Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g01749 ATGGCAGACCAGCCTCTTTCTTCCGCGTTACTTACAGACCCAAAGGTGGCCATGGAAACAGAGAGCCCAACCGGACCCGAATTGAAGCGCCAACATCACTGCCTTGTAGAAGAGACAGACCCTCACTCCTTTTCCACTAAGAGACAGACCAAAGAAGCTTCTACTGATGACATTCGCTCAGAGGTCTCTAACCCTGTTATTTCTCCCAAGGAAAATCACTCCAGTTTACTAGATATCTCTAGCCAACCTCCTGAGTTGGTTAATGACCAAGTAGAGTGTGCAGACCTTGTTTCTGCTTGTTCTGCAAATTCTAGCGCGGAGGAGGCATCCAGCGATAAAGAGGTTGGTCGCAGTGACATGTGCCAAAATGATATTAATACATCTTGTCCAGCCCACATATCACAGTTTGTATTAGAAATTCCTAAGCATATCAGTTCAACTGGAGTTAGAAAAATTACGTTTAAGTTCAGCAAAAGAAAGGAGGACTATGACAATCACTTGTCTTTTTTGGCGCCTCGGACTGCTCTATATGGACATAATAATGGTAATTGGTCTGGCAGTTCTGAGGATGACCATATTGTTGGAACTTCTTTATCAGATGAAACATATCTAGAGGCACCACCACACACATTGTTGCACTCATGTGGACCTAATATGGAGATGAAAATGTCTAAGAAGGTCTTCCCGAGCAATTACCCGACAAATGTCAAAAAGCTGCTATCCACTGGTATTCTTGATGGAGCTAGAGTGAAGTATATTTCTACCACATGCAAGGTAAAGAAGTTAGATGGAATTATAAATGGCGGTGGATATATGTGTGGATGCTCATCGTGCAACTTCTCATCTGTTCTCAGTGCTTATGAGTTTGAGAATCATGCTGGTGTCAAGACTAGACATCCTAATAATCATATATATCTTGAGAATGGGAGGCCAATTTACAGTGTAATTCAAGAAATAAAAAATGCTCCTGTCAGGTTGTTGGATGAAGTGATAAAGGATGTCGCTGGCTCGTCCGTCAACATGGATTCACTTGAAGCTTGGAAAGTGGTTTCAATTTTGAAAAGTGTATTTGTTTTATTTGCCATTTTGTATGGTTCACATAGTGCAACGACATACATTACATGCAGATCAATCCCTTGTTTGTCTAAAACGATGGTGAAACAAAAGAAAATTGCTGAAGGAAGCACAAAAAGAAGGGATAATGATCTGCACAGGTTGCTTTTCATGCCAAATGGACTTCCAGACGGAGCTGAATTGGCATATTTTATTAAAGGGCAGAGAATTCTGGGCGGGTACAAGCAAGGAAATGGTATAGTTTGTAGCCATTGTGACAAAGAGGTTAGTCCTTCACAGTTTGAAGCTCATGCTGGAATGGCTGCTAGACGTCAACCTTATCGTCATATTTATACTTCAAATGGGATTACACTGCATGATATAGCTATTTCATTGGCCAACGGGCAAAAGCTTACCACAGGAGACAGTGATGATATGTGTGCCGCATGTGGGGATGGAGGAGATCTTATATTTTGTGCTGGATGCCCTCGGGCTTTTCATACTGCTTGTTTGCAGTTACAGTCAGCTCCTAATGGAGATTGGTGTTGCCCGAATTGTAGAGATAAAGTGGGTAACAGTAGGAAAACGTCTTCTGGAGATTCATCAAGCCTTGCAAAACCAATTGTTATACGTTTAACGCGAGTTGTCAAATCACCAGATTTTGAGATTGGTGGATGTGTTGTTTGCAGGTGGGGGCATGATTTTAGTGTTGCCAAGTTTGATGAACAGACTGTTATGCTTTGCGATCAATGTGAGAGAGAGTTTCATGTTGGCTGCCTGCGCAGTAGTGGATTATGTGATTTAGAGGAACTTCCAAAAGATAAGTGGTTCTGCTGTGACGACTGCAATAGGATCCATGTGGCTTTACAGAATATAGTTTTGAATGGTGCAGAGAACATTCCAGCTTCATTGTTCAACTTAATAGTCAGAAAGCATATGGAGAAAGGGATATTTATTGATAGAACAGTTAACGATGTCCAATGGAGAATTTTAAGTGGAAAAAGTCGCTATCCAGTAGATCTTCCATTACTTTCAAGGGTTGTGGCTATGTTTCGAGAGTGTTTTGATCCGATTGTTGCAAATTCCGGTCGTGATCTTATACCAGTTATGGTGTATGGGAGAAATATATCTGGTCAAGAGTTTGGGGGAATGTACTGCGTCGTCCTAATTGTGAGGTCCGTTGTCGTATCTGCTGGTCTTCTTAGGATTTTCGGCCGCCAGGTTGCTGAGCTTCCTATAGTGGCGACGAGCAGAGAACATCAACGCAAAGGATATTTCCAAGTATTGTTCTCATGCATAGAAAGACTACTTTGTTCCCTAAAAGTAGAAAATGTGGTGCTCCCAGCAGCTGAGGACGCGGAGTCAATTTGGACGAAAAAATTGGGTTTTAGACGGATGAGCGAGGATCAATTGAAGAAGTATTTGAGGGAGGTGCAGTTGACGATATTTAAAGGCACATCCATGCTGGAGAAGGTGGTGGAGCGGACGCCAGAATGA 2550 42.2 MADQPLSSALLTDPKVAMETESPTGPELKRQHHCLVEETDPHSFSTKRQTKEASTDDIRSEVSNPVISPKENHSSLLDISSQPPELVNDQVECADLVSACSANSSAEEASSDKEVGRSDMCQNDINTSCPAHISQFVLEIPKHISSTGVRKITFKFSKRKEDYDNHLSFLAPRTALYGHNNGNWSGSSEDDHIVGTSLSDETYLEAPPHTLLHSCGPNMEMKMSKKVFPSNYPTNVKKLLSTGILDGARVKYISTTCKVKKLDGIINGGGYMCGCSSCNFSSVLSAYEFENHAGVKTRHPNNHIYLENGRPIYSVIQEIKNAPVRLLDEVIKDVAGSSVNMDSLEAWKVVSILKSVFVLFAILYGSHSATTYITCRSIPCLSKTMVKQKKIAEGSTKRRDNDLHRLLFMPNGLPDGAELAYFIKGQRILGGYKQGNGIVCSHCDKEVSPSQFEAHAGMAARRQPYRHIYTSNGITLHDIAISLANGQKLTTGDSDDMCAACGDGGDLIFCAGCPRAFHTACLQLQSAPNGDWCCPNCRDKVGNSRKTSSGDSSSLAKPIVIRLTRVVKSPDFEIGGCVVCRWGHDFSVAKFDEQTVMLCDQCEREFHVGCLRSSGLCDLEELPKDKWFCCDDCNRIHVALQNIVLNGAENIPASLFNLIVRKHMEKGIFIDRTVNDVQWRILSGKSRYPVDLPLLSRVVAMFRECFDPIVANSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSVVVSAGLLRIFGRQVAELPIVATSREHQRKGYFQVLFSCIERLLCSLKVENVVLPAAEDAESIWTKKLGFRRMSEDQLKKYLREVQLTIFKGTSMLEKVVERTPE 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 56857825 56863866 - Bda018314.1 Bda03g01749 5008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g01749 849 Pfam Tify domain binding domain 431 480 IPR032308 -
Bda03g01749 849 Pfam Tify domain binding domain 264 318 IPR032308 -
Bda03g01749 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 575 636 IPR013083 -
Bda03g01749 849 CDD PHD1_AIRE 497 537 - -
Bda03g01749 849 SUPERFAMILY FYVE/PHD zinc finger 493 541 IPR011011 -
Bda03g01749 849 SUPERFAMILY FYVE/PHD zinc finger 574 631 IPR011011 -
Bda03g01749 849 ProSitePatterns Zinc finger PHD-type signature. 498 537 IPR019786 -
Bda03g01749 849 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 731 820 IPR016181 -
Bda03g01749 849 Pfam PHD-finger 497 539 IPR019787 -
Bda03g01749 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 561 IPR013083 -
Bda03g01749 849 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 381 845 - -
Bda03g01749 849 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 37 349 - -
Bda03g01749 849 ProSiteProfiles Zinc finger PHD-type profile. 495 540 IPR019787 -
Bda03g01749 849 PANTHER AUTOIMMUNE REGULATOR 381 845 - -
Bda03g01749 849 Gene3D - 691 844 - -
Bda03g01749 849 ProSitePatterns Zinc finger PHD-type signature. 577 633 IPR019786 -
Bda03g01749 849 MobiDBLite consensus disorder prediction 59 76 - -
Bda03g01749 849 MobiDBLite consensus disorder prediction 1 76 - -
Bda03g01749 849 SMART PHD_3 576 634 IPR001965 -
Bda03g01749 849 SMART PHD_3 497 538 IPR001965 -
Bda03g01749 849 PANTHER AUTOIMMUNE REGULATOR 37 349 - -
Bda03g01749 849 MobiDBLite consensus disorder prediction 25 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g01749 - - - csv:101207817 1124.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01749 Bda05g01208 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00726 Bda-Chr2:48115506 Bda03g01749 Bda-Chr3:56857825 7.57E-162 dispersed
Bda03g01701 Bda-Chr3:56428546 Bda03g01749 Bda-Chr3:56857825 1.35E-11 dispersed
Bda03g01749 Bda-Chr3:56857825 Bda10g00577 Bda-Chr10:39749334 5.44E-43 dispersed
Bda03g01749 Bda-Chr3:56857825 Bda05g01208 Bda-Chr5:60040519 1.01E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g621 . . . . . . Bma04g01665 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda03g01749 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00235 . 8 379 PHD Transcription Factor Family AT1G05380 54.8 1.5e-114 411.4
Bda03g01749 BCT 22 844 PHD Transcription Factor Family AT3G53680 53.6 2.2e-245 845.5
Bda14g00310 . 437 566 PHD Transcription Factor Family AT3G53680 53.8 4.0e-37 153.7
Bda15g00213 . 292 421 PHD Transcription Factor Family AT3G53680 53.1 3.4e-36 150.6
Bda08g00235 . 57 379 PHD Transcription Factor Family AT4G14920 59.6 4.0e-112 403.3
Bda03g00173 . 139 382 PHD Transcription Factor Family AT5G58610 54.0 4.2e-75 280.0
Bda10g01164 . 10 625 PHD Transcription Factor Family AT5G22260 50.1 3.7e-174 608.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15771 PF16135 TDBD 1.70E-12 No_clan Bda TR