Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda04g00003 | ATGACAGATCCGGTGATTGTATCCTCAGGACAAACGTATGAGCGAGCTTTTATCAAGGATTGGATTGATCTTGGGCTTACTGTTTGTCCTAAGACTCGGCAGACATTAGCTCACACTAATCTAATACCCAATTACACTGTTAAGGCACTGATTGCAAACTGGTGCGAGTCAAACAATGTGAAGCTTCCTGATCCCTTGAAGTCTGTGACTGCAAACCAGCCCTCTCCCCTTCTTGGCAGCAGAAACTCTGTGGTACACCGAGACTCACCAGTGTTCCCTTATAATAGAAACTATCCACCAATGTCCCCAGAATCAACTCGGTCTGAAGGTTCTCCCGCTAACATCTTAAGTTCGCCAGGTAGGAACCTGCCCCAGCCAGATAATTCCTTACCTTCTGTTCCTGTAAATGTTCTGGGTTTGGATACTGAGAGAGTGTCGCTTACAACCTCAGAAGATAGTGTAGATACGTTGGAGGATGACAATTTAGTTATCCAATCTTCTATTACACCATTAAGAACAGATTATCACGGTGCTTCAGGAGCTGAATTGCCTCAAAGCCATTCCAGAACGTCCTCTTCGTCCAATGCAGTTTCTGATTTTCCTCAAGAAGTTTCAGAAGATGCCGTAGCCTCATTGGTTTCAACTATGACAGGAAGCGCCTCTGATGCCTCTGCAGAGGTAGAGCCACTGAAGCCTGATGCTTTGACAAACACTTTGCAGAGAGAATCTGATCAGTTTCCTCCTAAACTAATGGAGACAAGATCACGAAGTCATAATCTGTGGCGCCGACCATCTGAAAGGTTTATTCCTAGAATAGTTTCTTCTTCTTCTTCTTCTATTGAAACTAGGCCAGATCTTTCTGGTGTTGAAGCCCAGGTTGAGAAGCTGGCTGAGGACTTGAAGAACCCTTCACTAGAGACTATAAGAGTGGCAGCTGCAGATATACGGCTACTAGCCAAGCACAATATGGATAACCGGATTGTGATTGCTAAGTGTGGGGTCATTACGTTGTTAGTTGATTTGCTCATGTCGACAGACCCAGAAATCCAGGAGCATGCTGTGACAGCTCTTCTTAACTTATCAATCAATGATAACAATAAAACTATCATTGCCCAAGCCAAAGCAATTGAACCCCTCATCCAAGTTCTTCAAACTGGGAGCCCTGAGGCAAAGGAGAATTCAGCGGCCACTCTCTTCAGCCTGTCAGTGATTGAAGAAAACAAAATAAAGATTGGAAGATCAGGGGCAATAGTACCTCTTGTTGATTTGCTGGGAAATGGGACTCCAAGGGGAAAGAAAGATGCTGCAACCGCGCTGTTTAATTTGTCAATATTTCACGAAAACAAGACAAGAATTGTACAAGCTGGGGCTGTAAAACATCTGGTGGAGTTGATGGATCCAGCTGCTGGAATGGTGGACAAAGCAGTTGCTGTGTTGGCCAATCTCGCCACGATACCTGAGGGAAGAACAGCAATCGGTCAGGAGGGTGGAATCCCAGTGCTTGTGGAGGTTGTTGAGCTCGGTTCTGCTAGAGGGAAGGAGAATGCGGCTGCTGCATTGTTGCAGCTGTGCACGAGTAGCAATAGATTCTGCAGTCAGGTTCTTCAGGAAGGAGCAGTCCCTCCATTAGTGGCATTGTCGCAATCTGGCACTCCCAGGGCAAGAGAAAAGGCACAAACACTTCTAAGGTATTTCAGAAACCACAGACATGGTAATGGAGGGAGAGGGTGA | 1731 | 45.81 | MTDPVIVSSGQTYERAFIKDWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPLKSVTANQPSPLLGSRNSVVHRDSPVFPYNRNYPPMSPESTRSEGSPANILSSPGRNLPQPDNSLPSVPVNVLGLDTERVSLTTSEDSVDTLEDDNLVIQSSITPLRTDYHGASGAELPQSHSRTSSSSNAVSDFPQEVSEDAVASLVSTMTGSASDASAEVEPLKPDALTNTLQRESDQFPPKLMETRSRSHNLWRRPSERFIPRIVSSSSSSIETRPDLSGVEAQVEKLAEDLKNPSLETIRVAAADIRLLAKHNMDNRIVIAKCGVITLLVDLLMSTDPEIQEHAVTALLNLSINDNNKTIIAQAKAIEPLIQVLQTGSPEAKENSAATLFSLSVIEENKIKIGRSGAIVPLVDLLGNGTPRGKKDAATALFNLSIFHENKTRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTSSNRFCSQVLQEGAVPPLVALSQSGTPRAREKAQTLLRYFRNHRHGNGGRG | 576 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 39685 | 41494 | + | Bda018826.1 | Bda04g00003 | 5025 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda04g00003 | 576 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 333 | 375 | IPR000225 | GO:0005515 | |
Bda04g00003 | 576 | Pfam | Armadillo/beta-catenin-like repeat | 324 | 361 | IPR000225 | GO:0005515 | |
Bda04g00003 | 576 | Pfam | Armadillo/beta-catenin-like repeat | 406 | 443 | IPR000225 | GO:0005515 | |
Bda04g00003 | 576 | Pfam | Armadillo/beta-catenin-like repeat | 363 | 402 | IPR000225 | GO:0005515 | |
Bda04g00003 | 576 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 62 | IPR013083 | - | |
Bda04g00003 | 576 | MobiDBLite | consensus disorder prediction | 183 | 200 | - | - | |
Bda04g00003 | 576 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 415 | 457 | IPR000225 | GO:0005515 | |
Bda04g00003 | 576 | SMART | Ubox_2 | 1 | 54 | IPR003613 | GO:0004842|GO:0016567 | |
Bda04g00003 | 576 | MobiDBLite | consensus disorder prediction | 173 | 200 | - | - | |
Bda04g00003 | 576 | Pfam | U-box domain | 1 | 58 | IPR003613 | GO:0004842|GO:0016567 | |
Bda04g00003 | 576 | MobiDBLite | consensus disorder prediction | 73 | 128 | - | - | |
Bda04g00003 | 576 | PANTHER | U BOX DOMAIN-CONTAINING | 1 | 572 | - | - | |
Bda04g00003 | 576 | CDD | RING-Ubox_PUB | 1 | 34 | IPR045210 | - | |
Bda04g00003 | 576 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 1 | 572 | - | - | |
Bda04g00003 | 576 | MobiDBLite | consensus disorder prediction | 99 | 128 | - | - | |
Bda04g00003 | 576 | SMART | arm_5 | 445 | 484 | IPR000225 | GO:0005515 | |
Bda04g00003 | 576 | SMART | arm_5 | 363 | 403 | IPR000225 | GO:0005515 | |
Bda04g00003 | 576 | SMART | arm_5 | 404 | 444 | IPR000225 | GO:0005515 | |
Bda04g00003 | 576 | SMART | arm_5 | 322 | 362 | IPR000225 | GO:0005515 | |
Bda04g00003 | 576 | SMART | arm_5 | 485 | 525 | IPR000225 | GO:0005515 | |
Bda04g00003 | 576 | ProSiteProfiles | U-box domain profile. | 1 | 61 | IPR003613 | GO:0004842|GO:0016567 | |
Bda04g00003 | 576 | SUPERFAMILY | ARM repeat | 293 | 565 | IPR016024 | - | |
Bda04g00003 | 576 | Gene3D | - | 273 | 570 | IPR011989 | - | |
Bda04g00003 | 576 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 456 | 497 | IPR000225 | GO:0005515 | |
Bda04g00003 | 576 | SUPERFAMILY | RING/U-box | 1 | 65 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda02g00903 | Bda-Chr2:49352891 | Bda04g00003 | Bda-Chr4:39685 | 1.68E-79 | dispersed | |
Bda04g00003 | Bda-Chr4:39685 | Bda14g01265 | Bda-Chr14:13332278 | 6.90E-158 | dispersed | |
Bda04g00080 | Bda-Chr4:1615316 | Bda04g00003 | Bda-Chr4:39685 | 3.53E-06 | dispersed | |
Bda07g01092 | Bda-Chr7:12813770 | Bda04g00003 | Bda-Chr4:39685 | 3.81E-33 | dispersed | |
Bda08g00067 | Bda-Chr8:571270 | Bda04g00003 | Bda-Chr4:39685 | 1.35E-11 | dispersed | |
Bda14g01525 | Bda-Chr14:24922062 | Bda04g00003 | Bda-Chr4:39685 | 3.06E-08 | dispersed | |
Bda15g00690 | Bda-Chr15:10337815 | Bda04g00003 | Bda-Chr4:39685 | 1.65E-17 | dispersed | |
Bda04g00003 | Bda-Chr4:39685 | Bda07g00590 | Bda-Chr7:7230889 | 3.96E-09 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda04g00003 | - | - | tcc:18611233 | 702.59 |