Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00003 ATGACAGATCCGGTGATTGTATCCTCAGGACAAACGTATGAGCGAGCTTTTATCAAGGATTGGATTGATCTTGGGCTTACTGTTTGTCCTAAGACTCGGCAGACATTAGCTCACACTAATCTAATACCCAATTACACTGTTAAGGCACTGATTGCAAACTGGTGCGAGTCAAACAATGTGAAGCTTCCTGATCCCTTGAAGTCTGTGACTGCAAACCAGCCCTCTCCCCTTCTTGGCAGCAGAAACTCTGTGGTACACCGAGACTCACCAGTGTTCCCTTATAATAGAAACTATCCACCAATGTCCCCAGAATCAACTCGGTCTGAAGGTTCTCCCGCTAACATCTTAAGTTCGCCAGGTAGGAACCTGCCCCAGCCAGATAATTCCTTACCTTCTGTTCCTGTAAATGTTCTGGGTTTGGATACTGAGAGAGTGTCGCTTACAACCTCAGAAGATAGTGTAGATACGTTGGAGGATGACAATTTAGTTATCCAATCTTCTATTACACCATTAAGAACAGATTATCACGGTGCTTCAGGAGCTGAATTGCCTCAAAGCCATTCCAGAACGTCCTCTTCGTCCAATGCAGTTTCTGATTTTCCTCAAGAAGTTTCAGAAGATGCCGTAGCCTCATTGGTTTCAACTATGACAGGAAGCGCCTCTGATGCCTCTGCAGAGGTAGAGCCACTGAAGCCTGATGCTTTGACAAACACTTTGCAGAGAGAATCTGATCAGTTTCCTCCTAAACTAATGGAGACAAGATCACGAAGTCATAATCTGTGGCGCCGACCATCTGAAAGGTTTATTCCTAGAATAGTTTCTTCTTCTTCTTCTTCTATTGAAACTAGGCCAGATCTTTCTGGTGTTGAAGCCCAGGTTGAGAAGCTGGCTGAGGACTTGAAGAACCCTTCACTAGAGACTATAAGAGTGGCAGCTGCAGATATACGGCTACTAGCCAAGCACAATATGGATAACCGGATTGTGATTGCTAAGTGTGGGGTCATTACGTTGTTAGTTGATTTGCTCATGTCGACAGACCCAGAAATCCAGGAGCATGCTGTGACAGCTCTTCTTAACTTATCAATCAATGATAACAATAAAACTATCATTGCCCAAGCCAAAGCAATTGAACCCCTCATCCAAGTTCTTCAAACTGGGAGCCCTGAGGCAAAGGAGAATTCAGCGGCCACTCTCTTCAGCCTGTCAGTGATTGAAGAAAACAAAATAAAGATTGGAAGATCAGGGGCAATAGTACCTCTTGTTGATTTGCTGGGAAATGGGACTCCAAGGGGAAAGAAAGATGCTGCAACCGCGCTGTTTAATTTGTCAATATTTCACGAAAACAAGACAAGAATTGTACAAGCTGGGGCTGTAAAACATCTGGTGGAGTTGATGGATCCAGCTGCTGGAATGGTGGACAAAGCAGTTGCTGTGTTGGCCAATCTCGCCACGATACCTGAGGGAAGAACAGCAATCGGTCAGGAGGGTGGAATCCCAGTGCTTGTGGAGGTTGTTGAGCTCGGTTCTGCTAGAGGGAAGGAGAATGCGGCTGCTGCATTGTTGCAGCTGTGCACGAGTAGCAATAGATTCTGCAGTCAGGTTCTTCAGGAAGGAGCAGTCCCTCCATTAGTGGCATTGTCGCAATCTGGCACTCCCAGGGCAAGAGAAAAGGCACAAACACTTCTAAGGTATTTCAGAAACCACAGACATGGTAATGGAGGGAGAGGGTGA 1731 45.81 MTDPVIVSSGQTYERAFIKDWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPLKSVTANQPSPLLGSRNSVVHRDSPVFPYNRNYPPMSPESTRSEGSPANILSSPGRNLPQPDNSLPSVPVNVLGLDTERVSLTTSEDSVDTLEDDNLVIQSSITPLRTDYHGASGAELPQSHSRTSSSSNAVSDFPQEVSEDAVASLVSTMTGSASDASAEVEPLKPDALTNTLQRESDQFPPKLMETRSRSHNLWRRPSERFIPRIVSSSSSSIETRPDLSGVEAQVEKLAEDLKNPSLETIRVAAADIRLLAKHNMDNRIVIAKCGVITLLVDLLMSTDPEIQEHAVTALLNLSINDNNKTIIAQAKAIEPLIQVLQTGSPEAKENSAATLFSLSVIEENKIKIGRSGAIVPLVDLLGNGTPRGKKDAATALFNLSIFHENKTRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTSSNRFCSQVLQEGAVPPLVALSQSGTPRAREKAQTLLRYFRNHRHGNGGRG 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39685 41494 + Bda018826.1 Bda04g00003 5025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00003 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 333 375 IPR000225 GO:0005515
Bda04g00003 576 Pfam Armadillo/beta-catenin-like repeat 324 361 IPR000225 GO:0005515
Bda04g00003 576 Pfam Armadillo/beta-catenin-like repeat 406 443 IPR000225 GO:0005515
Bda04g00003 576 Pfam Armadillo/beta-catenin-like repeat 363 402 IPR000225 GO:0005515
Bda04g00003 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 62 IPR013083 -
Bda04g00003 576 MobiDBLite consensus disorder prediction 183 200 - -
Bda04g00003 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 457 IPR000225 GO:0005515
Bda04g00003 576 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Bda04g00003 576 MobiDBLite consensus disorder prediction 173 200 - -
Bda04g00003 576 Pfam U-box domain 1 58 IPR003613 GO:0004842|GO:0016567
Bda04g00003 576 MobiDBLite consensus disorder prediction 73 128 - -
Bda04g00003 576 PANTHER U BOX DOMAIN-CONTAINING 1 572 - -
Bda04g00003 576 CDD RING-Ubox_PUB 1 34 IPR045210 -
Bda04g00003 576 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 572 - -
Bda04g00003 576 MobiDBLite consensus disorder prediction 99 128 - -
Bda04g00003 576 SMART arm_5 445 484 IPR000225 GO:0005515
Bda04g00003 576 SMART arm_5 363 403 IPR000225 GO:0005515
Bda04g00003 576 SMART arm_5 404 444 IPR000225 GO:0005515
Bda04g00003 576 SMART arm_5 322 362 IPR000225 GO:0005515
Bda04g00003 576 SMART arm_5 485 525 IPR000225 GO:0005515
Bda04g00003 576 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Bda04g00003 576 SUPERFAMILY ARM repeat 293 565 IPR016024 -
Bda04g00003 576 Gene3D - 273 570 IPR011989 -
Bda04g00003 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 456 497 IPR000225 GO:0005515
Bda04g00003 576 SUPERFAMILY RING/U-box 1 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00903 Bda-Chr2:49352891 Bda04g00003 Bda-Chr4:39685 1.68E-79 dispersed
Bda04g00003 Bda-Chr4:39685 Bda14g01265 Bda-Chr14:13332278 6.90E-158 dispersed
Bda04g00080 Bda-Chr4:1615316 Bda04g00003 Bda-Chr4:39685 3.53E-06 dispersed
Bda07g01092 Bda-Chr7:12813770 Bda04g00003 Bda-Chr4:39685 3.81E-33 dispersed
Bda08g00067 Bda-Chr8:571270 Bda04g00003 Bda-Chr4:39685 1.35E-11 dispersed
Bda14g01525 Bda-Chr14:24922062 Bda04g00003 Bda-Chr4:39685 3.06E-08 dispersed
Bda15g00690 Bda-Chr15:10337815 Bda04g00003 Bda-Chr4:39685 1.65E-17 dispersed
Bda04g00003 Bda-Chr4:39685 Bda07g00590 Bda-Chr7:7230889 3.96E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00003 - - tcc:18611233 702.59