Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01628 ATGGGGACGTACTTTCAGGTTAATCCAGATATTCAAGCTTCTGATGGATTGCAAACGCTTGTACTTATGAATCCCGGCTATGTACAGTTCTCCGATCCACCGCCTCCGACCAACCTTTTATTCCTCAATTCCCTGGCCGGCAATTCCCTAGCTTCTCAGAATCTCCACCACGCGCCGCCATCTCAATCCCCGCACTTCACCGGCATGCCTTTGCCGGTTTCCCTTCCCCCTACCTCACAGGACCCTAATTCTCATCCGACGCATCCCCACCATATCTCCGCGTTGCATGGATTTATCCCCGGAGCTAAATTCAATCATTGGAATCCGATCAATTCCTCCACGGACGCGCGTGAACCACAACGCGCTACCCAAGGGCTTTCCCTCAGCCTTTCCTCTCAGCAGCCTGGTTTTGGGCTACTCCGAGCCGAACGAGATCCATCATCTCCATCTCAGCTCGCAGGCGAGGAGATTCGAGTCTCCGGCGGGTCATCCTCCATTTCCGGCAACACCAACGGCGGCGTTTCCGGTTTACACGGTGTGTTGCTTTGCTCAAAGTACTTGAAAGCGGCTCAAGAACTTCTCGACGAGGTCGTAAACGTCAGCACCGACGGAATCAAGAACGAGCCCACTAAAAAACCCACCGGGACAAAGATCACCGACGAGTCCTCCGGGACGGCAACCGACGACACTTCCGTCAGAATCGACCCAGCCGCGAAGGACAGTTCAGAGCTCACGACGGCTGAAAGACAGGAAATTCAGATGAAGAAAGCTAAACTTATAAGCATGCTTGATGAGGTGGAGCAAAGATACAGACAATATCATCATCAGATGCAGATAGTAATATCGTCGTTCGAGCAATCGACCGGAATTGGGTCGGCAAGAACGTACACTTCTCTGGCCCTCGAGACGATTTCGAAGCAATTCCGGTGTTTGAAAGACACGATTTCCGGCCAAATCAAGGCGGCAAACAAGAGTTTAGGGGAAGAAGATTGGGAGGGGGGTAAAATTGGAAGTTCAAGGCTGAAATTTGTGGATCATCAGCTTAGACAGCAGAGAGCTCTTCAACAATTGGGAATGATCCAGCAAAATGCTTGGAGACCCCAAAGAGGCCTCCCCGAGCGCTCTGTTTCGGTTCTTCGCGCTTGGCTTTTCGAACACTTTCTCCATCCTTATCCAAAGGATTCGGATAAGCAAATGCTGGCTAAGCAAACCGGGCTAACGAGGAGCCAGGTTTCGAATTGGTTTATAAATGCTCGAGTTCGGCTATGGAAGCCGATGGTGGAAGAAATGTACAAGGAGGAAACCAAGGACCAAGAACAGAATGGCTCTGCAGATAATAGGAGCATGATCAATGAAAATTCTCCTCCCAACTCCATTTCTCCAAGAGAAAAAGCTCCTCCAATCAAAATTCCGGAGAGTCATTCGACAAAGACAGTCTCTAAATCCGCCATTAGAGGAAATATTCAAAACTCATCTGGATCGAGGCTTCCCGGCTTGTCAAAGCTCGAAGATATTGCACAGGGATCGAGTCCAAAGAAACAAAAACACTCGGAAATGGCAATGCATTCTTCGCTGAATGTAATCTCGCCAATTGACATCGACGGGAAGCAAGCTCAGTCAAACCCGATGAACATTTCAACGAAAGTAGGCAATGAGAAGCAAAGCCGAGACGAATACTCATTCATGATGAACCAAGCTAATTTCGCAGGTGGATTCGGAGAATACCCGATCGAACGAATCGGCCGATACGATGACGACCAATTCACGCCTCGTTTTTCCACCAATGGTGTCTCGCTAACTCTCGGGCTCCCCCACCATAATTTTCTTCCAAACCAATCGATCCACGTCGGAAGACGGATAGAAATCGGCGAACCAAACGAGTTTTCTGGGATGAATTCTTCGACTCCTCATTCTACCACGGCTTTTGACAACATCGAAATTCAAAACAGAAAGCAATTTGTTGCACAATTGTTGCCGGATTTCGTGGTCTGA 1992 49.05 MGTYFQVNPDIQASDGLQTLVLMNPGYVQFSDPPPPTNLLFLNSLAGNSLASQNLHHAPPSQSPHFTGMPLPVSLPPTSQDPNSHPTHPHHISALHGFIPGAKFNHWNPINSSTDAREPQRATQGLSLSLSSQQPGFGLLRAERDPSSPSQLAGEEIRVSGGSSSISGNTNGGVSGLHGVLLCSKYLKAAQELLDEVVNVSTDGIKNEPTKKPTGTKITDESSGTATDDTSVRIDPAAKDSSELTTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQSTGIGSARTYTSLALETISKQFRCLKDTISGQIKAANKSLGEEDWEGGKIGSSRLKFVDHQLRQQRALQQLGMIQQNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYKEETKDQEQNGSADNRSMINENSPPNSISPREKAPPIKIPESHSTKTVSKSAIRGNIQNSSGSRLPGLSKLEDIAQGSSPKKQKHSEMAMHSSLNVISPIDIDGKQAQSNPMNISTKVGNEKQSRDEYSFMMNQANFAGGFGEYPIERIGRYDDDQFTPRFSTNGVSLTLGLPHHNFLPNQSIHVGRRIEIGEPNEFSGMNSSTPHSTTAFDNIEIQNRKQFVAQLLPDFVV 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 55639780 55642259 - Bda018182.1 Bda03g01628 4887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01628 663 CDD homeodomain 365 426 IPR001356 GO:0003677
Bda03g01628 663 SUPERFAMILY Homeodomain-like 366 431 IPR009057 -
Bda03g01628 663 MobiDBLite consensus disorder prediction 52 88 - -
Bda03g01628 663 Pfam Associated with HOX 180 316 IPR006563 -
Bda03g01628 663 MobiDBLite consensus disorder prediction 432 499 - -
Bda03g01628 663 Gene3D - 368 446 - -
Bda03g01628 663 ProSiteProfiles 'Homeobox' domain profile. 362 425 IPR001356 GO:0003677
Bda03g01628 663 MobiDBLite consensus disorder prediction 216 230 - -
Bda03g01628 663 SMART prehox3 175 317 IPR006563 -
Bda03g01628 663 MobiDBLite consensus disorder prediction 442 459 - -
Bda03g01628 663 Pfam Homeobox KN domain 382 421 IPR008422 GO:0003677|GO:0006355
Bda03g01628 663 MobiDBLite consensus disorder prediction 138 164 - -
Bda03g01628 663 MobiDBLite consensus disorder prediction 473 497 - -
Bda03g01628 663 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 628 - -
Bda03g01628 663 Coils Coil 249 269 - -
Bda03g01628 663 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 628 - -
Bda03g01628 663 SMART HOX_1 365 429 IPR001356 GO:0003677
Bda03g01628 663 MobiDBLite consensus disorder prediction 204 232 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00423 Bda03g01628 CCT
Bda03g00660 Bda03g01628 CCT
Bda03g01628 Bda05g01130 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01628 Bda-Chr3:55639780 Bda04g00315 Bda-Chr4:46953423 9.46E-86 dispersed
Bda09g01453 Bda-Chr9:46393445 Bda03g01628 Bda-Chr3:55639780 4.12E-64 dispersed
Bda01g00423 Bda-Chr1:30787966 Bda03g01628 Bda-Chr3:55639780 0 wgd
Bda03g00660 Bda-Chr3:5622800 Bda03g01628 Bda-Chr3:55639780 0 wgd
Bda03g01628 Bda-Chr3:55639780 Bda05g01130 Bda-Chr5:59513484 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15760 PF07526 POX 4.10E-47 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01628 - - jre:108982860 757.673