Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01564 TCCACAATGGGAACTCCGGAATTCCCAGATCTTGGAAAGCACTGTAGCGTTGAAGATTGCAAACTGATTGATTTCTTGCCCTTCACGTGTGATCGCTGCCGCCAGGTTTTTTGTTTAGAGCATAGGAGCTACATTAAGCATAATTGTCCCAAAGCCGACAAAAAAGACGTCACTGTCGTCATTTGTCCGCTCTGTGCAAATGGAGTTCGTCTAATTCCCGACGAAGATCCGAACATTACATGGGACAGACACGTCAACTCCGAATGCGATCCATCAAATTACGAGAAAGCGACGAAGAAGAAAAAGTGCCCGGTTACCGGCTGCAGGGAAACCTTAACATTCTCAAACACGATTAAGTGCAGGGATTGCTTGCTAGACCATTGTTTGAAGCACAGATTTGGACCCGACCATAAATGTCCTGGACCGAAGAAACCAGAAGCAAGTTTTCCATTTATTGGTCTTTTAAGTCGGAGTATAAAAGAAGATCCAAAGCCTAATCGGGCACCTAAGTCATCTTCTTCGCCTAAGTGGGCTACAAGCTTTCTCAATGCAGCCTCCACTGGCATAGGGAAAATAAGTGGGGAGATTAGCCAAGCCTGGCAGATTGCTCGAGATGGGGTCGGATCCAGCAGCTCGAATTTCGGCGGAAATAAACAGGAGGAATGCCCCCAATGCCACGCAAGATTTTCTTCTTTGACGACTTTGGTAGATCACGTTGAAAAAGTGCACGAAAAGAGTAGAAAGGTTGTCGATGTCTGTCCAAAATGTAGTCGGGGATTTCGGGATCCAGTTGCACTAGTAGAACACGTCGAAAGAGATCACGGCGGAACTTCAAAGGCTTAG 843 46.38 STMGTPEFPDLGKHCSVEDCKLIDFLPFTCDRCRQVFCLEHRSYIKHNCPKADKKDVTVVICPLCANGVRLIPDEDPNITWDRHVNSECDPSNYEKATKKKKCPVTGCRETLTFSNTIKCRDCLLDHCLKHRFGPDHKCPGPKKPEASFPFIGLLSRSIKEDPKPNRAPKSSSSPKWATSFLNAASTGIGKISGEISQAWQIARDGVGSSSSNFGGNKQEECPQCHARFSSLTTLVDHVEKVHEKSRKVVDVCPKCSRGFRDPVALVEHVERDHGGTSKA 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 54842151 54843641 + Bda018106.1 Bda03g01564 4823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01564 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 248 IPR013087 -
Bda03g01564 280 SUPERFAMILY AN1-like Zinc finger 7 52 IPR035896 -
Bda03g01564 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 279 IPR013087 -
Bda03g01564 280 ProSitePatterns Zinc finger C2H2 type domain signature. 253 274 IPR013087 -
Bda03g01564 280 Gene3D Classic Zinc Finger 201 279 - -
Bda03g01564 280 SMART c2h2final6 220 243 IPR013087 -
Bda03g01564 280 SMART c2h2final6 251 274 IPR013087 -
Bda03g01564 280 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 3 280 - -
Bda03g01564 280 ProSiteProfiles Zinc finger AN1-type profile. 9 57 IPR000058 GO:0008270
Bda03g01564 280 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Bda03g01564 280 SMART AN1_Zf_4 15 54 IPR000058 GO:0008270
Bda03g01564 280 Pfam AN1-like Zinc finger 103 143 IPR000058 GO:0008270
Bda03g01564 280 Pfam AN1-like Zinc finger 15 54 IPR000058 GO:0008270
Bda03g01564 280 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Bda03g01564 280 Pfam C2H2-type zinc finger 221 243 - -
Bda03g01564 280 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 3 280 - -
Bda03g01564 280 Gene3D - 83 149 IPR035896 -
Bda03g01564 280 Gene3D - 2 61 IPR035896 -
Bda03g01564 280 SUPERFAMILY AN1-like Zinc finger 95 147 IPR035896 -
Bda03g01564 280 ProSitePatterns Zinc finger C2H2 type domain signature. 222 243 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01564 Bda-Chr3:54842151 Bda13g01663 Bda-Chr13:40071435 3.11E-35 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15753 PF01428 zf-AN1 1.40E-07 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01564 - - vvi:100255506 476.863