Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00003 ATGACAGATCCGGTGATTGTATCCTCAGGACAAACGTATGAGCGAGCTTTTATCAAGGATTGGATTGATCTTGGGCTTACTGTTTGTCCTAAGACTCGGCAGACATTAGCTCACACTAATCTAATACCCAATTACACTGTTAAGGCACTGATTGCAAACTGGTGCGAGTCAAACAATGTGAAGCTTCCTGATCCCTTGAAGTCTGTGACTGCAAACCAGCCCTCTCCCCTTCTTGGCAGCAGAAACTCTGTGGTACACCGAGACTCACCAGTGTTCCCTTATAATAGAAACTATCCACCAATGTCCCCAGAATCAACTCGGTCTGAAGGTTCTCCCGCTAACATCTTAAGTTCGCCAGGTAGGAACCTGCCCCAGCCAGATAATTCCTTACCTTCTGTTCCTGTAAATGTTCTGGGTTTGGATACTGAGAGAGTGTCGCTTACAACCTCAGAAGATAGTGTAGATACGTTGGAGGATGACAATTTAGTTATCCAATCTTCTATTACACCATTAAGAACAGATTATCACGGTGCTTCAGGAGCTGAATTGCCTCAAAGCCATTCCAGAACGTCCTCTTCGTCCAATGCAGTTTCTGATTTTCCTCAAGAAGTTTCAGAAGATGCCGTAGCCTCATTGGTTTCAACTATGACAGGAAGCGCCTCTGATGCCTCTGCAGAGGTAGAGCCACTGAAGCCTGATGCTTTGACAAACACTTTGCAGAGAGAATCTGATCAGTTTCCTCCTAAACTAATGGAGACAAGATCACGAAGTCATAATCTGTGGCGCCGACCATCTGAAAGGTTTATTCCTAGAATAGTTTCTTCTTCTTCTTCTTCTATTGAAACTAGGCCAGATCTTTCTGGTGTTGAAGCCCAGGTTGAGAAGCTGGCTGAGGACTTGAAGAACCCTTCACTAGAGACTATAAGAGTGGCAGCTGCAGATATACGGCTACTAGCCAAGCACAATATGGATAACCGGATTGTGATTGCTAAGTGTGGGGTCATTACGTTGTTAGTTGATTTGCTCATGTCGACAGACCCAGAAATCCAGGAGCATGCTGTGACAGCTCTTCTTAACTTATCAATCAATGATAACAATAAAACTATCATTGCCCAAGCCAAAGCAATTGAACCCCTCATCCAAGTTCTTCAAACTGGGAGCCCTGAGGCAAAGGAGAATTCAGCGGCCACTCTCTTCAGCCTGTCAGTGATTGAAGAAAACAAAATAAAGATTGGAAGATCAGGGGCAATAGTACCTCTTGTTGATTTGCTGGGAAATGGGACTCCAAGGGGAAAGAAAGATGCTGCAACCGCGCTGTTTAATTTGTCAATATTTCACGAAAACAAGACAAGAATTGTACAAGCTGGGGCTGTAAAACATCTGGTGGAGTTGATGGATCCAGCTGCTGGAATGGTGGACAAAGCAGTTGCTGTGTTGGCCAATCTCGCCACGATACCTGAGGGAAGAACAGCAATCGGTCAGGAGGGTGGAATCCCAGTGCTTGTGGAGGTTGTTGAGCTCGGTTCTGCTAGAGGGAAGGAGAATGCGGCTGCTGCATTGTTGCAGCTGTGCACGAGTAGCAATAGATTCTGCAGTCAGGTTCTTCAGGAAGGAGCAGTCCCTCCATTAGTGGCATTGTCGCAATCTGGCACTCCCAGGGCAAGAGAAAAGGCACAAACACTTCTAAGGTATTTCAGAAACCACAGACATGGTAATGGAGGGAGAGGGTGA 1731 45.81 MTDPVIVSSGQTYERAFIKDWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPLKSVTANQPSPLLGSRNSVVHRDSPVFPYNRNYPPMSPESTRSEGSPANILSSPGRNLPQPDNSLPSVPVNVLGLDTERVSLTTSEDSVDTLEDDNLVIQSSITPLRTDYHGASGAELPQSHSRTSSSSNAVSDFPQEVSEDAVASLVSTMTGSASDASAEVEPLKPDALTNTLQRESDQFPPKLMETRSRSHNLWRRPSERFIPRIVSSSSSSIETRPDLSGVEAQVEKLAEDLKNPSLETIRVAAADIRLLAKHNMDNRIVIAKCGVITLLVDLLMSTDPEIQEHAVTALLNLSINDNNKTIIAQAKAIEPLIQVLQTGSPEAKENSAATLFSLSVIEENKIKIGRSGAIVPLVDLLGNGTPRGKKDAATALFNLSIFHENKTRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTSSNRFCSQVLQEGAVPPLVALSQSGTPRAREKAQTLLRYFRNHRHGNGGRG 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39685 41494 + Bda018826.1 Bda04g00003 5025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00003 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 333 375 IPR000225 GO:0005515
Bda04g00003 576 Pfam Armadillo/beta-catenin-like repeat 324 361 IPR000225 GO:0005515
Bda04g00003 576 Pfam Armadillo/beta-catenin-like repeat 406 443 IPR000225 GO:0005515
Bda04g00003 576 Pfam Armadillo/beta-catenin-like repeat 363 402 IPR000225 GO:0005515
Bda04g00003 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 62 IPR013083 -
Bda04g00003 576 MobiDBLite consensus disorder prediction 183 200 - -
Bda04g00003 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 457 IPR000225 GO:0005515
Bda04g00003 576 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Bda04g00003 576 MobiDBLite consensus disorder prediction 173 200 - -
Bda04g00003 576 Pfam U-box domain 1 58 IPR003613 GO:0004842|GO:0016567
Bda04g00003 576 MobiDBLite consensus disorder prediction 73 128 - -
Bda04g00003 576 PANTHER U BOX DOMAIN-CONTAINING 1 572 - -
Bda04g00003 576 CDD RING-Ubox_PUB 1 34 IPR045210 -
Bda04g00003 576 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 572 - -
Bda04g00003 576 MobiDBLite consensus disorder prediction 99 128 - -
Bda04g00003 576 SMART arm_5 445 484 IPR000225 GO:0005515
Bda04g00003 576 SMART arm_5 363 403 IPR000225 GO:0005515
Bda04g00003 576 SMART arm_5 404 444 IPR000225 GO:0005515
Bda04g00003 576 SMART arm_5 322 362 IPR000225 GO:0005515
Bda04g00003 576 SMART arm_5 485 525 IPR000225 GO:0005515
Bda04g00003 576 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Bda04g00003 576 SUPERFAMILY ARM repeat 293 565 IPR016024 -
Bda04g00003 576 Gene3D - 273 570 IPR011989 -
Bda04g00003 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 456 497 IPR000225 GO:0005515
Bda04g00003 576 SUPERFAMILY RING/U-box 1 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00003 - - - tcc:18611233 702.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00903 Bda-Chr2:49352891 Bda04g00003 Bda-Chr4:39685 1.68E-79 dispersed
Bda04g00003 Bda-Chr4:39685 Bda14g01265 Bda-Chr14:13332278 6.90E-158 dispersed
Bda04g00080 Bda-Chr4:1615316 Bda04g00003 Bda-Chr4:39685 3.53E-06 dispersed
Bda07g01092 Bda-Chr7:12813770 Bda04g00003 Bda-Chr4:39685 3.81E-33 dispersed
Bda08g00067 Bda-Chr8:571270 Bda04g00003 Bda-Chr4:39685 1.35E-11 dispersed
Bda14g01525 Bda-Chr14:24922062 Bda04g00003 Bda-Chr4:39685 3.06E-08 dispersed
Bda15g00690 Bda-Chr15:10337815 Bda04g00003 Bda-Chr4:39685 1.65E-17 dispersed
Bda04g00003 Bda-Chr4:39685 Bda07g00590 Bda-Chr7:7230889 3.96E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g972 Blo04g01074 . Bda04g00003 . Bpe06g00004 Bpe15g00315 Bma09g00003 . . Cmo07g00686 Cma02g00507 Cma20g00982 Car02g00348 Car20g00844 . Cpe19g00648 Cpe16g00136 Bhi03g00986 Tan03g1617 . . . . . Cla01g01681 Cam01g1770 Cec04g1418 Cco04g1481 Clacu01g1794 Cmu01g1675 Cre04g1348 Cone6ag1431 . Cone8ag0150 Cone12ag0156 Lsi01g00933 Csa06g02989 . Cme08g00615 . . . . . . Bma03g01129 . . Cmo02g00518 Cmo20g00999 . Cma07g00675 . . . Cpe05g01172 . . . . . . . . . . . . . . . . Chy02g00870 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01704 . 1 1018 U-box Gene Family AT5G15400 73.3 0.0e+00 1481.1
Bda04g00508 . 1 781 U-box Gene Family AT3G54790 52.0 1.6e-125 447.2
Bda04g00003 . 1 576 U-box Gene Family AT2G23140 58.7 1.5e-76 284.3
Bda14g01265 . 195 724 U-box Gene Family AT2G23140 53.5 1.7e-72 270.8
Bda09g01286 . 1 359 U-box Gene Family AT4G21350 58.4 4.8e-115 411.4
Bda01g01749 . 1 360 U-box Gene Family AT4G21350 61.0 1.1e-114 410.2
Bda12g00757 . 134 457 U-box Gene Family AT3G07360 52.6 1.3e-84 310.1
Bda10g00536 . 134 457 U-box Gene Family AT3G07360 58.2 2.6e-77 285.8
Bda14g01078 . 202 414 U-box Gene Family AT1G71020 64.5 9.9e-73 271.2
Bda14g01065 . 238 467 U-box Gene Family AT1G71020 60.2 6.0e-70 261.9
Bda14g00363 . 213 385 U-box Gene Family AT1G71020 57.4 1.2e-49 194.5
Bda07g00590 CCT 254 421 U-box Gene Family AT1G71020 57.2 1.6e-46 184.1
Bda02g00818 CCT 249 418 U-box Gene Family AT1G71020 55.6 2.1e-46 183.7
Bda14g01078 . 1 618 U-box Gene Family AT1G23030 55.7 1.7e-106 383.6
Bda07g00590 CCT 89 632 U-box Gene Family AT2G28830 57.8 3.6e-101 365.9
Bda02g00818 CCT 89 634 U-box Gene Family AT2G28830 58.1 9.1e-97 351.3
Bda07g00590 CCT 1 630 U-box Gene Family AT3G46510 67.8 1.7e-155 546.6
Bda02g00818 CCT 1 627 U-box Gene Family AT3G46510 64.4 1.0e-144 510.8
Bda14g00363 . 4 587 U-box Gene Family AT3G46510 59.2 1.3e-120 430.6
Bda01g01561 . 26 639 U-box Gene Family AT3G46510 51.4 1.1e-95 347.8
Bda14g00363 . 3 588 U-box Gene Family AT3G54850 67.0 1.6e-150 530.0
Bda07g00590 CCT 8 621 U-box Gene Family AT3G54850 54.9 2.4e-103 373.2
Bda01g01561 . 34 643 U-box Gene Family AT5G42340 63.6 7.3e-143 504.6
Bda06g00438 . 18 636 U-box Gene Family AT5G42340 59.1 6.7e-112 401.7
Bda01g00060 . 9 655 U-box Gene Family AT5G01830 56.2 3.0e-192 668.7
Bda07g00963 . 1 600 U-box Gene Family AT1G29340 53.1 3.2e-192 668.7
Bda03g01627 BCT 3 405 U-box Gene Family AT3G52450 55.6 5.7e-128 454.5
Bda09g01389 . 25 167 U-box Gene Family AT3G52450 51.4 8.5e-39 158.3
Bda03g01627 BCT 3 404 U-box Gene Family AT2G35930 56.0 1.0e-126 450.3
Bda05g01129 BCT 3 204 U-box Gene Family AT2G35930 53.7 3.8e-57 219.2
Bda09g01389 . 25 166 U-box Gene Family AT2G35930 50.3 4.4e-37 152.5
Bda04g00334 . 58 216 U-box Gene Family AT5G64660 60.0 2.5e-48 189.9
Bda04g00334 . 58 216 U-box Gene Family AT5G09800 59.1 3.1e-43 172.9
Bda14g01286 . 1 449 U-box Gene Family AT3G49810 71.9 6.0e-181 630.6
Bda11g01486 . 1 450 U-box Gene Family AT3G49810 70.5 1.6e-178 622.5
Bda14g01286 . 1 449 U-box Gene Family AT5G65920 67.4 7.8e-165 577.0
Bda11g01486 . 1 450 U-box Gene Family AT5G65920 66.3 3.9e-164 574.7
Bda11g00250 . 33 822 U-box Gene Family AT2G45910 50.6 1.3e-221 766.5
Bda06g00764 . 17 788 U-box Gene Family AT4G25160 51.8 1.1e-209 726.9
Bda01g01564 BCT 4 813 U-box Gene Family AT1G76390 63.7 1.0e-279 959.5
Bda11g00977 BCT 12 812 U-box Gene Family AT1G76390 60.4 2.4e-265 911.8
Bda01g01564 BCT 7 813 U-box Gene Family AT1G20780 64.0 1.0e-284 976.1
Bda11g00977 BCT 12 812 U-box Gene Family AT1G20780 60.2 2.6e-267 918.3
Bda10g00010 . 1 598 U-box Gene Family AT5G67530 76.4 2.2e-263 904.8
Bda13g00041 BCT 1 524 U-box Gene Family AT1G04510 72.4 3.9e-224 774.2
Bda11g00647 BCT 2 522 U-box Gene Family AT1G04510 72.0 8.5e-219 756.5
Bda13g00041 BCT 1 488 U-box Gene Family AT2G33340 72.7 3.0e-210 728.0
Bda11g00647 BCT 2 486 U-box Gene Family AT2G33340 72.4 4.5e-206 714.1
Bda05g00836 . 10 279 U-box Gene Family AT3G07370 67.0 2.0e-105 379.0
Bda12g00756 . 8 277 U-box Gene Family AT3G07370 61.5 4.8e-96 347.8
Bda12g00767 . 4 118 U-box Gene Family AT3G07370 61.7 2.1e-38 156.4
Bda13g01704 . 1 1018 U-box Gene Family AT5G15400 73.3 0.0e+00 1481.1
Bda04g00508 . 1 781 U-box Gene Family AT3G54790 52.0 1.6e-125 447.2
Bda04g00003 . 1 576 U-box Gene Family AT2G23140 58.7 1.5e-76 284.3
Bda14g01265 . 195 724 U-box Gene Family AT2G23140 53.5 1.7e-72 270.8
Bda09g01286 . 1 359 U-box Gene Family AT4G21350 58.4 4.8e-115 411.4
Bda01g01749 . 1 360 U-box Gene Family AT4G21350 61.0 1.1e-114 410.2
Bda12g00757 . 134 457 U-box Gene Family AT3G07360 52.6 1.3e-84 310.1
Bda10g00536 . 134 457 U-box Gene Family AT3G07360 58.2 2.6e-77 285.8
Bda14g01078 . 202 414 U-box Gene Family AT1G71020 64.5 9.9e-73 271.2
Bda14g01065 . 238 467 U-box Gene Family AT1G71020 60.2 6.0e-70 261.9
Bda14g00363 . 213 385 U-box Gene Family AT1G71020 57.4 1.2e-49 194.5
Bda07g00590 CCT 254 421 U-box Gene Family AT1G71020 57.2 1.6e-46 184.1
Bda02g00818 CCT 249 418 U-box Gene Family AT1G71020 55.6 2.1e-46 183.7
Bda14g01078 . 1 618 U-box Gene Family AT1G23030 55.7 1.7e-106 383.6
Bda07g00590 CCT 89 632 U-box Gene Family AT2G28830 57.8 3.6e-101 365.9
Bda02g00818 CCT 89 634 U-box Gene Family AT2G28830 58.1 9.1e-97 351.3
Bda07g00590 CCT 1 630 U-box Gene Family AT3G46510 67.8 1.7e-155 546.6
Bda02g00818 CCT 1 627 U-box Gene Family AT3G46510 64.4 1.0e-144 510.8
Bda14g00363 . 4 587 U-box Gene Family AT3G46510 59.2 1.3e-120 430.6
Bda01g01561 . 26 639 U-box Gene Family AT3G46510 51.4 1.1e-95 347.8
Bda14g00363 . 3 588 U-box Gene Family AT3G54850 67.0 1.6e-150 530.0
Bda07g00590 CCT 8 621 U-box Gene Family AT3G54850 54.9 2.4e-103 373.2
Bda01g01561 . 34 643 U-box Gene Family AT5G42340 63.6 7.3e-143 504.6
Bda06g00438 . 18 636 U-box Gene Family AT5G42340 59.1 6.7e-112 401.7
Bda01g00060 . 9 655 U-box Gene Family AT5G01830 56.2 3.0e-192 668.7
Bda07g00963 . 1 600 U-box Gene Family AT1G29340 53.1 3.2e-192 668.7
Bda03g01627 BCT 3 405 U-box Gene Family AT3G52450 55.6 5.7e-128 454.5
Bda09g01389 . 25 167 U-box Gene Family AT3G52450 51.4 8.5e-39 158.3
Bda03g01627 BCT 3 404 U-box Gene Family AT2G35930 56.0 1.0e-126 450.3
Bda05g01129 BCT 3 204 U-box Gene Family AT2G35930 53.7 3.8e-57 219.2
Bda09g01389 . 25 166 U-box Gene Family AT2G35930 50.3 4.4e-37 152.5
Bda04g00334 . 58 216 U-box Gene Family AT5G64660 60.0 2.5e-48 189.9
Bda04g00334 . 58 216 U-box Gene Family AT5G09800 59.1 3.1e-43 172.9
Bda14g01286 . 1 449 U-box Gene Family AT3G49810 71.9 6.0e-181 630.6
Bda11g01486 . 1 450 U-box Gene Family AT3G49810 70.5 1.6e-178 622.5
Bda14g01286 . 1 449 U-box Gene Family AT5G65920 67.4 7.8e-165 577.0
Bda11g01486 . 1 450 U-box Gene Family AT5G65920 66.3 3.9e-164 574.7
Bda11g00250 . 33 822 U-box Gene Family AT2G45910 50.6 1.3e-221 766.5
Bda06g00764 . 17 788 U-box Gene Family AT4G25160 51.8 1.1e-209 726.9
Bda01g01564 BCT 4 813 U-box Gene Family AT1G76390 63.7 1.0e-279 959.5
Bda11g00977 BCT 12 812 U-box Gene Family AT1G76390 60.4 2.4e-265 911.8
Bda01g01564 BCT 7 813 U-box Gene Family AT1G20780 64.0 1.0e-284 976.1
Bda11g00977 BCT 12 812 U-box Gene Family AT1G20780 60.2 2.6e-267 918.3
Bda10g00010 . 1 598 U-box Gene Family AT5G67530 76.4 2.2e-263 904.8
Bda13g00041 BCT 1 524 U-box Gene Family AT1G04510 72.4 3.9e-224 774.2
Bda11g00647 BCT 2 522 U-box Gene Family AT1G04510 72.0 8.5e-219 756.5
Bda13g00041 BCT 1 488 U-box Gene Family AT2G33340 72.7 3.0e-210 728.0
Bda11g00647 BCT 2 486 U-box Gene Family AT2G33340 72.4 4.5e-206 714.1
Bda05g00836 . 10 279 U-box Gene Family AT3G07370 67.0 2.0e-105 379.0
Bda12g00756 . 8 277 U-box Gene Family AT3G07370 61.5 4.8e-96 347.8
Bda12g00767 . 4 118 U-box Gene Family AT3G07370 61.7 2.1e-38 156.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004594 2 4 1 2 2 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00003 Bda_Chr04 FPKM 8.582081 9.271786 14.527942 13.715123 10.150095 10.255675 10.619098 14.929429 15.118539