Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01725 ATGATACCCAGTAATGTTTTTTCTGTACCCACTCCCATAGGAGCCTTCTCCCAAGAACACCTCTCAAACCCTAATCCCAAACCTAATGCCCACCCAGTCGTTAGGAAGAAGAGGAATCTTCCAGGTACACCAGATCCAGATGCTGAGGTTATTGCTTTATCTCCCAAGAGCCTCATGGCGACAAACAGATTCATCTGCGAAATATGCAACAAAGGGTTTCAAAGAGACCAAAATTTGCAGCTTCACAGAAGAGGTCACAACCTCCCATGGAAGCTCCGGCAGAGGACGAACAAAGAAGTGCGAAAGAAGGTATACATTTGCCCGGAGAAATCTTGCGTCCACCATGACCCGTCTCGAGCTCTGGGCGACCTCACCGGAATAAAAAAGCATTTCAGCAGAAAACACGGCGAGAAGAAGTGGAAGTGTGAGAAGTGTGCTAAGAAATACGCCGTTCAATCTGACTGGAAAGCTCACTCTAAAACCTGCGGAACAAGAGAGTACAAATGCGACTGCGGAACTCTCTTCTCCAGGAAAGATAGTTTCATCACCCACAGGGCGTTTTGCGATGCATTAGCTGAAGAAAGTACGAGATTTTCTTCGGTTTCAGCCTCAAATCTAAGTTTCAGAAATGAAACAGTAGATGAAACTCTGATCGATTCTCAACCCAGTTTGAATCACGGGTTTTCTAGTCATCAAGGAGTTCAAGATGTTTCTGGAATTTCCCAATTCGGATCTGATTTTCTCCGAGATTTCAACGAAATGGCTTCGGCAAATTCCCTCGGTTCAGATCAGAACAAGACCAGATTGTCACTTTGGATGAATCAAGCCAACGCTCAGCTTAATCCAATGGAAGCAGCCGCAAACGCTAATCTTTTCGGATCATCTTCGTCGTCGGCTTTTCCGGAGATGGTGCAGATGCCGCCGTCGAATCTTTTTGGCGGTCTGCCTCCTTCAAATTTCGGAATGTCTAATCAATATCTGGGCTTGAACGAAAATGCAAATCTTTCTGCAGATTCTAAAAACCCAAGTCTTTCTCTATCTCAAGTCGGAGAATCAAAAGAAGAAGGCGTGAACAAAGGAAATATGGTGGAATCTTTGTCTTTTTATTCAGATTCTCGAACTCAGAACAAACAATCAAAACCAGCTTCGCCAATGTCAGCAACTGCACTTTTGCAGAAAGCAGCTCAAATGGGTTCTACAAGAAGCAACCCGTCAATCATTCCGAACTGCAGCTTCGGAGTAATGAGTTCATCGTCTACATCAAGTCTCAATCCAATTACAAAACCCGTCTTTCAAAGTACCAAACAGCCGGAGAGCTTCGCAGCTATGGCGAACTGCAACGGTTTAGATCAGATTATGATGCAAACGAGCGGAGTAATCGGAAATGGCTTCACCAGGGACTTTCTCGGAGTGGGAGTTAAAGAAGGTCATCATCGGCCATTCTCAGCCCGCGAGCTAGCCAAGTTATCCGCCATGAGCTCCGCCTCCTCCGCCGGTTTGAGCCATTTTAGCGTCAATCGGTGA 1524 45.73 MIPSNVFSVPTPIGAFSQEHLSNPNPKPNAHPVVRKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCAKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRFSSVSASNLSFRNETVDETLIDSQPSLNHGFSSHQGVQDVSGISQFGSDFLRDFNEMASANSLGSDQNKTRLSLWMNQANAQLNPMEAAANANLFGSSSSSAFPEMVQMPPSNLFGGLPPSNFGMSNQYLGLNENANLSADSKNPSLSLSQVGESKEEGVNKGNMVESLSFYSDSRTQNKQSKPASPMSATALLQKAAQMGSTRSNPSIIPNCSFGVMSSSSTSSLNPITKPVFQSTKQPESFAAMANCNGLDQIMMQTSGVIGNGFTRDFLGVGVKEGHHRPFSARELAKLSAMSSASSAGLSHFSVNR 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 56717283 56719269 - Bda018287.1 Bda03g01725 4984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01725 507 Gene3D Classic Zinc Finger 116 197 - -
Bda03g01725 507 MobiDBLite consensus disorder prediction 338 357 - -
Bda03g01725 507 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Bda03g01725 507 Gene3D Classic Zinc Finger 43 115 - -
Bda03g01725 507 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Bda03g01725 507 MobiDBLite consensus disorder prediction 17 47 - -
Bda03g01725 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Bda03g01725 507 PANTHER ZINC FINGER PROTEIN JACKDAW 5 493 IPR033243 GO:0003700
Bda03g01725 507 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Bda03g01725 507 SMART c2h2final6 64 86 IPR013087 -
Bda03g01725 507 SMART c2h2final6 140 160 IPR013087 -
Bda03g01725 507 SMART c2h2final6 105 135 IPR013087 -
Bda03g01725 507 MobiDBLite consensus disorder prediction 338 354 - -
Bda03g01725 507 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 493 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01725 Bda-Chr3:56717283 Bda09g00187 Bda-Chr9:2692583 6.97E-121 dispersed
Bda03g01725 Bda-Chr3:56717283 Bda04g00061 Bda-Chr4:1006327 1.22E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15769 PF12171 zf-C2H2_jaz 7.40E-05 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01725 K25870 - jre:109011168 602.438