Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g01628 | ATGGGGACGTACTTTCAGGTTAATCCAGATATTCAAGCTTCTGATGGATTGCAAACGCTTGTACTTATGAATCCCGGCTATGTACAGTTCTCCGATCCACCGCCTCCGACCAACCTTTTATTCCTCAATTCCCTGGCCGGCAATTCCCTAGCTTCTCAGAATCTCCACCACGCGCCGCCATCTCAATCCCCGCACTTCACCGGCATGCCTTTGCCGGTTTCCCTTCCCCCTACCTCACAGGACCCTAATTCTCATCCGACGCATCCCCACCATATCTCCGCGTTGCATGGATTTATCCCCGGAGCTAAATTCAATCATTGGAATCCGATCAATTCCTCCACGGACGCGCGTGAACCACAACGCGCTACCCAAGGGCTTTCCCTCAGCCTTTCCTCTCAGCAGCCTGGTTTTGGGCTACTCCGAGCCGAACGAGATCCATCATCTCCATCTCAGCTCGCAGGCGAGGAGATTCGAGTCTCCGGCGGGTCATCCTCCATTTCCGGCAACACCAACGGCGGCGTTTCCGGTTTACACGGTGTGTTGCTTTGCTCAAAGTACTTGAAAGCGGCTCAAGAACTTCTCGACGAGGTCGTAAACGTCAGCACCGACGGAATCAAGAACGAGCCCACTAAAAAACCCACCGGGACAAAGATCACCGACGAGTCCTCCGGGACGGCAACCGACGACACTTCCGTCAGAATCGACCCAGCCGCGAAGGACAGTTCAGAGCTCACGACGGCTGAAAGACAGGAAATTCAGATGAAGAAAGCTAAACTTATAAGCATGCTTGATGAGGTGGAGCAAAGATACAGACAATATCATCATCAGATGCAGATAGTAATATCGTCGTTCGAGCAATCGACCGGAATTGGGTCGGCAAGAACGTACACTTCTCTGGCCCTCGAGACGATTTCGAAGCAATTCCGGTGTTTGAAAGACACGATTTCCGGCCAAATCAAGGCGGCAAACAAGAGTTTAGGGGAAGAAGATTGGGAGGGGGGTAAAATTGGAAGTTCAAGGCTGAAATTTGTGGATCATCAGCTTAGACAGCAGAGAGCTCTTCAACAATTGGGAATGATCCAGCAAAATGCTTGGAGACCCCAAAGAGGCCTCCCCGAGCGCTCTGTTTCGGTTCTTCGCGCTTGGCTTTTCGAACACTTTCTCCATCCTTATCCAAAGGATTCGGATAAGCAAATGCTGGCTAAGCAAACCGGGCTAACGAGGAGCCAGGTTTCGAATTGGTTTATAAATGCTCGAGTTCGGCTATGGAAGCCGATGGTGGAAGAAATGTACAAGGAGGAAACCAAGGACCAAGAACAGAATGGCTCTGCAGATAATAGGAGCATGATCAATGAAAATTCTCCTCCCAACTCCATTTCTCCAAGAGAAAAAGCTCCTCCAATCAAAATTCCGGAGAGTCATTCGACAAAGACAGTCTCTAAATCCGCCATTAGAGGAAATATTCAAAACTCATCTGGATCGAGGCTTCCCGGCTTGTCAAAGCTCGAAGATATTGCACAGGGATCGAGTCCAAAGAAACAAAAACACTCGGAAATGGCAATGCATTCTTCGCTGAATGTAATCTCGCCAATTGACATCGACGGGAAGCAAGCTCAGTCAAACCCGATGAACATTTCAACGAAAGTAGGCAATGAGAAGCAAAGCCGAGACGAATACTCATTCATGATGAACCAAGCTAATTTCGCAGGTGGATTCGGAGAATACCCGATCGAACGAATCGGCCGATACGATGACGACCAATTCACGCCTCGTTTTTCCACCAATGGTGTCTCGCTAACTCTCGGGCTCCCCCACCATAATTTTCTTCCAAACCAATCGATCCACGTCGGAAGACGGATAGAAATCGGCGAACCAAACGAGTTTTCTGGGATGAATTCTTCGACTCCTCATTCTACCACGGCTTTTGACAACATCGAAATTCAAAACAGAAAGCAATTTGTTGCACAATTGTTGCCGGATTTCGTGGTCTGA | 1992 | 49.05 | MGTYFQVNPDIQASDGLQTLVLMNPGYVQFSDPPPPTNLLFLNSLAGNSLASQNLHHAPPSQSPHFTGMPLPVSLPPTSQDPNSHPTHPHHISALHGFIPGAKFNHWNPINSSTDAREPQRATQGLSLSLSSQQPGFGLLRAERDPSSPSQLAGEEIRVSGGSSSISGNTNGGVSGLHGVLLCSKYLKAAQELLDEVVNVSTDGIKNEPTKKPTGTKITDESSGTATDDTSVRIDPAAKDSSELTTAERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQSTGIGSARTYTSLALETISKQFRCLKDTISGQIKAANKSLGEEDWEGGKIGSSRLKFVDHQLRQQRALQQLGMIQQNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYKEETKDQEQNGSADNRSMINENSPPNSISPREKAPPIKIPESHSTKTVSKSAIRGNIQNSSGSRLPGLSKLEDIAQGSSPKKQKHSEMAMHSSLNVISPIDIDGKQAQSNPMNISTKVGNEKQSRDEYSFMMNQANFAGGFGEYPIERIGRYDDDQFTPRFSTNGVSLTLGLPHHNFLPNQSIHVGRRIEIGEPNEFSGMNSSTPHSTTAFDNIEIQNRKQFVAQLLPDFVV | 663 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 55639780 | 55642259 | - | Bda018182.1 | Bda03g01628 | 4887 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g01628 | 663 | CDD | homeodomain | 365 | 426 | IPR001356 | GO:0003677 | |
Bda03g01628 | 663 | SUPERFAMILY | Homeodomain-like | 366 | 431 | IPR009057 | - | |
Bda03g01628 | 663 | MobiDBLite | consensus disorder prediction | 52 | 88 | - | - | |
Bda03g01628 | 663 | Pfam | Associated with HOX | 180 | 316 | IPR006563 | - | |
Bda03g01628 | 663 | MobiDBLite | consensus disorder prediction | 432 | 499 | - | - | |
Bda03g01628 | 663 | Gene3D | - | 368 | 446 | - | - | |
Bda03g01628 | 663 | ProSiteProfiles | 'Homeobox' domain profile. | 362 | 425 | IPR001356 | GO:0003677 | |
Bda03g01628 | 663 | MobiDBLite | consensus disorder prediction | 216 | 230 | - | - | |
Bda03g01628 | 663 | SMART | prehox3 | 175 | 317 | IPR006563 | - | |
Bda03g01628 | 663 | MobiDBLite | consensus disorder prediction | 442 | 459 | - | - | |
Bda03g01628 | 663 | Pfam | Homeobox KN domain | 382 | 421 | IPR008422 | GO:0003677|GO:0006355 | |
Bda03g01628 | 663 | MobiDBLite | consensus disorder prediction | 138 | 164 | - | - | |
Bda03g01628 | 663 | MobiDBLite | consensus disorder prediction | 473 | 497 | - | - | |
Bda03g01628 | 663 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 5 | 7 | 628 | - | - | |
Bda03g01628 | 663 | Coils | Coil | 249 | 269 | - | - | |
Bda03g01628 | 663 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 7 | 628 | - | - | |
Bda03g01628 | 663 | SMART | HOX_1 | 365 | 429 | IPR001356 | GO:0003677 | |
Bda03g01628 | 663 | MobiDBLite | consensus disorder prediction | 204 | 232 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda01g00423 | Bda03g01628 | CCT | |
Bda03g00660 | Bda03g01628 | CCT | |
Bda03g01628 | Bda05g01130 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g01628 | Bda-Chr3:55639780 | Bda04g00315 | Bda-Chr4:46953423 | 9.46E-86 | dispersed | |
Bda09g01453 | Bda-Chr9:46393445 | Bda03g01628 | Bda-Chr3:55639780 | 4.12E-64 | dispersed | |
Bda01g00423 | Bda-Chr1:30787966 | Bda03g01628 | Bda-Chr3:55639780 | 0 | wgd | |
Bda03g00660 | Bda-Chr3:5622800 | Bda03g01628 | Bda-Chr3:55639780 | 0 | wgd | |
Bda03g01628 | Bda-Chr3:55639780 | Bda05g01130 | Bda-Chr5:59513484 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15760 | PF07526 | POX | 4.10E-47 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g01628 | - | - | jre:108982860 | 757.673 |