Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g01696 | ATGGCGGTCTCTCCGACGGCGTCCACCAACTTGCTTTCGCTTTACGTTGGTGATCTTCATCCCGACGTCACGGAGGATATTCTTCGTGATGCTTTCTCCCAATTCGAGAGCCTCGCCTCGGTTCGTGTCTCCAGGGACTCTGCTACTGGCAGATCCCTCTGTTACGGTTACGTCAATTTCGTCGCTCATCAAGATGCAACCAACGCTATCCGGGAAAAGAATCACAGTATTTTGAATGGAAAAATGATGAGAGTCATGTGGTCGCATCGTGATTCCGATGCAAGGAAAAGTGGAATTGGCAATGTGTTTGTCAAGAACTTGAGTGATTCGGTCAGTAATATGGAGCTTGAAGAAATGTTTGGTCGTTTTGGAAATATTGTCTCCTGCAAAGTTCCCATGACTGAGGATGGGAAGAGCAGATGTCACGGCTTTGTACAGTTTGAGTCAGAAAATTCTGCAACTGCTGCTATTGAGAAGTTAAATGGCTTAAATATAGATGGGAAGCAAATCTATGTTGGAAAGTTCATCAAGAAAATCGACCGAGTTATGGCTACTAGCACTGATACTAAATTTACAAATTTGTATGTGAAGAATTTGGATCCAGAAATTGGGGAGATGCTTTTGCATACAAAGTTTTCGAAGTTTGGAAAAATTGCTAGCTTGGTTATTGCAAAGGATGACAATGGAATATCTAAAGGTTTTGGGTTTATAAACTTTGATAACTCTGATGATGCTAAGCGTGCAATGGAAGTGATGAACGGATCACAAGTTGGTTCAAAGGTTCTCTATGTAGCAAGGGCACAGAAGAAGACAGAGCGCCAACAAATGTTACGCAGGCAGTTTGAAGAAAAGTGCAAGGACGAACACAAGGGCTTAAATGTGTATGTAAAGAATATCGACGATGATGTCACGACTGAAGATCTCGCAAGAAATTTCAGTCAGTGTGGCACAATTACTTCCGCAAAAATTATGCAGAATGACAAAGGAATAAGCAAAGGGTTTGGATTTGTTTGCTTCTCTTGTCAGGAGGAGGCAAATAAAGCAGTGAACACCTTTCATGGACATATGTTTCAAAACAAGCCGTTGTATGTGGCTATTGCTCAAAGAAAAGAGGAAAGACAAACTCAACTGCAACGTCATTTTGCTCAGCGTATAGCTGGACTAGTTCCTGGCGGATATCCTTCCTACTACACATCTCCTCTTGGTGCTCTTCCAGCTCCACCTACGCCACAGAGACCAGGCCTGATGTATCAATCTTTACGGTTAAGGCCAGGATGGAGGTCCAATATTCCTAGACAAGGTGTGCACAACAGGGTAAGGTCGAATGGCCAAATGGTTTCTCAAAATAACGCTCACGCTGGTTCGTATAAACAAAATTTCCAGCAACAAAATCAATCTGTGATTCCTTCCAACGATTCAGGCTTTAATCAGGTTCCTTTACTACAGGATGGACAATCTCATTATACCCGTTCCAAAACAGCTGGAGCTGGATCAGAGGACTCAGTGGTACTGAGCTGTAAGCTTGCTGCTGCTTCTCCTGATCAACAGAAACAAATACTTGGGGATCTTCTCTATCCACTAGTTGAAAATTATAAGCCGGATCTTGCTGCAAAAATTACAGGAATGCTTCTGGAGATGAACATTGTGGAATTGCTACACTTATTGGAGTCACCTGAGGCGCTGGCTGCCAAAGTAGATGAAGCAATCCAAGTTCTGAAGATGTCAAAGACCAAAGTATCGAGCCAAGACTCAGTTCACAACTCCACTTTTCTATCTACTGAGGTTGCTGTCAATTGA | 1797 | 42.85 | MAVSPTASTNLLSLYVGDLHPDVTEDILRDAFSQFESLASVRVSRDSATGRSLCYGYVNFVAHQDATNAIREKNHSILNGKMMRVMWSHRDSDARKSGIGNVFVKNLSDSVSNMELEEMFGRFGNIVSCKVPMTEDGKSRCHGFVQFESENSATAAIEKLNGLNIDGKQIYVGKFIKKIDRVMATSTDTKFTNLYVKNLDPEIGEMLLHTKFSKFGKIASLVIAKDDNGISKGFGFINFDNSDDAKRAMEVMNGSQVGSKVLYVARAQKKTERQQMLRRQFEEKCKDEHKGLNVYVKNIDDDVTTEDLARNFSQCGTITSAKIMQNDKGISKGFGFVCFSCQEEANKAVNTFHGHMFQNKPLYVAIAQRKEERQTQLQRHFAQRIAGLVPGGYPSYYTSPLGALPAPPTPQRPGLMYQSLRLRPGWRSNIPRQGVHNRVRSNGQMVSQNNAHAGSYKQNFQQQNQSVIPSNDSGFNQVPLLQDGQSHYTRSKTAGAGSEDSVVLSCKLAAASPDQQKQILGDLLYPLVENYKPDLAAKITGMLLEMNIVELLHLLESPEALAAKVDEAIQVLKMSKTKVSSQDSVHNSTFLSTEVAVN | 598 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 56394646 | 56398450 | - | Bda018257.1 | Bda03g01696 | 4955 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g01696 | 598 | Gene3D | - | 500 | 594 | - | - | |
Bda03g01696 | 598 | SMART | rrm2_1 | 101 | 173 | IPR003954 | GO:0003676 | |
Bda03g01696 | 598 | SMART | rrm2_1 | 293 | 365 | IPR003954 | GO:0003676 | |
Bda03g01696 | 598 | SMART | rrm2_1 | 193 | 265 | IPR003954 | GO:0003676 | |
Bda03g01696 | 598 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 100 | 177 | IPR000504 | GO:0003723 | |
Bda03g01696 | 598 | SMART | poly_2 | 512 | 575 | IPR002004 | GO:0003723 | |
Bda03g01696 | 598 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 13 | 385 | IPR006515 | GO:0003723 | |
Bda03g01696 | 598 | Gene3D | - | 187 | 274 | IPR012677 | - | |
Bda03g01696 | 598 | CDD | RRM1_I_PABPs | 13 | 91 | - | - | |
Bda03g01696 | 598 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 294 | 362 | IPR000504 | GO:0003723 | |
Bda03g01696 | 598 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 194 | 262 | IPR000504 | GO:0003723 | |
Bda03g01696 | 598 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 102 | 170 | IPR000504 | GO:0003723 | |
Bda03g01696 | 598 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 14 | 82 | IPR000504 | GO:0003723 | |
Bda03g01696 | 598 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 292 | 369 | IPR000504 | GO:0003723 | |
Bda03g01696 | 598 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 500 | 577 | IPR002004 | GO:0003723 | |
Bda03g01696 | 598 | SUPERFAMILY | RNA-binding domain, RBD | 187 | 280 | IPR035979 | GO:0003676 | |
Bda03g01696 | 598 | Gene3D | - | 275 | 383 | IPR012677 | - | |
Bda03g01696 | 598 | SUPERFAMILY | PABC (PABP) domain | 457 | 587 | IPR036053 | GO:0003723 | |
Bda03g01696 | 598 | CDD | RRM2_I_PABPs | 98 | 174 | IPR045305 | - | |
Bda03g01696 | 598 | PANTHER | POLYADENYLATE-BINDING PROTEIN 7 | 7 | 578 | - | - | |
Bda03g01696 | 598 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 192 | 269 | IPR000504 | GO:0003723 | |
Bda03g01696 | 598 | Pfam | Poly-adenylate binding protein, unique domain | 508 | 572 | IPR002004 | GO:0003723 | |
Bda03g01696 | 598 | SUPERFAMILY | RNA-binding domain, RBD | 13 | 176 | IPR035979 | GO:0003676 | |
Bda03g01696 | 598 | PANTHER | RNA BINDING PROTEIN | 7 | 578 | - | - | |
Bda03g01696 | 598 | SUPERFAMILY | RNA-binding domain, RBD | 290 | 395 | IPR035979 | GO:0003676 | |
Bda03g01696 | 598 | SMART | rrm1_1 | 293 | 365 | IPR000504 | GO:0003723 | |
Bda03g01696 | 598 | SMART | rrm1_1 | 101 | 173 | IPR000504 | GO:0003723 | |
Bda03g01696 | 598 | SMART | rrm1_1 | 193 | 265 | IPR000504 | GO:0003723 | |
Bda03g01696 | 598 | SMART | rrm1_1 | 13 | 86 | IPR000504 | GO:0003723 | |
Bda03g01696 | 598 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 12 | 90 | IPR000504 | GO:0003723 | |
Bda03g01696 | 598 | Gene3D | - | 4 | 100 | IPR012677 | - | |
Bda03g01696 | 598 | Gene3D | - | 101 | 186 | IPR012677 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda03g01696 | Bda05g01200 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g01696 | Bda-Chr3:56394646 | Bda11g00858 | Bda-Chr11:8470077 | 1.10E-150 | dispersed | |
Bda03g01696 | Bda-Chr3:56394646 | Bda05g01200 | Bda-Chr5:59998272 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g01696 | K13126 | - | vvi:100267544 | 723.391 |