Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01712 ATGACAGGGCATTTAGGCCAATCCATTCCAAGCATGACTGCATTTGCCAAAGGAAAAGTTGCAGCTGCTAAAATTCTTCGCATAATCGATCACAAACCAGCAGTAGATCGAAACAGCGAATCTGGTTTGGAATTAGAATCTGTAACAGGACTAGTCGAGCTTAAAAACGTAGATTTCTCGTATCCGTCAAGACCAGACGTACGAATACTTAACGACTTCTCCCTCAACGTTCCGGCCGGCAAGACCATAGCTTTGGTCGGTAGCAGCGGTTCAGGGAAGAGCACTGTAGTCTCACTTATTGAAAGATTTTACGACCCGATTTCAGGATGCGTTCTTCTCGACGGGCACGATATAAAGACGTTAAAGCTTAGATGGCTGAGGCAGCAAATAGGGTTGGTCAGTCAAGAGCCGGCTCTGTTTGCGACAACCATTAAAGAGAATATACTCTTGGGAAGGCCCGAGGCCAACCAGCTTGAGGTAGAAGAAGCTGCAAGAGTTGCTAATGCCCATTCTTTCATCATCAAACTTCCTGATGGCTATGATACTCAGGTGGGGGAGAGAGGCTTGCAGCTTTCCGGAGGGCAGAAGCAGAGAATCGCTATAGCCCGGGCGATGCTGAAAAACCCTGCTATCTTGCTCTTAGACGAGGCGACCAGTGCCCTTGACTCCGAATCAGAAAAGCTCGTTCAAGAGGCCCTCGATCGGTTCATGATCGGGAGGACAAGTCTCGTGATTGCCCATCGCCTCTCGACCATTCGCAAAGCCGATCTCGTTGCCGTTCTCCAACAAGGAAGCGTCTCTGAAATCGGGACCCACGATGAACTCATCGTTAGAGGAGAAAACAGCATCTACGCCAAACTCATCCGAATGCAGGAGATGGCCCACGAAACCGCGCTCAACAATGCTCGAAAAAGTAGTGCAAGACCTTCCAGTGCTAGAAACTCAGTGAGTTCACCTATAATTGCACGAAATTCGTCATACGGGCGATCGCCTTATTCACGTCGACTATCGGACTTCTCCACTTCCGATTTTAGTCTCTCCCTTGACATCTCTCACCCAAGCTATCGGGTCGAAAAGCTTGCCTTCAAGGAGCAAGCCAGCTCCTTCTGGCGCCTAGCGAAAATGAATTCTCCTGAATGGGTTTACGCATTGCTCGGTTCGATCGGCTCCGTCGTTTGTGGGTTTTTAAGCGCCTTCTTTGCATATGTTCTGAGTGCTGTTCTAAGTGTCTACTACAATCCTAGCCATTCTTACATGAGTAGAGAAATAGAGAAGTACTGCTATTTACTGATTGGGCTCTCTTCAGCAGCTCTGCTCTTCAACACACAGCAGCATTTCTTCTGGGATATTGTCGGAGAAAATCTCACTACTCGAGTGAGGGAGAAAATGCTCGGGGCTCTGCTAAAAAATGAAATGGCCTGGTTCGATCAGGAGGAAAATGAGAGTGCTAGAATTGCAGCTAGGTTGGCTCTAGATGCGAACAATGTCAGGTCCGCCATTGGAGATCGGATTTCTGTGATTGTTCAGAACACAGCTCTCATGTTAGTTGCCTGCACTGCTGGATTTGTGCTGCAATGGCGTCTGGCTCTCGTCCTCGTGGCTGTCTTCCCTGTAGTTGTTGCAGCCACCGTTTTGCAGAAAATGTTTATGACTGGTTTTTCTGGAGATCTTGAAGCATCTCATGCAAAGGCGACTCAATTGGCGGGAGAGGCGATAGCCAACGTAAGGACAGTGGCAGCCTTCAATTCCGAGGGGAAAATCGTCGGTCTTTTCTCTTCAAACCTTGAGATTCCTCTAAAACGCTGCTTTTGGAAAGGACAGATTGCCGGAAGTGGATTCGGCGTAGCCCAGTTTTTGCTCTATGCTTCGTATGCTCTTGGTCTTTGGTATGCTTCTTGGCTCGTAAAGCATGGAATATCGGATTTCTCGAACACAATCCGGGTTTTTATGGTCCTCATGGTCTCAGCCAACGGTGCAGCCGAAACACTTACCTTAGCTCCGGACTTCATCAAGGGCGGTCGAGCCATGCACTCGGTCTTTGACCTTCTCGACCGAAAAACCGAGATTGAACCCGACGATCTAAATGCCACACCAGTCCAAGACCGATTACGAGGCGAAGTCGAATTCAAACATGTCGACTTTTCATACCCTAGTCGATCTGACATCCCAATTTTCCGCGACCTCACTCTCCGGGCTCGTTCGGGCAAGACTCTTGCCCTAGTTGGGCCAAGCGGGTGCGGTAAAAGCTCGGTAATTGCACTAATCCAGAGGTTCTACGAGCCGACATCGGGACGAGTCATGATCGATGGGAAAGATATCAGAAAATACAATCTCAAGTCCCTCAGACAGCACATTGCAATAGTTCCTCAGGAGCCATGCCTGTTCGGTTCAACCATCTACGAAAACATTGCTTATGGCCGGGAATCAGCCACCGAAACAGAGATAATTGAAGCAGCAACACTGGCCAACGCCCATAAGTTCATATCGGCATTGCCTGATGGATACAAAACATTTGTAGGGGAAAGAGGTATACAACTATCAGGTGGGCAGAAACAGAGGATCGCCATTGCTAGAGCTCTGGTCAGGAAGGCAGAGCTGATGCTACTTGACGAAGCAACCAGTTCATTAGATGCCGAATCTGAGCGATCAGTCCAGGAAGCTCTCGACCGGGCATGTTCAGGAAAAACAACCATAGTCGTGGCTCATCGACTTTCGACTATCAGAAATGCTCATGTTATTGCTGTGATCGATGAAGGAAAAGTGGCCGAGCAGGGGTCGCATTCGCATCTTTTGAAAAATTATCCGGATGGGTGTTACGCTCGGATGATTCAGCTACAAAGATTTACACATAACCAAGTCATCGGGATTGCTTCGGGCTCGACATCCTCGGCCAAACCCAGTCGGGAGGAAGACGATAAAGAGAGTTAG 2928 48.63 MTGHLGQSIPSMTAFAKGKVAAAKILRIIDHKPAVDRNSESGLELESVTGLVELKNVDFSYPSRPDVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGCVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPEANQLEVEEAARVANAHSFIIKLPDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTSLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELIVRGENSIYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDISHPSYRVEKLAFKEQASSFWRLAKMNSPEWVYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPSHSYMSREIEKYCYLLIGLSSAALLFNTQQHFFWDIVGENLTTRVREKMLGALLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEASHAKATQLAGEAIANVRTVAAFNSEGKIVGLFSSNLEIPLKRCFWKGQIAGSGFGVAQFLLYASYALGLWYASWLVKHGISDFSNTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMHSVFDLLDRKTEIEPDDLNATPVQDRLRGEVEFKHVDFSYPSRSDIPIFRDLTLRARSGKTLALVGPSGCGKSSVIALIQRFYEPTSGRVMIDGKDIRKYNLKSLRQHIAIVPQEPCLFGSTIYENIAYGRESATETEIIEAATLANAHKFISALPDGYKTFVGERGIQLSGGQKQRIAIARALVRKAELMLLDEATSSLDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDEGKVAEQGSHSHLLKNYPDGCYARMIQLQRFTHNQVIGIASGSTSSAKPSREEDDKES 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 56582263 56585950 - Bda018273.2 Bda03g01712 4971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01712 975 Pfam ABC transporter 726 874 IPR003439 GO:0005524
Bda03g01712 975 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 52 288 IPR003439 GO:0005524
Bda03g01712 975 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 384 671 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bda03g01712 975 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 4 950 - -
Bda03g01712 975 CDD ABC_6TM_Pgp_ABCB1_D2_like 373 689 - -
Bda03g01712 975 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 707 943 IPR003439 GO:0005524
Bda03g01712 975 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 4 950 IPR039421 -
Bda03g01712 975 Gene3D ABC transporter type 1, transmembrane domain 4 304 IPR036640 GO:0005524|GO:0016021
Bda03g01712 975 Pfam ABC transporter 70 219 IPR003439 GO:0005524
Bda03g01712 975 ProSitePatterns ABC transporters family signature. 191 205 IPR017871 GO:0005524
Bda03g01712 975 Gene3D - 42 292 IPR027417 -
Bda03g01712 975 Gene3D - 696 947 IPR027417 -
Bda03g01712 975 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 946 IPR027417 -
Bda03g01712 975 Gene3D ABC transporter type 1, transmembrane domain 363 672 IPR036640 GO:0005524|GO:0016021
Bda03g01712 975 CDD ABC_MTABC3_MDL1_MDL2 707 946 - -
Bda03g01712 975 Pfam ABC transporter transmembrane region 386 654 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bda03g01712 975 SUPERFAMILY ABC transporter transmembrane region 371 691 IPR036640 GO:0005524|GO:0016021
Bda03g01712 975 CDD ABC_MTABC3_MDL1_MDL2 52 291 - -
Bda03g01712 975 SMART AAA_5 79 265 IPR003593 -
Bda03g01712 975 SMART AAA_5 734 926 IPR003593 -
Bda03g01712 975 ProSitePatterns ABC transporters family signature. 846 860 IPR017871 GO:0005524
Bda03g01712 975 Gene3D ABC transporter type 1, transmembrane domain 673 950 IPR036640 GO:0005524|GO:0016021
Bda03g01712 975 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 291 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01712 Bda-Chr3:56582263 Bda07g00087 Bda-Chr7:1110010 3.54E-118 dispersed
Bda10g00635 Bda-Chr10:40398557 Bda03g01712 Bda-Chr3:56582263 1.03E-10 dispersed
Bda11g01214 Bda-Chr11:12508008 Bda03g01712 Bda-Chr3:56582263 7.99E-09 dispersed
Bda11g01383 Bda-Chr11:17210358 Bda03g01712 Bda-Chr3:56582263 2.68E-19 dispersed
Bda13g01684 Bda-Chr13:40215016 Bda03g01712 Bda-Chr3:56582263 2.66E-30 dispersed
Bda14g00483 Bda-Chr14:3463198 Bda03g01712 Bda-Chr3:56582263 1.56E-06 dispersed
Bda03g01712 Bda-Chr3:56582263 Bda07g01146 Bda-Chr7:13594330 2.32E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01712 K05658 - tcc:18598024 1675.22