Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01592 CAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTATTTCCTAGCATTGTAGGACGTCCTCGTCACACTGGTGTAATGGTTGGTATGGGTCAAAAGGATGCTTATGTTGGTGACGAGGCTCAATCCAAGAGAGGTATTTTGACATTAAAATACCCAATCGAGCATGGTATTGTTAGCAATTGGGATGACATGGAAAAAATTTGGCACCACACATTCTATAATGAGCTTCGTGTGGCTCCGGAAGAGCATCCAGTTCTCCTCACAGAAGCCCCTCTTAATCCCAAGGCTAATCGTGAAAAGATGACACAAATTATGTTTGAGACCTTCAATACTCCGGCAATGTATGTAGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTTCTGGATTCTGGAGATGGTGTCAGCCATACAGTTCCAATATATGAAGGATATGCCCTTCCACATGCCATCCTTCGTTTGGATCTTGCAGGCAGAGATCTCACAGACGCCCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACTGCTGAACGTGAAATTGTAAGAGACGTGAAAGAGAAATTAGCTTACATTGCCCTCGACTATGAACAAGAGCTTGAAACATCAAAAACCAGTTCTTCGGTGGAGAAGAGCTACGAGCTACCAGATGGACAAGTGATCACAATTGGTGCTGAAAGATTCAGATGCCCTGAAGTACTCTTCCAGCCATCGATGATCGGAATGGAAGCTGCTGGCATACACGAAACAACGTACAACTCTATCATGAAGTGTGATGTTGACATTAGGAAGGATCTTTATGGCAACATCGTGCTCAGTGGCGGTTCCACTATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAGATTACAGCATTAGCTCCCAGTAGCATGAAGATTAAGGTGGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGTTCCATTTTAGCTTCTCTCAGCACTTTCCAACAGGTACATAATCTTAATCAATCAGACAACAGTTGCATCATGTTTTTGTCACAAATTTGGTCACTTTTTACATAA 1083 44.04 QAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVHNLNQSDNSCIMFLSQIWSLFT 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 55221205 55222509 + Bda018140.1 Bda03g01592 4851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01592 360 ProSitePatterns Actins and actin-related proteins signature. 87 99 IPR020902 -
Bda03g01592 360 ProSitePatterns Actins signature 1. 36 46 IPR004001 -
Bda03g01592 360 Gene3D - 121 321 - -
Bda03g01592 360 SUPERFAMILY Actin-like ATPase domain 130 338 IPR043129 -
Bda03g01592 360 CDD NBD_sugar-kinase_HSP70_actin 57 164 - -
Bda03g01592 360 PANTHER ACTIN 1 341 IPR004000 -
Bda03g01592 360 Gene3D - 2 339 - -
Bda03g01592 360 SUPERFAMILY Actin-like ATPase domain 2 136 IPR043129 -
Bda03g01592 360 PANTHER ACTIN-4 1 341 - -
Bda03g01592 360 Pfam Actin 2 338 IPR004000 -
Bda03g01592 360 PRINTS Actin signature 219 235 IPR004000 -
Bda03g01592 360 PRINTS Actin signature 9 18 IPR004000 -
Bda03g01592 360 PRINTS Actin signature 44 66 IPR004000 -
Bda03g01592 360 PRINTS Actin signature 123 142 IPR004000 -
Bda03g01592 360 PRINTS Actin signature 32 43 IPR004000 -
Bda03g01592 360 PRINTS Actin signature 98 111 IPR004000 -
Bda03g01592 360 Gene3D Actin; Chain A, domain 4 163 254 - -
Bda03g01592 360 SMART actin_3 2 349 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01592 K10355 ACTF; actin, other eukaryote - psom:113310417 663.685
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01592 Bda05g01088 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01592 Bda-Chr3:55221205 Bda14g00128 Bda-Chr14:873558 0 dispersed
Bda05g00660 Bda-Chr5:54948986 Bda03g01592 Bda-Chr3:55221205 7.20E-42 transposed
Bda03g01592 Bda-Chr3:55221205 Bda05g01088 Bda-Chr5:59231392 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1271 . . . . Bpe04g01456 Bpe03g01148 . . Cmo06g00095 Cmo14g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02242 . Blo09g00434 Bda03g01592 Bda05g01088 . . . . Sed14g0483 . . Cma06g00102 . Car06g00084 Car14g00382 Cpe03g00368 . Bhi11g02537 Tan08g1503 Cmetu10g1839 Lac10g2624 Hepe05g0523 . . Cla10g01670 Cam10g1718 Cec10g1770 Cco10g1738 Clacu10g1739 Cmu10g2489 Cre10g1871 Lsi03g01737 Csa03g03574 Chy04g01779 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.7e-214 739.6
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.7e-214 739.6
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.7e-214 739.6
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 7.7e-214 739.6
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 1.7e-213 738.4
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT2G37620 96.2 2.3e-189 658.3
Bda09g01504 . 1 309 Cytoskeleton Gene Families AT2G37620 96.1 6.0e-174 607.1
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT2G37620 96.2 7.8e-174 606.7
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.9e-213 737.6
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.9e-213 737.6
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.9e-213 737.6
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT5G59370 95.2 2.1e-211 731.5
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.3e-210 728.0
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT5G59370 96.2 9.5e-188 652.9
Bda09g01504 . 1 308 Cytoskeleton Gene Families AT5G59370 97.1 1.3e-173 605.9
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT5G59370 96.2 3.3e-172 601.3
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.3e-213 738.8
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.3e-213 738.8
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.3e-213 738.8
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT3G46520 95.5 9.4e-212 732.6
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 1.0e-210 729.2
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT3G46520 96.4 4.3e-188 654.1
Bda09g01504 . 1 308 Cytoskeleton Gene Families AT3G46520 97.4 6.0e-174 607.1
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT3G46520 96.5 1.5e-172 602.4
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.8e-215 745.0
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.8e-215 745.0
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.8e-215 745.0
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.9e-213 737.6
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 6.5e-213 736.5
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT3G12110 96.7 7.8e-190 659.8
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT3G12110 96.8 2.7e-174 608.2
Bda09g01504 . 1 309 Cytoskeleton Gene Families AT3G12110 96.4 2.7e-174 608.2
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 5.7e-209 723.4
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.5e-209 723.0
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.2e-208 721.5
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.2e-208 721.5
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.2e-208 721.5
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT3G18780 92.9 5.8e-185 643.7
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT3G18780 93.3 2.4e-170 595.1
Bda09g01504 . 1 308 Cytoskeleton Gene Families AT3G18780 92.2 4.4e-169 590.9
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.0e-209 724.9
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.6e-209 724.5
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.5e-209 723.0
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.5e-209 723.0
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.5e-209 723.0
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT1G49240 92.9 5.8e-185 643.7
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT1G49240 93.3 2.4e-170 595.1
Bda09g01504 . 1 308 Cytoskeleton Gene Families AT1G49240 92.5 1.5e-169 592.4
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 2.6e-217 751.1
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 5.7e-217 750.0
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.3e-213 738.8
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.3e-213 738.8
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.3e-213 738.8
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT5G09810 96.4 3.0e-189 657.9
Bda09g01504 . 1 309 Cytoskeleton Gene Families AT5G09810 96.4 7.8e-174 606.7
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT5G09810 96.5 1.0e-173 606.3
Bda01g02037 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 77.9 2.7e-57 218.0
Bda11g01079 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 77.1 7.9e-57 216.5
Bda09g01121 CCT,ECH 1 133 Cytoskeleton Gene Families AT2G19760 74.4 3.7e-54 207.6
Bda02g00405 . 1 133 Cytoskeleton Gene Families AT2G19760 74.4 6.3e-54 206.8
Bda01g02037 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 77.1 5.1e-56 213.8
Bda02g00405 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-55 212.2
Bda09g01121 CCT,ECH 1 133 Cytoskeleton Gene Families AT4G29350 75.9 3.3e-55 211.1
Bda11g01079 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 75.6 1.3e-54 209.1
Bda01g02037 BCT,CCT,ECH 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.0e-37 151.8
Bda09g01121 CCT,ECH 1 133 Cytoskeleton Gene Families AT4G29340 79.1 3.2e-61 231.1
Bda02g00405 . 1 133 Cytoskeleton Gene Families AT4G29340 79.1 1.6e-60 228.8
Bda01g02037 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 75.4 2.8e-57 218.0
Bda11g01079 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 71.6 7.6e-55 209.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276