Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01557 ATGGCTTCTTCTTCCTCTGATCCTAGTTTGAAGCACGAGGTTGGAGGCAGTAGCGGAGGAGGAGACGAGAATTCGGAGGCTGTCGTAGCTAACGACCAGCTTTTGCTTTACAAAGGGCTGAAGAAAGCAAAGAAAGAGAGAGGATGTACTGCCAAAGAGAGAATCAGCAAAATGCCTCCCTGTGCTGCTGGAAAGCGCAGTTCCATTTATCGCGGAGTAACCAGGCATAGATGGACGGGTCGTTATGAAGCTCATCTTTGGGATAAGAGAGCATACGATGAAGAGGAAGCTGCAGCTAGGGCATATGATCTTGCTGCGTTAAAGTATTGGGGTCCTGGAACACTCATTAATTTTCCAGTAACTGACTACACAAGGGATCTTGAAGAGATGCAAAATGTATCAAGAGAGGAGTACCTTGCATCTTTAAGAAGAAAGAGCAGTGGTTTCTCTAAAGGAATATCTAAATATCGCGGACTCTCGAGTCGATGGGAGTCATCATTTGGTCGGGTGGCTGGATCTGAGTACTTCAACAGCATAAATTATGGTACAAGTGATGATCCAGCAGCAGAGGGAGAATTTATAAATAACTTCTGTATCGAAAGGAAGATCGACTTGACAAGTTACATTAGATGGTGGGGGCCTAACAAAACTCGTCAAGTGGATCACGGCTCAAGATCAAACGAAGAAACTAAACATAGTTGTGCTGGAGAGGTTGAAAGTGAGCTTAAAACTATGGAATGGCAAGTTCAACATACTGAGCCATATGAAATGCCACGTTTGGGAATATATCACGACAGAAAGAAACAGAAAGGCTTCAAAGTCTCTGCCTTAAGCATCTTGTCTCGTTCAGCTGCCTACAAGAGCTTGCAAGAGAAAGCGTTGAAATTGCAGGAAAATGGCAATGAGAATTATGAAAATGAGAACAAAAATGCTGTTAAAATGGACCATGGGAAGACAGTTGAGAAATCTGATAATCAGACTGGTAGTGAGAAATTTGGAGTTGCCCAAGGAATGAGCGGAGAATTGGCTATTCAAAGAAATATTTTCCCATTGACCCCTTTCTTAACAGCGCCACTTCTGACGAGCTATAGTAATGTTGATCCATTAGTTGATCCCATTCTTTGGTCGTCTATGGTTCCTGTTCTTCCTGCTGAACTTCATCGTCCAGCTGAGGTTTGTCTATTCTGTACAATTCTGTCGTAA 1203 43.06 MASSSSDPSLKHEVGGSSGGGDENSEAVVANDQLLLYKGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKRAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSKGISKYRGLSSRWESSFGRVAGSEYFNSINYGTSDDPAAEGEFINNFCIERKIDLTSYIRWWGPNKTRQVDHGSRSNEETKHSCAGEVESELKTMEWQVQHTEPYEMPRLGIYHDRKKQKGFKVSALSILSRSAAYKSLQEKALKLQENGNENYENENKNAVKMDHGKTVEKSDNQTGSEKFGVAQGMSGELAIQRNIFPLTPFLTAPLLTSYSNVDPLVDPILWSSMVPVLPAELHRPAEVCLFCTILS 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 54748972 54752270 - Bda018097.1 Bda03g01557 4816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01557 400 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Bda03g01557 400 PRINTS Ethylene responsive element binding protein signature 101 121 IPR001471 GO:0003700|GO:0006355
Bda03g01557 400 MobiDBLite consensus disorder prediction 1 25 - -
Bda03g01557 400 ProSiteProfiles AP2/ERF domain profile. 69 119 IPR001471 GO:0003700|GO:0006355
Bda03g01557 400 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 380 - -
Bda03g01557 400 Pfam AP2 domain 69 111 IPR001471 GO:0003700|GO:0006355
Bda03g01557 400 SMART rav1_2 69 125 IPR001471 GO:0003700|GO:0006355
Bda03g01557 400 SUPERFAMILY DNA-binding domain 68 120 IPR016177 GO:0003677
Bda03g01557 400 Coils Coil 287 314 - -
Bda03g01557 400 PANTHER BNAA03G19580D PROTEIN 2 380 - -
Bda03g01557 400 Gene3D AP2/ERF domain 69 121 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01557 Bda-Chr3:54748972 Bda01g02255 Bda-Chr1:58302655 8.44E-07 dispersed
Bda03g01557 Bda-Chr3:54748972 Bda13g01680 Bda-Chr13:40175782 4.33E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15752 PF00847 AP2 1.00E-05 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01557 K09285 - cit:102624476 560.836