Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01739 ATGGTCAATTTCTGCTGGAAAGCTCGTGTCGACGACCAAGGAACTCGTTTTCACGATGATTCGAGTAAGGAAATTGATGGGTTGCTATGGTCTAAGGATTTGGGGCTCCATGACCATGGTCAATTTTCGATGGCAGTGATTCAGGCGAACTCAACGTTGGAGGATCAAAGCCAACTCGAATCAGGACCGTTGAACTTGAGTCCTTCCGATCCACGTGCAACTTTTGTCGGAGTATACGACGGCCACGGTGCAGCAGAGGCATCGCGTTTCGTCAACGATCATCTTGTCTGCAACATCAAGAGTATTTCTTTGCTAGAGAGAGAGAGAGACTACCTTAAAACTTGTTGGGTGTTCCTTAAAAGCTGTGCAATTTCAGGATTTGCATCTACTCATCGAGGGATATCCGAAGATGTCATTAGACAGGCTTTTGCAGCAACAGAAGAAGCTTTTCTCTCCCTCGTTGGGAAAACATGGCTTGTCAAGCCAGAGATGGCCTCGTCCGGTTCGTGTTGTCTGGTAGGACTAATCGCCAACGGCTATCTACATATTGCAAACCTGGGAGATTCCCGAGTTGTATTAGGCAGAGCTGAGAAAGGATCTAAAGACATCAAGGCTATTCAGCTATCCACAGATCACAATGCAAGTTTTGAGTCGGTGAGAAAGGAACTACGAGAGGCTCATCCACAAGATCCCAACATTGTTCAGCTTAAACACAGAGTTTGGCGCGTCAAAGGCCTGATCAAACAGGTCTCTCGTTCCATTGGAGATGCATATCTGAAGAAGTCAGAGTTCAATAGAGCGCCGCTGTTGCCGAAGTTTAGACTGAACAAACCATTTCACAAGCCAATTCTTAGCTCTGAACCATCAATTTCAGCTCACAAAATCCGTCCGGAAGATCAGTTTCTTATATTTGCTTCTGATGGTTTATGGGACCATCTTAGCAATCAGAGAGCAGTAGACATTGTTTGTAGTTACCCACGTAACGAGGAGGAAGACGAAAGGTCAGACAAATGGAAGAATTTCCTCGATCAAGCAGTGGAATCATCTCAACAGTGTCATAATGAAACGGAAGTTCAAGAAAAGTTGAAGTCTGAAGTTAGTGCGCAGCAAGCAGATGATTTTTCTGAGATATATGAGGAACTCGTAGGTGATGATTCAAGTGAGAAGAAGTCTGTTTCTGATGATGAGAAGAAATCCGTTTCTGATGAGTCAACAAAAAGTGATCCTGAAAAGAAGTTTCAATTTTCAAAAGAAACAAAAGCATGCAAGTTCGAGACATGGACTCATATTAGACCATCTCTTGGTGTGATAGAAAATATGATGGCTTCACGTGTGAAGAAAAGAAAAATAATTAAAGATGAGCTCAAAGCTAGTGCAGATCATCTTCCTCCTCTAGACGAGGGAAGATCTACGTTGGATGCTTCTGATGAAGAGTTTGAAGTTCAGGATCCTACCACTGGATTGTCATTTTACAATGTGGATGCTTCTGGAGCAGAAAGTGATGCAAGTGATGTTGCATTTAAGAATAAGAATGTATCCGCCATGGAAAATGTCACTTATGATGGTGACTCGCAAGATGTTTTTTTCCCTTGGAAGGAGGAACTGAAGAGCCTTGTCCGAGGAGGGTTGCCAAAAGATCTGAGGGGAGAGATATGGCAAGCGTTTGTAGGTGTGAAAGCCCGCAGGGTTGAGAGATACTACCAGGATTTGCTGGCACAAGGCGAAAATGATGACGACAACAACTTATCTGGTGTACCAAAAAAATGGAAAAAGCAGATTGAGAAGGACATACCACGTACATTCCCCGGTCACCCTGCATTGAATGAGAATGGTAGGAGTTCGTTAAGGCGCATACTTTTAGCATATGCTCTTCATAATCCCTCTGTTGGCTATTGTCAGGCAATGAATTTCTTTGCGGGCTTATTACTACTATTGATGCCTGAAGAAAATGCCTTTTGGACGTTGGTGGGGATCATAGATGACTATTTCGATGGGTACTACACTGAGGAGATGGTAGAATCTCAGGTGGACCAACTTGTTTTAGAGGAATTGATGCGTGAAAGATTTCCAAAATTGGTTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATCACTGGACCATGGTTCCTTTCCATTTTTGTGAATATGCTTCCTTGGGAAAGTGTTCTCCGAGTTTGGGATGTGCTTCTGTTTGAAGGAAATCGTGTCATGCTCTTCCGAACAGCATTCGCATTGATGGAGTTATATGGTAGTCCTGCATTAGTCACAACAAAAGATGCAGGGGATGCTATTACTTTGTTGCAATCCCTTTCTGGGTCAACATTTGATAGCAGCCAGCTTGTTTTGACTGCGTGCATGGGGTTTTTGGCAATAAGTGAATCTAGACTGCAAGAGTTGAGAGAAAATCATAGACCATCAGTAATAGCTGTGGTTGAGGAAAGAACAAAACGAGGTAGAATTTGGAAGGATTCCAAGGGCCTTGCATCTAAGTTGTATAGTTTTAAGCACGATCCTGGACCTCTTGTTGAATCAAAAATATTGTCTGAAGAAGATAAAGAGTCAGCTAATGAAAATGAAACTCACTTGGGTTGTCATTCCTCTAATTTGGATGACTTACTCAATGGTCTAGCAGTTGATTCAGAGTTAGATTCCCTTCCAGATCTTCAGGAACAGGTTGTTTGGTTGAAGGTCGAGCTGTGCAGATTGTTGGAGGAGAAAAGATCAGCTGTTTTGAGATCAGAAGAGCTGGAAACAGCACTTATGGAAATGGTCAAGCAAGATAATCGACGACAACTAAGTGCAAGGATTGAACAGTTGGAACTAGAGGTATCTGAGCTGCAGCAAATCTTAGCGCACAAAAAAGAACAAGAAACTGCTATGCTTCAGATCCTGATGCGTGTAGAACAAGAGGTAAAGGTCACAGAGGATGCTAGAATAAGTGCAGAGCAAGAGGTGGCTGCTCAAAAATATGCAGTTCATGTGCTTCAGGAAAAATATGAGATGGCTATGGCTTCTATTGTAGAGATGGAGAAGAGGGTGGTGATGGCAGAGTCAATGTTGGAGGCTACATTGAATTATGAATCAGGCCAAGTTAAAAAAACTTCATCTTCTCCAAGGTAA 3126 42.87 MVNFCWKARVDDQGTRFHDDSSKEIDGLLWSKDLGLHDHGQFSMAVIQANSTLEDQSQLESGPLNLSPSDPRATFVGVYDGHGAAEASRFVNDHLVCNIKSISLLERERDYLKTCWVFLKSCAISGFASTHRGISEDVIRQAFAATEEAFLSLVGKTWLVKPEMASSGSCCLVGLIANGYLHIANLGDSRVVLGRAEKGSKDIKAIQLSTDHNASFESVRKELREAHPQDPNIVQLKHRVWRVKGLIKQVSRSIGDAYLKKSEFNRAPLLPKFRLNKPFHKPILSSEPSISAHKIRPEDQFLIFASDGLWDHLSNQRAVDIVCSYPRNEEEDERSDKWKNFLDQAVESSQQCHNETEVQEKLKSEVSAQQADDFSEIYEELVGDDSSEKKSVSDDEKKSVSDESTKSDPEKKFQFSKETKACKFETWTHIRPSLGVIENMMASRVKKRKIIKDELKASADHLPPLDEGRSTLDASDEEFEVQDPTTGLSFYNVDASGAESDASDVAFKNKNVSAMENVTYDGDSQDVFFPWKEELKSLVRGGLPKDLRGEIWQAFVGVKARRVERYYQDLLAQGENDDDNNLSGVPKKWKKQIEKDIPRTFPGHPALNENGRSSLRRILLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDDYFDGYYTEEMVESQVDQLVLEELMRERFPKLVNHLDYLGVQVAWITGPWFLSIFVNMLPWESVLRVWDVLLFEGNRVMLFRTAFALMELYGSPALVTTKDAGDAITLLQSLSGSTFDSSQLVLTACMGFLAISESRLQELRENHRPSVIAVVEERTKRGRIWKDSKGLASKLYSFKHDPGPLVESKILSEEDKESANENETHLGCHSSNLDDLLNGLAVDSELDSLPDLQEQVVWLKVELCRLLEEKRSAVLRSEELETALMEMVKQDNRRQLSARIEQLELEVSELQQILAHKKEQETAMLQILMRVEQEVKVTEDARISAEQEVAAQKYAVHVLQEKYEMAMASIVEMEKRVVMAESMLEATLNYESGQVKKTSSSPR 1041
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 56797362 56808327 - Bda018303.1 Bda03g01739 4998
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01739 1041 MobiDBLite consensus disorder prediction 383 412 - -
Bda03g01739 1041 Coils Coil 966 986 - -
Bda03g01739 1041 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 525 695 IPR035969 -
Bda03g01739 1041 Coils Coil 924 958 - -
Bda03g01739 1041 ProSiteProfiles TBC/rab GAP domain profile. 542 735 IPR000195 -
Bda03g01739 1041 SUPERFAMILY PP2C-like 50 327 IPR036457 -
Bda03g01739 1041 SMART tbc_4 539 759 IPR000195 -
Bda03g01739 1041 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 558 665 - -
Bda03g01739 1041 Pfam Protein phosphatase 2C 62 324 IPR001932 -
Bda03g01739 1041 Pfam Rab-GTPase-TBC domain 546 751 IPR000195 -
Bda03g01739 1041 SMART PP2C_4 33 371 IPR001932 -
Bda03g01739 1041 ProSiteProfiles PPM-type phosphatase domain profile. 41 381 IPR001932 -
Bda03g01739 1041 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169
Bda03g01739 1041 CDD PP2Cc 42 341 IPR001932 -
Bda03g01739 1041 Gene3D - 666 807 - -
Bda03g01739 1041 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 675 788 IPR035969 -
Bda03g01739 1041 Gene3D - 32 414 IPR036457 -
Bda03g01739 1041 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 328 1024 - -
Bda03g01739 1041 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 328 1024 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01739 Bda-Chr3:56797362 Bda14g00328 Bda-Chr14:2226944 7.96E-144 dispersed
Bda06g00404 Bda-Chr6:6228691 Bda03g01739 Bda-Chr3:56797362 1.15E-41 dispersed
Bda14g00686 Bda-Chr14:5114657 Bda03g01739 Bda-Chr3:56797362 1.96E-46 dispersed
Bda03g01739 Bda-Chr3:56797362 Bda14g00327 Bda-Chr14:2222047 6.50E-127 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01739 - - jre:108985211 937.176