Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01627 ATGGCCGACGTCGATGTTCCTCCTTACTTTCTCTGCCCGATTTCTCTTGAAATCATGAAAGATCCGGTAACTGTTTCATCCGGGATAACCTACGATCGTCAAAGCATAGAGAAATGGTTGTATTCAAACAACAACGATTCTTGTCCGGTCACGAAACAACTCCTCGCCGGCTCTGATCTCACTCCTAACCATACTCTCCGGCGACTTCTGCAGGCGTGGTGCACCGTCAACGCCTCCAACGGCGTCGAGAGGATTCCGACGCCTAAACCTCCTATTACCAAAGCACAGATTAGCAAGATTCTCAACGATGGGAAATCGCCACTCTCTCAGATTAAATGTCTCAAGAAACTCCGATCCATCGCAGCTGAGAGCGAGACGAACAAACGTTGTATGGCAGCCGCCGGCGCCTTCGAGTTCTTAGCGTCGATAGTGGCGTCCTCCGTTTCTGACTCACCGTCAGAAGATTCCGGATATGTTTTTGAACGCACTCGAGCGTGTGATGAGGCTTTGAGTATTCTGCATAATCTTCAAATCTTCGAAGCAGGAATGAAAACTCTCATCGGAAAGAATGGAGAATTCGTCGAAACGCTAGTCAAAGTAATGCACCAAGGAAGCTACAATTCAAGAGCCTATGCAACTATTTTACTGAAATCATTTCTGGAACTCGCCGATCCGATAAACCTAGCCAATCTTAGAGTCGAGTTCTTTGCCGAAATTATTCAAGTTCTCAAAGATCAAATCTCCCACAAGTGTTCCATATCTGCACTGCAAATGCTCATAAACCTCCTCCCGTGGGGAAAAAATCGGATAAAAGCCGTCGAGGCCGGTGGCGTAGTAGTTCTAATTGAGCTTCTTCTCAGCTCCACCGAGCGCCGGCCATGTGAGATGGCGCTCACAGCCTTAGACTTGCTATGTGGGTACGCCGACGGGCGAGCGGAGTTGCTCCGCCACGGAGCGGGGATGGCGGTGGTGTCGAAGAAGATTCTCAGAGTTACTGCCGTCCGGATTCTGAATTCGATAGCGAAATATTCGGCAACTCCGGCCGTTCTTCAGGAAATGCTGAGTCTGGGTGTCGTCGCAAAACTGTGTCTGGTTCTTCAGGTGGAATGTGGAAGCAAGACGACGGAGAAAGCGAGGGAGATTCTGAAGCTTCATTCTCGTTCATGGCGGAATTCGCCATGCATTCCTGCTAATTTGCTGTCATCTTATCCATCTTCTTGGGATTAA 1227 48.98 MADVDVPPYFLCPISLEIMKDPVTVSSGITYDRQSIEKWLYSNNNDSCPVTKQLLAGSDLTPNHTLRRLLQAWCTVNASNGVERIPTPKPPITKAQISKILNDGKSPLSQIKCLKKLRSIAAESETNKRCMAAAGAFEFLASIVASSVSDSPSEDSGYVFERTRACDEALSILHNLQIFEAGMKTLIGKNGEFVETLVKVMHQGSYNSRAYATILLKSFLELADPINLANLRVEFFAEIIQVLKDQISHKCSISALQMLINLLPWGKNRIKAVEAGGVVVLIELLLSSTERRPCEMALTALDLLCGYADGRAELLRHGAGMAVVSKKILRVTAVRILNSIAKYSATPAVLQEMLSLGVVAKLCLVLQVECGSKTTEKAREILKLHSRSWRNSPCIPANLLSSYPSSWD 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 55631798 55633043 - Bda018181.2 Bda03g01627 4886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01627 408 Gene3D - 94 393 IPR011989 -
Bda03g01627 408 SUPERFAMILY RING/U-box 4 78 - -
Bda03g01627 408 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Bda03g01627 408 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Bda03g01627 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Bda03g01627 408 PANTHER WDSAM1 PROTEIN 1 405 IPR045185 GO:0061630
Bda03g01627 408 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Bda03g01627 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 405 - -
Bda03g01627 408 CDD RING-Ubox_PUB 10 53 IPR045210 -
Bda03g01627 408 SUPERFAMILY ARM repeat 97 369 IPR016024 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g01627 Bda05g01129 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01627 Bda-Chr3:55631798 Bda09g01390 Bda-Chr9:45807203 3.12E-98 dispersed
Bda08g00854 Bda-Chr8:14286390 Bda03g01627 Bda-Chr3:55631798 8.13E-34 dispersed
Bda13g01567 Bda-Chr13:38888529 Bda03g01627 Bda-Chr3:55631798 5.74E-37 dispersed
Bda02g00678 Bda-Chr2:47760594 Bda03g01627 Bda-Chr3:55631798 3.50E-151 wgd
Bda03g01627 Bda-Chr3:55631798 Bda05g01129 Bda-Chr5:59508493 7.11E-119 wgd
Bda03g01627 Bda-Chr3:55631798 Bda09g01389 Bda-Chr9:45801807 4.42E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01627 - - mnt:21399943 556.214