Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01592 CAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTATTTCCTAGCATTGTAGGACGTCCTCGTCACACTGGTGTAATGGTTGGTATGGGTCAAAAGGATGCTTATGTTGGTGACGAGGCTCAATCCAAGAGAGGTATTTTGACATTAAAATACCCAATCGAGCATGGTATTGTTAGCAATTGGGATGACATGGAAAAAATTTGGCACCACACATTCTATAATGAGCTTCGTGTGGCTCCGGAAGAGCATCCAGTTCTCCTCACAGAAGCCCCTCTTAATCCCAAGGCTAATCGTGAAAAGATGACACAAATTATGTTTGAGACCTTCAATACTCCGGCAATGTATGTAGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTTCTGGATTCTGGAGATGGTGTCAGCCATACAGTTCCAATATATGAAGGATATGCCCTTCCACATGCCATCCTTCGTTTGGATCTTGCAGGCAGAGATCTCACAGACGCCCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACTGCTGAACGTGAAATTGTAAGAGACGTGAAAGAGAAATTAGCTTACATTGCCCTCGACTATGAACAAGAGCTTGAAACATCAAAAACCAGTTCTTCGGTGGAGAAGAGCTACGAGCTACCAGATGGACAAGTGATCACAATTGGTGCTGAAAGATTCAGATGCCCTGAAGTACTCTTCCAGCCATCGATGATCGGAATGGAAGCTGCTGGCATACACGAAACAACGTACAACTCTATCATGAAGTGTGATGTTGACATTAGGAAGGATCTTTATGGCAACATCGTGCTCAGTGGCGGTTCCACTATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAGATTACAGCATTAGCTCCCAGTAGCATGAAGATTAAGGTGGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGTTCCATTTTAGCTTCTCTCAGCACTTTCCAACAGGTACATAATCTTAATCAATCAGACAACAGTTGCATCATGTTTTTGTCACAAATTTGGTCACTTTTTACATAA 1083 44.04 QAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVHNLNQSDNSCIMFLSQIWSLFT 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 55221205 55222509 + Bda018140.1 Bda03g01592 4851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01592 360 ProSitePatterns Actins and actin-related proteins signature. 87 99 IPR020902 -
Bda03g01592 360 ProSitePatterns Actins signature 1. 36 46 IPR004001 -
Bda03g01592 360 Gene3D - 121 321 - -
Bda03g01592 360 SUPERFAMILY Actin-like ATPase domain 130 338 IPR043129 -
Bda03g01592 360 CDD NBD_sugar-kinase_HSP70_actin 57 164 - -
Bda03g01592 360 PANTHER ACTIN 1 341 IPR004000 -
Bda03g01592 360 Gene3D - 2 339 - -
Bda03g01592 360 SUPERFAMILY Actin-like ATPase domain 2 136 IPR043129 -
Bda03g01592 360 PANTHER ACTIN-4 1 341 - -
Bda03g01592 360 Pfam Actin 2 338 IPR004000 -
Bda03g01592 360 PRINTS Actin signature 219 235 IPR004000 -
Bda03g01592 360 PRINTS Actin signature 9 18 IPR004000 -
Bda03g01592 360 PRINTS Actin signature 44 66 IPR004000 -
Bda03g01592 360 PRINTS Actin signature 123 142 IPR004000 -
Bda03g01592 360 PRINTS Actin signature 32 43 IPR004000 -
Bda03g01592 360 PRINTS Actin signature 98 111 IPR004000 -
Bda03g01592 360 Gene3D Actin; Chain A, domain 4 163 254 - -
Bda03g01592 360 SMART actin_3 2 349 IPR004000 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g01592 Bda05g01088 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01592 Bda-Chr3:55221205 Bda14g00128 Bda-Chr14:873558 0 dispersed
Bda05g00660 Bda-Chr5:54948986 Bda03g01592 Bda-Chr3:55221205 7.20E-42 transposed
Bda03g01592 Bda-Chr3:55221205 Bda05g01088 Bda-Chr5:59231392 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01592 K10355 - psom:113310417 663.685