Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01600 CTTGGAGGGAATAAGTTTCATGTATGGGACACCCCACCTTGGAATTTTCCTTTGGATTCTGTACCTAGGAATCAAAACATTAGTGGCCCTCCTACGTCTGAGTCAAGTGCAATTGAGAATAGTCCCTCTATTAGAAAGATTGAGCATAAGAAAAGAAGGCTGGGACCTGGTGGTATAGCTTTCATGGTTGGTGGAGCAACTTTAATGGCAACTTGTGTAGCTCTATACGTTGTTCTCCAAGTAAATCGATCCCGAGCAAATAAGCGTACAAGCTTGGCAACTTATGATGCTTCTTCACATTCTCTTCCTATCAACACAACTGAAGTAGAGGAGATTTCTTTTACTCTGCCACAGAGCAGGCAGATGATGGCTGTCCGTTCTCCACCCCTTCTTGCTCCAATGCGCAAATCTCCAATATGCCACACGGGGACTGAAATGCCTTTAAAAAGAAAAAGTATTTCTGAGAGAGGCAGATTGTCATTCAGAACAAAAATTTTTACTGTGGCAGAGCTTCAATTTGCTACAAACAGCTTCAGTGAAGAAAACCTTCTTGGAGAGGGATCTCTTGGTTCCGTTTACAAAGCAAAATTTCCTGATGGTCAAGTCTTGGCTGTGAAGAATGTCAGCCTGGTGGCACTCTCTGTCACTGAAGAAGATCAGTTCTTGGATGTGGTTTGGACGGCATCATGTTTGAGGCATCCTAACATAGTACCACTAATCGGTTACTGCACAGATCATGGACAGCATCTTCTTGTGTACGAATACATCCCCAATTTGACTCTTTATGATGCCTTGCATTGTGATGCCTGCAAACCTCTATCATGGAGTATGAGAATCCAGATTTCCCTCGGCATTGCAAGGGCTTTGGATTATTTGCACTCCACATTTTCACAACCTACTGCTCATTACAATCTGAAGGCTGCCAATATCTTACTAGACAAAGATCTAACGCCTCATATTTCTGACTGCGGGCTAGCTGTTTTGAGGCCACTTACTAGTACCAGAGTTAAAATTAAGGCAAGTACCTTGGAGAAACTCTATTGTTCTGCATCTGAAATTGCTATTGGTGATAGCGGCTACATTGCACCTGAACACGGCCAACCAGGAAGTGATGTTACAAAGAGTGACGTGTATGCCTTTGGAGTTTTGCTGTTAGAGCTGGTAACAGGAAGGAAACCCTTTGACGATTCAAGACATATAAAAGAGAAATCTTTAGTAAAGTGGGCTTCGTATAGACTTCATGACAATGAGAGTTTAGAGCAGATGGTTGATCCAAGAATTAAAGGAACATTTTCCTCTAAGACTCTCTCCCACTATACTGATATAGTCTCCCTCTGTATACAGCAGCCAGTGCAGGCATTCCGGCCACCAATGACAGAAATAGTGGAATCACTTGCCAGAATTGTCCGGCAGGTAAAGCAGGCAAAAAGTGGTGCACCAGAACCAGAAGGTACTGAAATTGTTCCTCCCGATATGTCATTTCGTTCGACCAATACCCGCTTCATAGGCTCCCCCTCTTTGAGCATATTATCCAGCTGA 1539 43.34 LGGNKFHVWDTPPWNFPLDSVPRNQNISGPPTSESSAIENSPSIRKIEHKKRRLGPGGIAFMVGGATLMATCVALYVVLQVNRSRANKRTSLATYDASSHSLPINTTEVEEISFTLPQSRQMMAVRSPPLLAPMRKSPICHTGTEMPLKRKSISERGRLSFRTKIFTVAELQFATNSFSEENLLGEGSLGSVYKAKFPDGQVLAVKNVSLVALSVTEEDQFLDVVWTASCLRHPNIVPLIGYCTDHGQHLLVYEYIPNLTLYDALHCDACKPLSWSMRIQISLGIARALDYLHSTFSQPTAHYNLKAANILLDKDLTPHISDCGLAVLRPLTSTRVKIKASTLEKLYCSASEIAIGDSGYIAPEHGQPGSDVTKSDVYAFGVLLLELVTGRKPFDDSRHIKEKSLVKWASYRLHDNESLEQMVDPRIKGTFSSKTLSHYTDIVSLCIQQPVQAFRPPMTEIVESLARIVRQVKQAKSGAPEPEGTEIVPPDMSFRSTNTRFIGSPSLSILSS 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 55312020 55314987 + Bda018151.1 Bda03g01600 4859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01600 512 MobiDBLite consensus disorder prediction 19 42 - -
Bda03g01600 512 SUPERFAMILY Protein kinase-like (PK-like) 156 465 IPR011009 -
Bda03g01600 512 Gene3D Transferase(Phosphotransferase) domain 1 256 483 - -
Bda03g01600 512 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 9 476 - -
Bda03g01600 512 Gene3D Phosphorylase Kinase; domain 1 141 255 - -
Bda03g01600 512 ProSiteProfiles Protein kinase domain profile. 178 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g01600 512 Pfam Protein kinase domain 179 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g01600 512 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 476 - -
Bda03g01600 512 MobiDBLite consensus disorder prediction 19 43 - -
Bda03g01600 512 MobiDBLite consensus disorder prediction 475 495 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01600 - - - qsu:112030392 622.468
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01600 Bda-Chr3:55312020 Bda13g00653 Bda-Chr13:7491609 2.50E-82 dispersed
Bda03g01600 Bda-Chr3:55312020 Bda09g01596 Bda-Chr9:47377168 2.19E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1247 . . . . Bpe04g01463 . Bma04g01505 . Cmo06g00081 . . . . . . . Cpe08g01391 . . . . . . . . . . . . . . . . . Cone19ag0495 . . . Cme04g02226 . Blo09g00427 Bda03g01600 . . . . . . . . Cma06g00088 . Car06g00077 Car14g00396 Cpe03g00382 . . . . . . . . Cla10g01655 . . . . . . Lsi03g01722 Csa03g03593 Chy04g01764 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda06g00321 . 24 694 Strubbelig Receptor Gene Family AT4G03390 55.8 5.5e-182 634.8
Bda13g00653 . 21 566 Strubbelig Receptor Gene Family AT4G03390 59.1 4.1e-169 592.0
Bda07g01009 . 17 707 Strubbelig Receptor Gene Family AT4G03390 54.5 2.3e-164 576.2
Bda03g01600 . 3 512 Strubbelig Receptor Gene Family AT5G06820 51.7 1.9e-131 466.8
Bda09g01596 . 407 700 Strubbelig Receptor Gene Family AT1G11130 54.2 5.0e-86 315.8
Bda02g00925 . 353 647 Strubbelig Receptor Gene Family AT1G11130 51.2 1.9e-80 297.4
Bda03g01600 . 3 512 Strubbelig Receptor Gene Family AT5G06820 51.7 1.9e-131 466.8
Bda06g00321 . 24 694 Strubbelig Receptor Gene Family AT4G03390 55.8 5.5e-182 634.8
Bda13g00653 . 21 566 Strubbelig Receptor Gene Family AT4G03390 59.1 4.1e-169 592.0
Bda07g01009 . 17 707 Strubbelig Receptor Gene Family AT4G03390 54.5 2.3e-164 576.2
Bda09g01596 . 50 723 Strubbelig Receptor Gene Family AT1G53730 51.5 1.1e-144 510.8
Bda09g01596 . 226 730 Strubbelig Receptor Gene Family AT4G22130 69.7 2.1e-175 612.5
Bda02g00925 . 136 677 Strubbelig Receptor Gene Family AT4G22130 59.6 1.6e-162 569.7
Bda13g00653 . 255 560 Strubbelig Receptor Gene Family AT4G22130 58.0 7.2e-99 358.2
Bda07g01009 . 431 707 Strubbelig Receptor Gene Family AT4G22130 59.0 4.0e-89 325.9
Bda06g00321 . 429 686 Strubbelig Receptor Gene Family AT4G22130 59.8 1.8e-86 317.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69573 PF00069 Pkinase 3.10E-32 CL0016 Bda PK