Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01613 ATGAATAGCTTGACTGTTCATACTGAAGATTCTTTTGTGAGTTTGCTTGAACTTGCTGCTAATGACGATATTGAGGGGTTCAAAAGATTAATTGAACTTGATCCTTCTGGCATTGATGAGGTTGGTCTATGGTATTGCCGCAAGAAAGGCTCGAAGCAGATGGTTAATGAGCATCGAACTCCATTAATGGTGGCTGCTACGTATGGTAGCCTCGAAGTTATGAAGCTGATTTTGTCATTGTCTGATGCTTATATAAATCGAGCTGTTGGATTTGATAAAACTACTGCCCTCCATTGTGCTGCCTCTGGTGGAGCAATAAACTGTGTTGATGCTGTGAAATTGCTTTTATCGGCAGGGGCTGATCCGAATTTGATTGACGGAAGTGGACATTATCCGATCGATGTCATTGCTGTTCCTCCAAAGCTTTCAGATTCAAAGTGTATCCTAGAAGAGCTTCTGAAAACAAATGGTTCTTCTGGTTCGATGGGAACGTTGAATTCTAATTCGCCTCCCCTTATGTCGTCCCCTCAAAAGATTTCTTTGGCTTTGGATTTTCCATATTCACAAGCTAATTCCAAATTCAACGATCTTCATGTCTCTTCTTCATCGGAGAAGAAAGAGTACCCTATTGATCCATCTCTCCCAGACATCAAGAACAGCATATACTCGACCGATGAATTTAGGATGTATTCGTTTAAGGTGCGGCCTTGTTCTCGTGCCTATTCACATGATTGGACAGAGTGCCCTTTCGTCCATCCGGGAGAAAATGCTCGAAGAAGGGATCCAAGGAAGTACCATTACAGCTGTGTTCCTTGTCCCGATTTCAGGAAAGGGGCTTGTAGGCGTGGAGATTTGTGTGAATATGCCCATGGAGTTTTCGAGTGTTGGCTCCACCCGGCTCAGTATAGAACACGACTCTGCAAAGATGGTACAAGTTGTGCTAGAAGAGTTTGCTTCTTTGCCCACACTGATGAGGAGCTCCGACCTTTATATGTATCGACTGGCTCTGCCGTTCCTTCTCCTCGGGCTGGTTCGTCTGGGGCTTCTGTACTGGATTATGCCTCGGCCATGAATATCTTGCCTGGTTCTCCGTCGGCGATGTCTGTTATGTCTCCCACGCCCTTCACTCCTCCAATGTCTCCCTCAGGGGCCCACTCTTCTTTGGCTTGGCCTCAGCCAAATGTTCCAGCATTGCATCTTCCCGGAAGCAATTTCCAGTCAAGTCGGCTGAGGTCGTCCGTAAATGCGAGAGATATTTTGACAGAGGATTTTGATTTACTTCCAGACTTTGATATTCAGCAACAACAACTTCTAAATGATCTATCTTGTCTCTCTCAGCAGAATATGGGTTCTAATTCTTTGAACCGTTCTGGTCGGATGAAAGCCTTAACCCCGTCGAATCTTGACGATCTGTTTTCTTCTGAGAGTTTGTCTCCTAGGTACACTGATCAGGCATTGGCTTCGGCTGTTTTCTCCCCCACTCATAAGTCAGCTGTTCTTAGCCAATTTCAGCAGCAGCAGAGTATGCTGTCTCCTATCAACACCAACTTCTCCCCTAAAAATGTGGATCACCCTCTTTTACAGGCATCATTTGGGGTACCATCTGGAAGAATGTCTCCGAGAAATGTGGAACCCATCTCACCGATCAGCTCCCGTCTGTCAATGTTGGCTCAGCGAGAGAAACAGCAACAGTTTCGCAGCCTCAGCTCCCGTGAACTCGGAGCGAATTCTCTGCATGGTGGTGGGTCAGCTGGAAGCAGCTCTTGGTCTAAATGGGGATCTTCCAATGGAAAGCCTGACTGGGCTGTTTCTACTGATGAATATGGTAAGATCCGCCGATCTTCTTCTTTTGAGCTAGGAAATAATGGGGAAGAGCCGGATTTATCATGGGTTCAATCTCTTGTCAAAGAATCGCCTACTGATATGAAGGAAAATCAGACAATTCCATTTTCCGGGAATGCAAACAACGGCAAGACAGCAATTGTAAGTTCTCAGATGGAATCGACCGATCACGCCGTTTTGGGGGCATGGCTAGAACAAATGCAGCTCGATAATCTGGTAGCACAACAAAATTAA 2076 45.66 MNSLTVHTEDSFVSLLELAANDDIEGFKRLIELDPSGIDEVGLWYCRKKGSKQMVNEHRTPLMVAATYGSLEVMKLILSLSDAYINRAVGFDKTTALHCAASGGAINCVDAVKLLLSAGADPNLIDGSGHYPIDVIAVPPKLSDSKCILEELLKTNGSSGSMGTLNSNSPPLMSSPQKISLALDFPYSQANSKFNDLHVSSSSEKKEYPIDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTSCARRVCFFAHTDEELRPLYVSTGSAVPSPRAGSSGASVLDYASAMNILPGSPSAMSVMSPTPFTPPMSPSGAHSSLAWPQPNVPALHLPGSNFQSSRLRSSVNARDILTEDFDLLPDFDIQQQQLLNDLSCLSQQNMGSNSLNRSGRMKALTPSNLDDLFSSESLSPRYTDQALASAVFSPTHKSAVLSQFQQQQSMLSPINTNFSPKNVDHPLLQASFGVPSGRMSPRNVEPISPISSRLSMLAQREKQQQFRSLSSRELGANSLHGGGSAGSSSWSKWGSSNGKPDWAVSTDEYGKIRRSSSFELGNNGEEPDLSWVQSLVKESPTDMKENQTIPFSGNANNGKTAIVSSQMESTDHAVLGAWLEQMQLDNLVAQQN 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 55407507 55409582 - Bda018164.1 Bda03g01613 4872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01613 691 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 688 - -
Bda03g01613 691 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 291 IPR000571 GO:0046872
Bda03g01613 691 Gene3D - 5 154 IPR036770 -
Bda03g01613 691 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Bda03g01613 691 Pfam Ankyrin repeats (3 copies) 24 126 IPR002110 GO:0005515
Bda03g01613 691 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Bda03g01613 691 PANTHER UNKEMPT FAMILY MEMBER 1 688 IPR045234 -
Bda03g01613 691 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Bda03g01613 691 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Bda03g01613 691 SUPERFAMILY Ankyrin repeat 11 137 IPR036770 -
Bda03g01613 691 SMART c3hfinal6 301 324 IPR000571 GO:0046872
Bda03g01613 691 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Bda03g01613 691 MobiDBLite consensus disorder prediction 573 601 - -
Bda03g01613 691 Gene3D - 268 329 - -
Bda03g01613 691 SMART ANK_2a 57 87 IPR002110 GO:0005515
Bda03g01613 691 SMART ANK_2a 92 124 IPR002110 GO:0005515
Bda03g01613 691 MobiDBLite consensus disorder prediction 573 603 - -
Bda03g01613 691 ProSiteProfiles Zinc finger C3H1-type profile. 271 293 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01613 Bda-Chr3:55407507 Bda05g01048 Bda-Chr5:58908454 0 dispersed
Bda03g01613 Bda-Chr3:55407507 Bda05g00457 Bda-Chr5:50858516 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15758 PF12796 Ank_2 9.00E-11 CL0465 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01613 - - mnt:21390368 1073.54