Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01518 ATGGCTTTGTTGGTGCTGATCTGGCTGCCCTTTGCAATGAAGCAGCTATGTTTATTAGAAGTGACTTTTGAAGACTTGGAGGAGGCCAGAATGAAAGTGAGACCAAGCGCCATAAGAGAGGTTCCAAAAGTTAAATGGAAAGATGTGGGTGGCCAAAAGGAGGTCAAGAGACAACTAATGGAAGCAGTAGAATGGCCACAAAAACATCAAGATGCATTTGAACGCATTGGTATTCGACCTCCAACAGGAGTCTTATTATTTGGCCCTCCTGGTTGCAGCAAAACTCTGATAGCACGAGCAATAGCTTCTGAAGCGGGGCTGAGTTTCCTTGACGTGAAAGGTCTAGATCTTTTCACCAAGTGGGTTGGTGAGTCTGAGAAGGCTGTCAGATCTCTGTTTGCGAAAGCTCGGGCAAATGCACCTTCAATCATATTTTTCGATGAAATAGATGGTTTAGCCATCATTCGAGGAGAGGAAAGTGAGGGTGTCTCAGTTTCCGATAGAGTTGTCAATCAACTTCTTACTAAAATGGACGGTTTGCACCAGAGCGTTAATGTTACTGTGATTGCTGCTACAAATCGGCCAGATAAGATTGATCCAGCTCTTTTAAGACCAGGACGCTTTGACCGGTTGCTATATGTTGGGCTTCCAAATAAAATTGATCGAGAAGAGATATTTTGCATTCATTTGCGCAAAATTCCTTGCAGCACTGATGTCAATGTAGGAGAGCTTGCTGATCTCACTAAAGGCTGCACTGGGGCTGACATATCATTCATCTGCCAGGAGGCGGCTCTTGCTGCCTTAGAGGTAGCCATAGAGGAGATCCTGGACTTGGAGGCTTCAGAAGTAACAATGCAACAGTTGAAGACTGCAATTGAACTCGTAAAGCCATCAGAAACTGATTTCTCCCAAGAATTGTCAACCAAGTTTCAAAGGCTTGTCTCTAATAATGTGATATGA 960 44.06 MALLVLIWLPFAMKQLCLLEVTFEDLEEARMKVRPSAIREVPKVKWKDVGGQKEVKRQLMEAVEWPQKHQDAFERIGIRPPTGVLLFGPPGCSKTLIARAIASEAGLSFLDVKGLDLFTKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAIIRGEESEGVSVSDRVVNQLLTKMDGLHQSVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGLPNKIDREEIFCIHLRKIPCSTDVNVGELADLTKGCTGADISFICQEAALAALEVAIEEILDLEASEVTMQQLKTAIELVKPSETDFSQELSTKFQRLVSNNVI 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 53824996 53830063 + Bda018042.1 Bda03g01518 4777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01518 319 PANTHER AAA-FAMILY ATPASE 18 310 - -
Bda03g01518 319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 297 IPR027417 -
Bda03g01518 319 Gene3D - 41 298 IPR027417 -
Bda03g01518 319 ProSitePatterns AAA-protein family signature. 186 204 IPR003960 GO:0005524|GO:0016887
Bda03g01518 319 Gene3D - 217 293 - -
Bda03g01518 319 Pfam AAA+ lid domain 238 288 IPR041569 -
Bda03g01518 319 PANTHER ATPASE FAMILY PROTEIN 2 HOMOLOG 18 310 - -
Bda03g01518 319 Pfam ATPase family associated with various cellular activities (AAA) 84 215 IPR003959 GO:0005524|GO:0016887
Bda03g01518 319 CDD AAA 50 216 - -
Bda03g01518 319 SMART AAA_5 80 218 IPR003593 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01518 Bda-Chr3:53824996 Bda04g00779 Bda-Chr4:57720506 4.16E-41 dispersed
Bda03g01517 Bda-Chr3:53804545 Bda03g01518 Bda-Chr3:53824996 9.59E-09 tandem
Bda03g01518 Bda-Chr3:53824996 Bda03g01519 Bda-Chr3:53933843 8.81E-32 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01518 - - cit:102630255 445.662