Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01584 ATGGCTCCCGGCGGTGGTGCTTACAAAGAAGTTCTACAATCCCATCCCTCGGTTTCAGATTATGACATAACAACGGCAAAATCAGACGTAAGTTCTTCGTTTACGAAGCTTTCGATCGGTCGACGCGAAATTTCCTCAACCAACGGTGTACATGAGTTGCTCGAGTGCCCTGTCTGTATGAGTTTGATGTACCCTCCAATTCATCAGTGCCCAAACGGCCACACGCTGTGTTCGAACTGTAAGATCCGAGTGCACAACTGCTGCCCAACTTGCCGAAACGAGCTTGGCGACATTAGGTGCTTGGCTTTGGAAAAAGTGGCCGAATCTTTGGAACTTCCATGCCAGTACCAGAGCTTAGGTTGTCACGATATTTTTCCGTACTACTCGAAGCTCAAGCATGAGCAAAATTGTCGGTTCCGGCCTTTCAATTGCTCCTATGCTGGCTCAGAGTGCTCCGTCACGGGCGACATTCCGACCCTCGTTGCACATCTCAAGGACGATCACAAGGTCGACATGCACGATGGGTGTACCTTCAACCATCGATACGTCAAATCCAATCCCGACGAAGTTGAGAATGCCACTTGGATGCTTACGGTCTTCAACTGCTTTGGTCGTCAATTCTGCTTGCACTTCGAGGCTTTCCTCTTAGGCTCGGCTCCGGTTTATATGGCCTTTTTACGGTTTATGGGGGACGATAACGATGCCAAAAAATTTAGGTACACATTGGAAGTGGGTGGCTTTGGTAGAAAACTAATTTGGCAAGGAATTCCGAGGAGCATACGAGACGATCATGTGAAAGTACGTGATAGTGAGGACGGACTCATTATTCAGAAGAATCTCGCACTCTACTTCTCCGGTGGAGACCGGCAAGAGCTGAAGTTAAGGGTCACCGGGCGAATTTGGAAAGAAGAATAA 915 48.42 MAPGGGAYKEVLQSHPSVSDYDITTAKSDVSSSFTKLSIGRREISSTNGVHELLECPVCMSLMYPPIHQCPNGHTLCSNCKIRVHNCCPTCRNELGDIRCLALEKVAESLELPCQYQSLGCHDIFPYYSKLKHEQNCRFRPFNCSYAGSECSVTGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKSNPDEVENATWMLTVFNCFGRQFCLHFEAFLLGSAPVYMAFLRFMGDDNDAKKFRYTLEVGGFGRKLIWQGIPRSIRDDHVKVRDSEDGLIIQKNLALYFSGGDRQELKLRVTGRIWKEE 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 55093329 55094804 - Bda018129.1 Bda03g01584 4843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01584 304 CDD RING-HC_SIAHs 54 92 - -
Bda03g01584 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Bda03g01584 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 303 - -
Bda03g01584 304 SUPERFAMILY RING/U-box 49 95 - -
Bda03g01584 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 163 IPR013083 -
Bda03g01584 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 164 297 IPR008974 GO:0005515
Bda03g01584 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Bda03g01584 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 303 - -
Bda03g01584 304 SUPERFAMILY TRAF domain-like 109 301 - -
Bda03g01584 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 108 IPR013083 -
Bda03g01584 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g01584 Bda05g01268 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01584 Bda-Chr3:55093329 Bda05g00126 Bda-Chr5:5975431 1.15E-161 dispersed
Bda03g01584 Bda-Chr3:55093329 Bda05g01095 Bda-Chr5:59295629 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01584 K04506 - rcu:8260973 558.14