Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda03g01739 | ATGGTCAATTTCTGCTGGAAAGCTCGTGTCGACGACCAAGGAACTCGTTTTCACGATGATTCGAGTAAGGAAATTGATGGGTTGCTATGGTCTAAGGATTTGGGGCTCCATGACCATGGTCAATTTTCGATGGCAGTGATTCAGGCGAACTCAACGTTGGAGGATCAAAGCCAACTCGAATCAGGACCGTTGAACTTGAGTCCTTCCGATCCACGTGCAACTTTTGTCGGAGTATACGACGGCCACGGTGCAGCAGAGGCATCGCGTTTCGTCAACGATCATCTTGTCTGCAACATCAAGAGTATTTCTTTGCTAGAGAGAGAGAGAGACTACCTTAAAACTTGTTGGGTGTTCCTTAAAAGCTGTGCAATTTCAGGATTTGCATCTACTCATCGAGGGATATCCGAAGATGTCATTAGACAGGCTTTTGCAGCAACAGAAGAAGCTTTTCTCTCCCTCGTTGGGAAAACATGGCTTGTCAAGCCAGAGATGGCCTCGTCCGGTTCGTGTTGTCTGGTAGGACTAATCGCCAACGGCTATCTACATATTGCAAACCTGGGAGATTCCCGAGTTGTATTAGGCAGAGCTGAGAAAGGATCTAAAGACATCAAGGCTATTCAGCTATCCACAGATCACAATGCAAGTTTTGAGTCGGTGAGAAAGGAACTACGAGAGGCTCATCCACAAGATCCCAACATTGTTCAGCTTAAACACAGAGTTTGGCGCGTCAAAGGCCTGATCAAACAGGTCTCTCGTTCCATTGGAGATGCATATCTGAAGAAGTCAGAGTTCAATAGAGCGCCGCTGTTGCCGAAGTTTAGACTGAACAAACCATTTCACAAGCCAATTCTTAGCTCTGAACCATCAATTTCAGCTCACAAAATCCGTCCGGAAGATCAGTTTCTTATATTTGCTTCTGATGGTTTATGGGACCATCTTAGCAATCAGAGAGCAGTAGACATTGTTTGTAGTTACCCACGTAACGAGGAGGAAGACGAAAGGTCAGACAAATGGAAGAATTTCCTCGATCAAGCAGTGGAATCATCTCAACAGTGTCATAATGAAACGGAAGTTCAAGAAAAGTTGAAGTCTGAAGTTAGTGCGCAGCAAGCAGATGATTTTTCTGAGATATATGAGGAACTCGTAGGTGATGATTCAAGTGAGAAGAAGTCTGTTTCTGATGATGAGAAGAAATCCGTTTCTGATGAGTCAACAAAAAGTGATCCTGAAAAGAAGTTTCAATTTTCAAAAGAAACAAAAGCATGCAAGTTCGAGACATGGACTCATATTAGACCATCTCTTGGTGTGATAGAAAATATGATGGCTTCACGTGTGAAGAAAAGAAAAATAATTAAAGATGAGCTCAAAGCTAGTGCAGATCATCTTCCTCCTCTAGACGAGGGAAGATCTACGTTGGATGCTTCTGATGAAGAGTTTGAAGTTCAGGATCCTACCACTGGATTGTCATTTTACAATGTGGATGCTTCTGGAGCAGAAAGTGATGCAAGTGATGTTGCATTTAAGAATAAGAATGTATCCGCCATGGAAAATGTCACTTATGATGGTGACTCGCAAGATGTTTTTTTCCCTTGGAAGGAGGAACTGAAGAGCCTTGTCCGAGGAGGGTTGCCAAAAGATCTGAGGGGAGAGATATGGCAAGCGTTTGTAGGTGTGAAAGCCCGCAGGGTTGAGAGATACTACCAGGATTTGCTGGCACAAGGCGAAAATGATGACGACAACAACTTATCTGGTGTACCAAAAAAATGGAAAAAGCAGATTGAGAAGGACATACCACGTACATTCCCCGGTCACCCTGCATTGAATGAGAATGGTAGGAGTTCGTTAAGGCGCATACTTTTAGCATATGCTCTTCATAATCCCTCTGTTGGCTATTGTCAGGCAATGAATTTCTTTGCGGGCTTATTACTACTATTGATGCCTGAAGAAAATGCCTTTTGGACGTTGGTGGGGATCATAGATGACTATTTCGATGGGTACTACACTGAGGAGATGGTAGAATCTCAGGTGGACCAACTTGTTTTAGAGGAATTGATGCGTGAAAGATTTCCAAAATTGGTTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATCACTGGACCATGGTTCCTTTCCATTTTTGTGAATATGCTTCCTTGGGAAAGTGTTCTCCGAGTTTGGGATGTGCTTCTGTTTGAAGGAAATCGTGTCATGCTCTTCCGAACAGCATTCGCATTGATGGAGTTATATGGTAGTCCTGCATTAGTCACAACAAAAGATGCAGGGGATGCTATTACTTTGTTGCAATCCCTTTCTGGGTCAACATTTGATAGCAGCCAGCTTGTTTTGACTGCGTGCATGGGGTTTTTGGCAATAAGTGAATCTAGACTGCAAGAGTTGAGAGAAAATCATAGACCATCAGTAATAGCTGTGGTTGAGGAAAGAACAAAACGAGGTAGAATTTGGAAGGATTCCAAGGGCCTTGCATCTAAGTTGTATAGTTTTAAGCACGATCCTGGACCTCTTGTTGAATCAAAAATATTGTCTGAAGAAGATAAAGAGTCAGCTAATGAAAATGAAACTCACTTGGGTTGTCATTCCTCTAATTTGGATGACTTACTCAATGGTCTAGCAGTTGATTCAGAGTTAGATTCCCTTCCAGATCTTCAGGAACAGGTTGTTTGGTTGAAGGTCGAGCTGTGCAGATTGTTGGAGGAGAAAAGATCAGCTGTTTTGAGATCAGAAGAGCTGGAAACAGCACTTATGGAAATGGTCAAGCAAGATAATCGACGACAACTAAGTGCAAGGATTGAACAGTTGGAACTAGAGGTATCTGAGCTGCAGCAAATCTTAGCGCACAAAAAAGAACAAGAAACTGCTATGCTTCAGATCCTGATGCGTGTAGAACAAGAGGTAAAGGTCACAGAGGATGCTAGAATAAGTGCAGAGCAAGAGGTGGCTGCTCAAAAATATGCAGTTCATGTGCTTCAGGAAAAATATGAGATGGCTATGGCTTCTATTGTAGAGATGGAGAAGAGGGTGGTGATGGCAGAGTCAATGTTGGAGGCTACATTGAATTATGAATCAGGCCAAGTTAAAAAAACTTCATCTTCTCCAAGGTAA | 3126 | 42.87 | MVNFCWKARVDDQGTRFHDDSSKEIDGLLWSKDLGLHDHGQFSMAVIQANSTLEDQSQLESGPLNLSPSDPRATFVGVYDGHGAAEASRFVNDHLVCNIKSISLLERERDYLKTCWVFLKSCAISGFASTHRGISEDVIRQAFAATEEAFLSLVGKTWLVKPEMASSGSCCLVGLIANGYLHIANLGDSRVVLGRAEKGSKDIKAIQLSTDHNASFESVRKELREAHPQDPNIVQLKHRVWRVKGLIKQVSRSIGDAYLKKSEFNRAPLLPKFRLNKPFHKPILSSEPSISAHKIRPEDQFLIFASDGLWDHLSNQRAVDIVCSYPRNEEEDERSDKWKNFLDQAVESSQQCHNETEVQEKLKSEVSAQQADDFSEIYEELVGDDSSEKKSVSDDEKKSVSDESTKSDPEKKFQFSKETKACKFETWTHIRPSLGVIENMMASRVKKRKIIKDELKASADHLPPLDEGRSTLDASDEEFEVQDPTTGLSFYNVDASGAESDASDVAFKNKNVSAMENVTYDGDSQDVFFPWKEELKSLVRGGLPKDLRGEIWQAFVGVKARRVERYYQDLLAQGENDDDNNLSGVPKKWKKQIEKDIPRTFPGHPALNENGRSSLRRILLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDDYFDGYYTEEMVESQVDQLVLEELMRERFPKLVNHLDYLGVQVAWITGPWFLSIFVNMLPWESVLRVWDVLLFEGNRVMLFRTAFALMELYGSPALVTTKDAGDAITLLQSLSGSTFDSSQLVLTACMGFLAISESRLQELRENHRPSVIAVVEERTKRGRIWKDSKGLASKLYSFKHDPGPLVESKILSEEDKESANENETHLGCHSSNLDDLLNGLAVDSELDSLPDLQEQVVWLKVELCRLLEEKRSAVLRSEELETALMEMVKQDNRRQLSARIEQLELEVSELQQILAHKKEQETAMLQILMRVEQEVKVTEDARISAEQEVAAQKYAVHVLQEKYEMAMASIVEMEKRVVMAESMLEATLNYESGQVKKTSSSPR | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 56797362 | 56808327 | - | Bda018303.1 | Bda03g01739 | 4998 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda03g01739 | 1041 | MobiDBLite | consensus disorder prediction | 383 | 412 | - | - | |
| Bda03g01739 | 1041 | Coils | Coil | 966 | 986 | - | - | |
| Bda03g01739 | 1041 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 525 | 695 | IPR035969 | - | |
| Bda03g01739 | 1041 | Coils | Coil | 924 | 958 | - | - | |
| Bda03g01739 | 1041 | ProSiteProfiles | TBC/rab GAP domain profile. | 542 | 735 | IPR000195 | - | |
| Bda03g01739 | 1041 | SUPERFAMILY | PP2C-like | 50 | 327 | IPR036457 | - | |
| Bda03g01739 | 1041 | SMART | tbc_4 | 539 | 759 | IPR000195 | - | |
| Bda03g01739 | 1041 | Gene3D | putative rabgap domain of human tbc1 domain family member 14 like domains | 558 | 665 | - | - | |
| Bda03g01739 | 1041 | Pfam | Protein phosphatase 2C | 62 | 324 | IPR001932 | - | |
| Bda03g01739 | 1041 | Pfam | Rab-GTPase-TBC domain | 546 | 751 | IPR000195 | - | |
| Bda03g01739 | 1041 | SMART | PP2C_4 | 33 | 371 | IPR001932 | - | |
| Bda03g01739 | 1041 | ProSiteProfiles | PPM-type phosphatase domain profile. | 41 | 381 | IPR001932 | - | |
| Bda03g01739 | 1041 | ProSitePatterns | PPM-type phosphatase domain signature. | 75 | 83 | IPR000222 | GO:0043169 | |
| Bda03g01739 | 1041 | CDD | PP2Cc | 42 | 341 | IPR001932 | - | |
| Bda03g01739 | 1041 | Gene3D | - | 666 | 807 | - | - | |
| Bda03g01739 | 1041 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 675 | 788 | IPR035969 | - | |
| Bda03g01739 | 1041 | Gene3D | - | 32 | 414 | IPR036457 | - | |
| Bda03g01739 | 1041 | PANTHER | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN | 328 | 1024 | - | - | |
| Bda03g01739 | 1041 | PANTHER | YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN | 328 | 1024 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda03g01739 | Bda-Chr3:56797362 | Bda14g00328 | Bda-Chr14:2226944 | 7.96E-144 | dispersed | |
| Bda06g00404 | Bda-Chr6:6228691 | Bda03g01739 | Bda-Chr3:56797362 | 1.15E-41 | dispersed | |
| Bda14g00686 | Bda-Chr14:5114657 | Bda03g01739 | Bda-Chr3:56797362 | 1.96E-46 | dispersed | |
| Bda03g01739 | Bda-Chr3:56797362 | Bda14g00327 | Bda-Chr14:2222047 | 6.50E-127 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda03g01739 | - | - | jre:108985211 | 937.176 |