAGTTAGATGCTATTGCGCCTGCAAGAAATGATGGAGTTGAAGCTCTATCTCAAAGAATAGTTGCTACATTATTGAATTTGATGGATGGGATTGGTAAAAATGATGGGTTTATTGTGATTGCTGCTACTAACAGACCTGATACTATTGAGCCTGCTCTCAGACGACCTGGTAGATTTAGCAGAGAAATTAAAATAGGAGTGCCATCCCCTGAGCAAAGATTGGATATATTGCTTGCTCTTCTCAGTGAAATGCAACATTCACTTCTTGACTCTCAAGTTCGACATCTTTCTGTGGTTACACATGGCTTTGTTGGTGCTGATCTGGCTGGCCTTTGCAATGAGGCAGCTATGGTTTGTCTGACGCGCTTTGATGAAGAAAGATGTGTTTTAGAAGTGACTTTTGAAGACTTTGAGGAGGCCAGAATGAAAGTGAGACCAAGCGCCATGAGAGAGAACATAATTGAGATTTCAAAAGTTAAATGGGAAGATGTGGGTGGCCAAAGGGAGGTCAAAAAACAACTGAAGGAAGTAGTAGAATGGCCACAAAAACATCAAGATACTTTTGAATGCACTGGTATTCGACCTCCATCAGGAGTCTTGTTATTTGGCCCTCCTGGTTGCAGCAAAACTCTGATGGCACGAGCAGTAGCTTCTGAAGCAGGGCTGAATTTCCTTGCTGTGAAGGGTCCAGAGCTTCTCAGCAAGTGGGTCGGTGAGTCTGAGAAGGCTGTAAGATCTCTGTTTGCGAAAGCTCAAGCAAATGCACCTTCAATCATATTTTTCGATGAAATAGATGGTTTAGCCATCATTCGAGGAATGGAAAGTGAGGGTGCCTCAGTTTCCGATAGAGTTGTCACTCAACTTCTTACTGAAATAGACGGTTTGCACAAGAGAGTTAATGTTATTGTGATTGCTGCTACAAATCGGCCCGATAAGATTGATCCAGCTCTTTTAAGACCAGGACGCTTTGATCGGTTGTTGTATGTTGGGCTTCCGAATAAAATTGATCGAGAGGAGATATTCTGCATTCATTTGCGCAAAATTCCTTGCAGCACTGATGTCAATGTAGGAGAGCTTGCTGATCTCACCGAAGGCTGCACTGGGGCTGACATATCATTCATCTGCAAGGAAGCAGCTCATGCTGCCATAGGGGAGAGCCTGGAGCTTTCAGAAATAACAATGCAACAGTTGAAGACTGCAATTGAACTCGTACAGCCATCAGAAACTGATTTCTACCAAGAATTGTCGACCAAGTTTCAAAGATTTGTCGTCTCAAACAATATGTGA 2835 40.78 MPLKTKKSSKAQSRFSISDQIQSPRPSHLNPTTNSDFEDEDLVSYLEEASNKFPSLIGKSAFLGRVIDVEAGFKGCKIWLSESSMVASSLVPGAIVSVSLIAQRAKFSNGFPLSSLGDESVRSFEVDTPDRLANEPGNYFALATIHPSVKVLKDGVRLSLNLSHTLGCPTSGRNLFVYPLQNQSNSGMIIGGKKQNVDEVHFFRTCNCKELYLEFVSSDSRQTLNGNMLSSSNCHLEKSYGENENEKVAPPKTPLHQSKLSLPSTRKLISPISEESAFSSSNLKVSSSDPSRIKEILEDKTAKKILETCTSSWLHSRCLLLGNLVIIPVLSELCTFCVVGATELSNDANCDMNDKSHDYMHEDLELREPGNYALTISTRTRVLFHVSSSTSVPTLIPNGISTSVDLGSKDFKVKGEISKLGGLSKEYSILKDIIAAAFVNTLSSFSLQTTKGVLLHGPPGTGKTSLVRLCACDAGVNFFSLSGPEFISQYYGESEQALNEIFESARRATPSVVFIDELDAIAPARNDGVEALSQRIVATLLNLMDGIGKNDGFIVIAATNRPDTIEPALRRPGRFSREIKIGVPSPEQRLDILLALLSEMQHSLLDSQVRHLSVVTHGFVGADLAGLCNEAAMVCLTRFDEERCVLEVTFEDFEEARMKVRPSAMRENIIEISKVKWEDVGGQREVKKQLKEVVEWPQKHQDTFECTGIRPPSGVLLFGPPGCSKTLMARAVASEAGLNFLAVKGPELLSKWVGESEKAVRSLFAKAQANAPSIIFFDEIDGLAIIRGMESEGASVSDRVVTQLLTEIDGLHKRVNVIVIAATNRPDKIDPALLRPGRFDRLLYVGLPNKIDREEIFCIHLRKIPCSTDVNVGELADLTEGCTGADISFICKEAAHAAIGESLELSEITMQQLKTAIELVQPSETDFYQELSTKFQRFVVSNNM 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 53648014 53654797 - Bda018034.1 Bda03g01513 4772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01513 944 MobiDBLite consensus disorder prediction 1 35 - -
Bda03g01513 944 Gene3D - 584 675 - -
Bda03g01513 944 CDD AAA 681 847 - -
Bda03g01513 944 ProSitePatterns AAA-protein family signature. 817 835 IPR003960 GO:0005524|GO:0016887
Bda03g01513 944 MobiDBLite consensus disorder prediction 240 260 - -
Bda03g01513 944 PANTHER - 644 940 - -
Bda03g01513 944 Gene3D - 848 931 - -
Bda03g01513 944 PANTHER - 41 639 - -
Bda03g01513 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 674 925 IPR027417 -
Bda03g01513 944 Gene3D - 676 847 IPR027417 -
Bda03g01513 944 Gene3D - 402 582 IPR027417 -
Bda03g01513 944 PANTHER AAA-FAMILY ATPASE 644 940 - -
Bda03g01513 944 CDD AAA 447 582 - -
Bda03g01513 944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 665 IPR027417 -
Bda03g01513 944 SMART AAA_5 711 849 IPR003593 -
Bda03g01513 944 SMART AAA_5 449 585 IPR003593 -
Bda03g01513 944 Pfam AAA+ lid domain 869 914 IPR041569 -
Bda03g01513 944 Pfam AAA+ lid domain 616 655 IPR041569 -
Bda03g01513 944 PANTHER AAA-FAMILY ATPASE 41 639 - -
Bda03g01513 944 Pfam ATPase family associated with various cellular activities (AAA) 453 582 IPR003959 GO:0005524|GO:0016887
Bda03g01513 944 Pfam ATPase family associated with various cellular activities (AAA) 715 846 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01513 Bda-Chr3:53648014 Bda04g00779 Bda-Chr4:57720506 0 dispersed
Bda04g00598 Bda-Chr4:54626218 Bda03g01513 Bda-Chr3:53648014 1.34E-35 dispersed
Bda03g01513 Bda-Chr3:53648014 Bda03g01517 Bda-Chr3:53804545 8.19E-37 proximal
Bda03g01513 Bda-Chr3:53648014 Bda03g01520 Bda-Chr3:54034453 1.89E-35 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01513 - - rcu:8259680 991.49