Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01551 ATGGCAACGGCGGATTACGACCTCACCCAGCGTATTGCTCCCAATCTCGATCGTCATCTCGTGTTTCCTCTGCTCGAATTTCTTCAGGAACGGCAGCTTCACCCCGATGAGCAGATCCTCAAGTCTAAGATTGAGCTTCTCAACAAGACCAACATGGTCGACTACGCCATGGATATCCACAAGTCGCTTTACCACTCCGAAGAAGTGCCACAGGATATGGTGGAGAGGAGAGCTGAGGTGGTCGCGAGGCTCAAGGCTTTGGAAGAAGGTGCGGCGCCTATCGTCGCTTTTCTTCAGAATGCCTCTGCGGTTCTGGAGTTGAGGGCTGATAAGCATTATAATCTCCAAATGCTTAATGATCGCTATCAGATTGGTCCAAACCAGATAGAGGCATTGTATCAATATGCCAAGTTTCAGTTTGAGTGTGGAAACTACTCTGGAGCTGCAGATTATTTGTATCAGTACAGGGCTTTATCCACAAACAGCGAAAGGAGTTTGAGTGCATTGTGGGGAAAGCTGGCTGCAGAGATTTTGATGCAGAATTGGGATATTGCTTTGGAAGAACTTAATCGTTTGAAAGAAATTATTGACTCAAAGAGTTTTTCATCACCTATGAATCAGGTGCAAAGCAGAATATGGCTAATGCACTGGAGTCTGTTCATCTTTTTTAATCATGATAATGGAAGAACACAAATTATTGACCTATTTAATCAAGACAAGTATTTAAATGCCATTCAAACTAATGCTCCTCATTTGCTACGCTACTTGGCGACTGCATTCATTGTGATATTGAATGATCCTTTTCTTGGCAAACGAGTTGAAGATGGAAACTATTCAACTGTGCCATTGAGAGATGAATTTCTAGAGAATGCACGATTATTCATCTTTGAGACCTATTGCCAAATGCATCGGCGTATAGAAATGAGTGTTCTTGCTGAGAAATTGAACTTGAGTTATGAGGATGCTGAAAGATGGATTGCGAATCTTATCCGAGGCTCAAAGCTGGATGCTAGGATTGATTCAAAGTCAGGAACTGTAATCATGGAACCCAACCATCCAAATGTGTATGAGCAGTTGATAGACCACACCAAGGCATTATCTGGACGCACTTACAAGTTAGTCAATCAGCTCCTAGAGCACACCCAATCTCAGGCAGCTCGGTAA 1164 43.21 MATADYDLTQRIAPNLDRHLVFPLLEFLQERQLHPDEQILKSKIELLNKTNMVDYAMDIHKSLYHSEEVPQDMVERRAEVVARLKALEEGAAPIVAFLQNASAVLELRADKHYNLQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADYLYQYRALSTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVILNDPFLGKRVEDGNYSTVPLRDEFLENARLFIFETYCQMHRRIEMSVLAEKLNLSYEDAERWIANLIRGSKLDARIDSKSGTVIMEPNHPNVYEQLIDHTKALSGRTYKLVNQLLEHTQSQAAR 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 54606949 54610093 + Bda018089.1 Bda03g01551 4810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01551 387 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 4 262 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bda03g01551 387 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 262 385 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bda03g01551 387 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 4 379 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bda03g01551 387 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 4 262 - -
Bda03g01551 387 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 262 385 - -
Bda03g01551 387 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 282 366 - -
Bda03g01551 387 Pfam eIF3 subunit 6 N terminal domain 7 139 IPR019010 -
Bda03g01551 387 Pfam PCI domain 279 349 IPR000717 -
Bda03g01551 387 SMART eIF3_N_2 7 139 IPR019010 -
Bda03g01551 387 SUPERFAMILY TPR-like 122 195 IPR011990 GO:0005515
Bda03g01551 387 SUPERFAMILY Winged helix DNA-binding domain 282 353 IPR036390 -
Bda03g01551 387 ProSiteProfiles PCI domain profile. 187 353 IPR000717 -
Bda03g01551 387 SMART PINT_4 282 366 IPR000717 -
Bda03g01551 387 PIRSF Transl_init_eIF3e 261 387 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bda03g01551 387 PIRSF Transl_init_eIF3e 2 264 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bda03g01551 387 Gene3D - 266 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01551 Bda-Chr3:54606949 Bda15g00207 Bda-Chr15:4753226 0 dispersed
Bda03g01551 Bda-Chr3:54606949 Bda05g01037 Bda-Chr5:58813599 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01551 K03250 - rcu:8268657 686.026