Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01539 ATGGCTGCCGATCCCGATAGGCCTTTGTGGTTCCCTGGTAGCACCCCTCCTCCGTGGCTCGACGGCTCCCTCCCCGCAGACTTTGGTTTTGATCCTCTTGGTCTAGGGTCCGATCCGGAGACCCTGAGATGGAACGTGCAGTCGGAGATAGTTCACTGCAGATGGGCCATGTTAGGCGCTGCCGGTATATTCATCCCCGAATTTCTCACCAAGATAGGCGTTCTCAACACTCCGTCGTGGTACACTGCTGGCGAGCTAAACTACTTCACCGACACTACTACTCTTTTCATAATCGAGCTCATTTTGATCGGATGGGCGGAGGGGAGAAGATGGGCTGACATCCTCAAGCCTGGAAGCGTCAACACCGACCCCATCTTCCCCAGCAACAAGCTCACAGGCACCGACGTCGGATACCCCGGCGGCCTCTGGTTCGACCCTCTCGGGTGGGGAACCGGATCACCGGAAAAGATCAAGGAGCTGAGAACAAAGGAGATCAAGAACGGTAGATTGGCGATGTTGGCCGTGATGGGTGCATGGTTCCAACACATCTACACCGGAACTGGCCCCATCGACAACCTCTTCGCCCACCTCGCCGATCCTGGCCACGCCACCGTTTTCGCTGTGAGTAGACCATCATTCATCACTGAATCTAACAATCTTCCCAGCTAA 669 55.75 MAADPDRPLWFPGSTPPPWLDGSLPADFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGELNYFTDTTTLFIIELILIGWAEGRRWADILKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSRPSFITESNNLPS 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 54399518 54400276 + Bda018072.1 Bda03g01539 4798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01539 222 Pfam Chlorophyll A-B binding protein 16 182 IPR022796 -
Bda03g01539 222 SUPERFAMILY Chlorophyll a-b binding protein 4 208 - -
Bda03g01539 222 Gene3D Chlorophyll a/b binding protein domain 17 202 - -
Bda03g01539 222 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 2 211 - -
Bda03g01539 222 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 211 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01539 Bda-Chr3:54399518 Bda05g01028 Bda-Chr5:58739367 5.04E-144 dispersed
Bda03g01535 Bda-Chr3:54300923 Bda03g01539 Bda-Chr3:54399518 3.71E-162 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01539 K08908 - qsu:112001492 425.631