Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01696 ATGGCGGTCTCTCCGACGGCGTCCACCAACTTGCTTTCGCTTTACGTTGGTGATCTTCATCCCGACGTCACGGAGGATATTCTTCGTGATGCTTTCTCCCAATTCGAGAGCCTCGCCTCGGTTCGTGTCTCCAGGGACTCTGCTACTGGCAGATCCCTCTGTTACGGTTACGTCAATTTCGTCGCTCATCAAGATGCAACCAACGCTATCCGGGAAAAGAATCACAGTATTTTGAATGGAAAAATGATGAGAGTCATGTGGTCGCATCGTGATTCCGATGCAAGGAAAAGTGGAATTGGCAATGTGTTTGTCAAGAACTTGAGTGATTCGGTCAGTAATATGGAGCTTGAAGAAATGTTTGGTCGTTTTGGAAATATTGTCTCCTGCAAAGTTCCCATGACTGAGGATGGGAAGAGCAGATGTCACGGCTTTGTACAGTTTGAGTCAGAAAATTCTGCAACTGCTGCTATTGAGAAGTTAAATGGCTTAAATATAGATGGGAAGCAAATCTATGTTGGAAAGTTCATCAAGAAAATCGACCGAGTTATGGCTACTAGCACTGATACTAAATTTACAAATTTGTATGTGAAGAATTTGGATCCAGAAATTGGGGAGATGCTTTTGCATACAAAGTTTTCGAAGTTTGGAAAAATTGCTAGCTTGGTTATTGCAAAGGATGACAATGGAATATCTAAAGGTTTTGGGTTTATAAACTTTGATAACTCTGATGATGCTAAGCGTGCAATGGAAGTGATGAACGGATCACAAGTTGGTTCAAAGGTTCTCTATGTAGCAAGGGCACAGAAGAAGACAGAGCGCCAACAAATGTTACGCAGGCAGTTTGAAGAAAAGTGCAAGGACGAACACAAGGGCTTAAATGTGTATGTAAAGAATATCGACGATGATGTCACGACTGAAGATCTCGCAAGAAATTTCAGTCAGTGTGGCACAATTACTTCCGCAAAAATTATGCAGAATGACAAAGGAATAAGCAAAGGGTTTGGATTTGTTTGCTTCTCTTGTCAGGAGGAGGCAAATAAAGCAGTGAACACCTTTCATGGACATATGTTTCAAAACAAGCCGTTGTATGTGGCTATTGCTCAAAGAAAAGAGGAAAGACAAACTCAACTGCAACGTCATTTTGCTCAGCGTATAGCTGGACTAGTTCCTGGCGGATATCCTTCCTACTACACATCTCCTCTTGGTGCTCTTCCAGCTCCACCTACGCCACAGAGACCAGGCCTGATGTATCAATCTTTACGGTTAAGGCCAGGATGGAGGTCCAATATTCCTAGACAAGGTGTGCACAACAGGGTAAGGTCGAATGGCCAAATGGTTTCTCAAAATAACGCTCACGCTGGTTCGTATAAACAAAATTTCCAGCAACAAAATCAATCTGTGATTCCTTCCAACGATTCAGGCTTTAATCAGGTTCCTTTACTACAGGATGGACAATCTCATTATACCCGTTCCAAAACAGCTGGAGCTGGATCAGAGGACTCAGTGGTACTGAGCTGTAAGCTTGCTGCTGCTTCTCCTGATCAACAGAAACAAATACTTGGGGATCTTCTCTATCCACTAGTTGAAAATTATAAGCCGGATCTTGCTGCAAAAATTACAGGAATGCTTCTGGAGATGAACATTGTGGAATTGCTACACTTATTGGAGTCACCTGAGGCGCTGGCTGCCAAAGTAGATGAAGCAATCCAAGTTCTGAAGATGTCAAAGACCAAAGTATCGAGCCAAGACTCAGTTCACAACTCCACTTTTCTATCTACTGAGGTTGCTGTCAATTGA 1797 42.85 MAVSPTASTNLLSLYVGDLHPDVTEDILRDAFSQFESLASVRVSRDSATGRSLCYGYVNFVAHQDATNAIREKNHSILNGKMMRVMWSHRDSDARKSGIGNVFVKNLSDSVSNMELEEMFGRFGNIVSCKVPMTEDGKSRCHGFVQFESENSATAAIEKLNGLNIDGKQIYVGKFIKKIDRVMATSTDTKFTNLYVKNLDPEIGEMLLHTKFSKFGKIASLVIAKDDNGISKGFGFINFDNSDDAKRAMEVMNGSQVGSKVLYVARAQKKTERQQMLRRQFEEKCKDEHKGLNVYVKNIDDDVTTEDLARNFSQCGTITSAKIMQNDKGISKGFGFVCFSCQEEANKAVNTFHGHMFQNKPLYVAIAQRKEERQTQLQRHFAQRIAGLVPGGYPSYYTSPLGALPAPPTPQRPGLMYQSLRLRPGWRSNIPRQGVHNRVRSNGQMVSQNNAHAGSYKQNFQQQNQSVIPSNDSGFNQVPLLQDGQSHYTRSKTAGAGSEDSVVLSCKLAAASPDQQKQILGDLLYPLVENYKPDLAAKITGMLLEMNIVELLHLLESPEALAAKVDEAIQVLKMSKTKVSSQDSVHNSTFLSTEVAVN 598
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 56394646 56398450 - Bda018257.1 Bda03g01696 4955
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01696 598 Gene3D - 500 594 - -
Bda03g01696 598 SMART rrm2_1 101 173 IPR003954 GO:0003676
Bda03g01696 598 SMART rrm2_1 293 365 IPR003954 GO:0003676
Bda03g01696 598 SMART rrm2_1 193 265 IPR003954 GO:0003676
Bda03g01696 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Bda03g01696 598 SMART poly_2 512 575 IPR002004 GO:0003723
Bda03g01696 598 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 13 385 IPR006515 GO:0003723
Bda03g01696 598 Gene3D - 187 274 IPR012677 -
Bda03g01696 598 CDD RRM1_I_PABPs 13 91 - -
Bda03g01696 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 362 IPR000504 GO:0003723
Bda03g01696 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Bda03g01696 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Bda03g01696 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 82 IPR000504 GO:0003723
Bda03g01696 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 369 IPR000504 GO:0003723
Bda03g01696 598 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 500 577 IPR002004 GO:0003723
Bda03g01696 598 SUPERFAMILY RNA-binding domain, RBD 187 280 IPR035979 GO:0003676
Bda03g01696 598 Gene3D - 275 383 IPR012677 -
Bda03g01696 598 SUPERFAMILY PABC (PABP) domain 457 587 IPR036053 GO:0003723
Bda03g01696 598 CDD RRM2_I_PABPs 98 174 IPR045305 -
Bda03g01696 598 PANTHER POLYADENYLATE-BINDING PROTEIN 7 7 578 - -
Bda03g01696 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Bda03g01696 598 Pfam Poly-adenylate binding protein, unique domain 508 572 IPR002004 GO:0003723
Bda03g01696 598 SUPERFAMILY RNA-binding domain, RBD 13 176 IPR035979 GO:0003676
Bda03g01696 598 PANTHER RNA BINDING PROTEIN 7 578 - -
Bda03g01696 598 SUPERFAMILY RNA-binding domain, RBD 290 395 IPR035979 GO:0003676
Bda03g01696 598 SMART rrm1_1 293 365 IPR000504 GO:0003723
Bda03g01696 598 SMART rrm1_1 101 173 IPR000504 GO:0003723
Bda03g01696 598 SMART rrm1_1 193 265 IPR000504 GO:0003723
Bda03g01696 598 SMART rrm1_1 13 86 IPR000504 GO:0003723
Bda03g01696 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Bda03g01696 598 Gene3D - 4 100 IPR012677 -
Bda03g01696 598 Gene3D - 101 186 IPR012677 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Bda03g01696 Bda05g01200 BCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01696 Bda-Chr3:56394646 Bda11g00858 Bda-Chr11:8470077 1.10E-150 dispersed
Bda03g01696 Bda-Chr3:56394646 Bda05g01200 Bda-Chr5:59998272 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01696 K13126 - vvi:100267544 723.391