Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01602 ACTGTGGATAAATATGAGCAGATGTTGAGAAGGCTTGCTCAGAATCGAGAGGCAGCTAGGAAAAGCAGGCTTAGAAAGAAGGCATATGTCCAGCATTTAGAGCTAAGCAGAATGAAGCTTACTCAACTAGAACAAGAGCTTCAGAGAAGTAAAGCTCAGGTGCAATATGCATCATTATTTGACCTAGAGTATCGACGATGGCTCGAAGAGCATGACCGCCTGGTGTATGAGCTAAGAGTGGCGGTGGAAAATCATGTTGCTGAAAACGAGTTGAGGGTGTTCGTCGAGAGCTGCCTACTACATTACGATGAGATGACAAATCTGAAAAGAATGGCTGCTAAATCTGACGTCTTTCATCTCCTCTCCGGCCGGTGGAAGACTCCGGCTGAGCGATACTTCATGTGGATCGGTGGAATTAGACCTTCCGAACTCATCAAGATAATAGTGGGTCAAATGGACCAAGCCTTGAGTGAGCAGCAAATAATTGGAATTTGTGACTTACAACAATGGAGCCACGAGGGAGAAGAGGCTTTATCACAAGGTCTAGCAGCTCTGAATCAGTCTCTCTCGGAAGCCATAGCCTTTGATTCCTTGAGCTCTCTTCCTACCATGGCTGACTACATGAACCAGATGGCTATGGCCATGGCTAAGCTGTCCACTTACGAAGCTTTTCTTCTACAGGCAGCCGATATGAGACAACAGATAATTCGTCGAATGCATCAAATCTTGACGACTCGTCAAGCTGCATGGTGTTTTCTTGCCATTTCTGAGTATTTTCATCGTCTTCGAGCCCTCAATGCTCTGTGGTTTGCACGGGCTACCCACCATTTATAA 834 45.92 TVDKYEQMLRRLAQNREAARKSRLRKKAYVQHLELSRMKLTQLEQELQRSKAQVQYASLFDLEYRRWLEEHDRLVYELRVAVENHVAENELRVFVESCLLHYDEMTNLKRMAAKSDVFHLLSGRWKTPAERYFMWIGGIRPSELIKIIVGQMDQALSEQQIIGICDLQQWSHEGEEALSQGLAALNQSLSEAIAFDSLSSLPTMADYMNQMAMAMAKLSTYEAFLLQAADMRQQIIRRMHQILTTRQAAWCFLAISEYFHRLRALNALWFARATHHL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 55324750 55326736 + Bda018153.2 Bda03g01602 4861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01602 277 Coils Coil 33 53 - -
Bda03g01602 277 Pfam bZIP transcription factor 9 51 IPR004827 GO:0003700|GO:0006355
Bda03g01602 277 SMART brlzneu 3 66 IPR004827 GO:0003700|GO:0006355
Bda03g01602 277 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 10 25 IPR004827 GO:0003700|GO:0006355
Bda03g01602 277 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 5 55 IPR004827 GO:0003700|GO:0006355
Bda03g01602 277 PANTHER TRANSCRIPTION FACTOR TGA9 8 55 - -
Bda03g01602 277 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 56 275 - -
Bda03g01602 277 PANTHER TRANSCRIPTION FACTOR TGA9 56 275 - -
Bda03g01602 277 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 8 55 - -
Bda03g01602 277 Gene3D - 6 60 - -
Bda03g01602 277 Coils Coil 2 22 - -
Bda03g01602 277 Pfam Seed dormancy control 76 148 IPR025422 GO:0006351|GO:0043565
Bda03g01602 277 ProSiteProfiles DOG1 domain profile. 57 272 IPR025422 GO:0006351|GO:0043565
Bda03g01602 277 SUPERFAMILY Leucine zipper domain 9 53 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01602 Bda-Chr3:55324750 Bda07g00678 Bda-Chr7:8066215 9.58E-89 dispersed
Bda03g01602 Bda-Chr3:55324750 Bda05g01018 Bda-Chr5:58609526 3.22E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15755 PF14144 DOG1 1.00E-27 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01602 K14431 - csin:114307703 359.377