Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01694 ATGAAAGTTGAATCTCCGTTTCAACCTCCGTTTGTGATTCTATGGAACAACGTACCAAGTATCAGGTTCTTTCTCTCTCTCTCTCTCTTGATTCGACCAAGTTGTTACAATGGAGTGTTGCTCAAGAGATTGAGTGTTTTTGTATTAGATTTAGCCTTCTTTCAGCTTTGCTATGACGTCCATGTTTTGGAGCTAGGATCGATTTTTTTTTCCCCCCCGTTTCAGATATCGTTGAGGGGGGCAAGTACCAAAGAAATTTCAAGGGATGCCCTACTTGAAAAGGTCATTCAGGAAAGAGAGCTCCGACACTATGCGAGAAGAGCTTCGGCTGCTGTTCTCTTTATTCAGAGAGTTTGGAGGCGCTATAAGGTGGTTTCGAAAGATAAAGTTTTACAGGAAATGTCTAAATTGGATCAACCAAGAGTTAGTTCTTATTCTGAACTTGCTCCATCTGTTGGGTGGGTTCTTGCAAACATTATCTCTCTGGTGACAGGCAGTGAAAATAACTCTATTGATCCTGGATGGTTCGAACAAGGTTTTGACTATGCGTTGTATGTCCTTGCAACATTAGCTTTGGCTGAGAACTTTTTAACTGTGCTTAGAGATGTTAGATGTTGTCAAAAGTTCAATCAGAATCAATATAATCTGGGTCTTCCTGAAACTTTATCAGACCTTTCTGCTGCAGTCGGACCTGAGAGTGAGACAGGACCCAAGTCTTCAACTCTGCCGTACCGTGATATGTTTAGGCCTGTTTTTCAACAGTCACATCTTTCCAATCTTTTGACACTTGTCCCTTTCACGTTGGAACAGCAAAGAAGGATTTCATCTATGCTCAATACATTAGTGTACAATGGCTTATCTCATGGTATCAGAAAGCAGAACAAACTCATTCTGGATTCTGCTGTCAAATGCATGCATCTCATGTACGAGAGGGATTGCAGACACCAGTTTTGTCCCAGTGATCTTTGGCTTTCGCCTCACTGTACCGGTGATGTCAAGGAATTGTCCCTGGATTTCACTGTTACTGAAGAATCATTTGGAAAATGGCGTGTTATAGATCTTATACATGGTGGCAAGAATATTCCTGTTACAAATGATAACAAGATGCAGTATGTTCATGCAATAGCAGATTATAAACTTAACCGACAGATACTTCCTTTTTCAAATGCATTTTACAGAGGATTAACTGATCTCGTATCACCATCTTGGTTGAAATTATTTAATGCAAATGAATTTAATCAGTTGCTTTCAGGTGGGAAATATGACATTGACGTGGAGGATTTGAGAAATAATACACGTTATACTGGTGGCTACACAGAAGGAAGCCGTACCATTAAAATTTTTTGGGAGGTTATTGAAGAATTTGAGCCAAAAGAACGTTGTATGCTTCTTAAATTTGTTACAAGTTGTTCTCAAGGTCCTTTGCTGGGGTTCAAACACTTGCAACCAACCTTTACTATCCATAAAATTACTTGTGATGTTCCTATCTGGGCCTCGATAGGAGGGCAGGACGTGGATCGGCTTCCATCAGCTTCCACGTGCTATAATACTCTAAAGCTACCAACCTACAAACGCCCAAGCACCTTGAGAGCCAAGCTTCTGTATGCAATCAATTCCAATTCAGGATTCGAGCTTTCTTGA 1641 40.52 MKVESPFQPPFVILWNNVPSIRFFLSLSLLIRPSCYNGVLLKRLSVFVLDLAFFQLCYDVHVLELGSIFFSPPFQISLRGASTKEISRDALLEKVIQERELRHYARRASAAVLFIQRVWRRYKVVSKDKVLQEMSKLDQPRVSSYSELAPSVGWVLANIISLVTGSENNSIDPGWFEQGFDYALYVLATLALAENFLTVLRDVRCCQKFNQNQYNLGLPETLSDLSAAVGPESETGPKSSTLPYRDMFRPVFQQSHLSNLLTLVPFTLEQQRRISSMLNTLVYNGLSHGIRKQNKLILDSAVKCMHLMYERDCRHQFCPSDLWLSPHCTGDVKELSLDFTVTEESFGKWRVIDLIHGGKNIPVTNDNKMQYVHAIADYKLNRQILPFSNAFYRGLTDLVSPSWLKLFNANEFNQLLSGGKYDIDVEDLRNNTRYTGGYTEGSRTIKIFWEVIEEFEPKERCMLLKFVTSCSQGPLLGFKHLQPTFTIHKITCDVPIWASIGGQDVDRLPSASTCYNTLKLPTYKRPSTLRAKLLYAINSNSGFELS 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 56367926 56376704 + Bda018255.1 Bda03g01694 4953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01694 546 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 327 546 IPR044611 GO:0000209|GO:0061630
Bda03g01694 546 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 255 327 IPR044611 GO:0000209|GO:0061630
Bda03g01694 546 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 75 127 IPR044611 GO:0000209|GO:0061630
Bda03g01694 546 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 327 546 - -
Bda03g01694 546 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 255 327 - -
Bda03g01694 546 Gene3D Hect, E3 ligase catalytic domain 421 545 - -
Bda03g01694 546 SMART hect_3 210 546 IPR000569 GO:0004842
Bda03g01694 546 SUPERFAMILY Hect, E3 ligase catalytic domain 329 539 IPR035983 GO:0004842
Bda03g01694 546 Pfam HECT-domain (ubiquitin-transferase) 274 546 IPR000569 GO:0004842
Bda03g01694 546 ProSiteProfiles HECT domain profile. 323 546 IPR000569 GO:0004842
Bda03g01694 546 Gene3D Hect, E3 ligase catalytic domain 315 383 - -
Bda03g01694 546 Gene3D Hect, E3 ligase catalytic domains 384 418 - -
Bda03g01694 546 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 75 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01694 Bda-Chr3:56367926 Bda08g00320 Bda-Chr8:3313677 3.13E-54 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01694 K10588 - qsu:111997152 397.512