Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00028 ATGCACGACGAAAAGCCCTTTAACTCTTCCGGGTCGGCAAGTGGGACTCCTGTCACACCCTCCGCTGCGAAGCGCGCGGCTGCTGCCAGACCGAAGCGCGCGAAGAAGGATGAGGAAGCCTCCCCCGCCACCGCAGCTGCCTCACCGGTCGCCGACTCAAAGTCCGAGGTTCCATCAGGAGAAGACACTGAAGGATCCCTTGACATGCAAGTGACACCAGCCAGGCAAGCAGTTGCTTTTACTCGATCTGCAGCAAAGAGAGCAACAGAGAAGAACAAGACACTTGCTCCAGATAAATCGCTTTCCAATCTGGAACTAGTATCTGGAGCCTCTGTTATTACAATAGTTGAAGATTGTAAGGAGAAGCCAGTAGTGGCTATTAAGGATGCGGAGATAATTCCTTCAGATAGATTACTTTTTGAACAGGATCCTGCATCTGGAAACACTCTGAACTCAAGAATTGAAGATTCTAAACAGAAGAAAGTAACGATTGTTGAGGATGTAGAGATAATTTCTTCAGATTCACTGCTTTCTGAACAGGAACCTGAATTTGGAGACTCTATGAAACCAGGAATTGAAGAATTTAAAAAGGGGACAGAAGTGGACGTTAAGGATGTTGAGATAATTGCTTCAAATACATTTTTTTCCCAAGGAGTATGTGAATATGAAGGTTCTATGAAATCAATTATTGAAGAAGCTAAAGAGAAGGAATCACTGGACATTAAAAATAGGGAGATGATTGAAGAGGACACTATTATGGATGATGTTGGAGAATGTGTCAAGAAGGTACACACTACAATGGAGGTAGAGCTGCCTGCTGTTGAAAATGCAGGAGACGCCAAAATAGAAGAGAGCAAGATGCAAATACAAATTACCCCCTTTGCCTGCTTTGACGAATCTTCCATTGAAGAGAAATCTACTGGTGTAGATGTTATATTGTCGTTGGATACCATGAAACCTGGTGAATTAACAGAGGAAGAGGCAATGGAAGACGATCCAGAGGAGCAAGATACTGAAGGTGTGAAGGATGATGAAGAATTAAACGTTCTATCTTCTAATGTGAAGGGAAATAACAAAGAGGACTTGCTTGGAGAAGATAGTCAAATTGCAAATGAGGAATGTTTTATAAATGTTCGAACTGAAAAGTATGTGGGGGAGGTTTACCTTGGTGAACATGGAGAAGAGGAGATTGTAGAGGAGGATCTTCAGGTGCCTGTTGAAGAAAATGAGGCATTGGAAGAAGAACATAGGGAGTTATCTGCGATGGCAAAGGAGCCAAAGATTGGAAAAGTTGACCTTGGTGAACATGGAGAGGAGAAGATTGAAGAGGAGAATCTTCAGGAGCCTGTTGAAGAAAATGAGGCAGTGGAAGAGGAACGTAGGGAGTTATCTGCGATGGCAAAGGAACGGAATATTAGAAAAGTTGACATTGGTGAACATGGATTAGAGGTGATTGAAGAGGAGGATCATCCAGAGCCTGTTGAGGAAAATGAGGCATTGGAAGATGAACGTAGGCAGTTATCTGCCATGGCAAAGGAGCGGAAGATTAGAAAAGAGCATGAAATATTTGTTGGAGGTTTGGATAAAGATGCCACTGAGGAGGACGCGAGAAAAGTTTTTGAGATAATCGGAGAGATAGTTGAAGTAAGGTTGCATAAGAATCTTACTAATAAGAATCAGGGATATGCATTTGTGACCTTTTCCAGTAAGGAGAATGCAAAACGGGCTCTAGCAGAAATTAAAAACCCTATTATTGCTGGAAAAAGATGTAGGACTGCACCTAGCGAGGACAATAACACACTATTTTTGGGTAATATCTGCAATACATGGACAAAAGAAGCTATTAAACAAAAGTTGAAGGAGTATGGTGTTGAAGGTTTTGAGAAGATAACACTTGTATCAGATGTTCAACATGAAGGGTTAAGCCGAGGATTTGCATTTGTTGAGTTTTTTTGTCACAGTGATGCCATGCTTGCATACAAGAGGCTCCAGAAACCTGATGTTATTTTTGGTCATGCTGAGAGAACTGTTAAAGTCGCTTTTGCTGCACCCTTACAGGAGCCTGACCCAGAGGTCATGGCCCAGGTTAAATCTGTATTCATCGATGGTATCCCGCCGAATTTGGGTGAAGCGCAAGTTAGAGAAAGATTAAAAGGTTATGGAGATATTGTGCGGATTTTTTTGGCACGAAATATGCCAACAGCAAAAAGGAAGGATTTTGGATTTGTTGATTTTTCTACCCACAAAGATGCTGTTGCTTGTGTTCAAGGTTTAAATAATACAGAATTTGGTGATGGTAATTTAAAGACAAAAATTAAGGCGAGGCTTTCAAATCCATTGCCAAAAACTCAGGCTGTGAAAGGTGGAATGTGTGGAGGATTTCGAATTGGTCATGGTAGTGGTGGACCATTTCCAAAATTTGGGAAGAGTTTTGAACGAAGTGGAAATTCATTTAATCATCCACACTTCATGCGTGGGCGTGGTTTCAATCAAGGTGGACAAGTTCAAAGGGGCAGAATAGGTTTTCAAAACAACTTTGAATATGAGAATCCTTATCCGGAGTTCAACAGAAGACAAGATATAGGTGGGAGAAGGGGATCAATTAGAGGAGGTCATTTTAGCTCTGTGAGAGGTGGTGCAGTGGCTGCCTCATCAAGACCTCTCCTTGATGGGTGGCGTGATCCTCCTGGCAGGGAATATGGATTTGAAACCCCTCTTAGGCAGCAACCATATACGTCAGAGGCACACCATGACAGATCATATTTGAGACCCCATTTTGATTCTCAATATAATTACATTGACAATGTTCATGGAACAAAACGTCCATATTCTATGATAGAGCATGGTCCTGATTACATAGGACCTGGTAGAGTTCGCCAGCGATTTGATTATTCTAATCCAGTAGGTCCATTTCAAGGAAACCATTACCGAGATACTTATGGATCTGGTAGCAGCAGTCAGTTCCCTAATAATATTTATGGCCCTGATTATGGTGGCGGTCCGCGATCATCATTCTACCGAGGTGGTCACTCATTTGGAAGAGGTTATTATTACTGA 3057 42.17 MHDEKPFNSSGSASGTPVTPSAAKRAAAARPKRAKKDEEASPATAAASPVADSKSEVPSGEDTEGSLDMQVTPARQAVAFTRSAAKRATEKNKTLAPDKSLSNLELVSGASVITIVEDCKEKPVVAIKDAEIIPSDRLLFEQDPASGNTLNSRIEDSKQKKVTIVEDVEIISSDSLLSEQEPEFGDSMKPGIEEFKKGTEVDVKDVEIIASNTFFSQGVCEYEGSMKSIIEEAKEKESLDIKNREMIEEDTIMDDVGECVKKVHTTMEVELPAVENAGDAKIEESKMQIQITPFACFDESSIEEKSTGVDVILSLDTMKPGELTEEEAMEDDPEEQDTEGVKDDEELNVLSSNVKGNNKEDLLGEDSQIANEECFINVRTEKYVGEVYLGEHGEEEIVEEDLQVPVEENEALEEEHRELSAMAKEPKIGKVDLGEHGEEKIEEENLQEPVEENEAVEEERRELSAMAKERNIRKVDIGEHGLEVIEEEDHPEPVEENEALEDERRQLSAMAKERKIRKEHEIFVGGLDKDATEEDARKVFEIIGEIVEVRLHKNLTNKNQGYAFVTFSSKENAKRALAEIKNPIIAGKRCRTAPSEDNNTLFLGNICNTWTKEAIKQKLKEYGVEGFEKITLVSDVQHEGLSRGFAFVEFFCHSDAMLAYKRLQKPDVIFGHAERTVKVAFAAPLQEPDPEVMAQVKSVFIDGIPPNLGEAQVRERLKGYGDIVRIFLARNMPTAKRKDFGFVDFSTHKDAVACVQGLNNTEFGDGNLKTKIKARLSNPLPKTQAVKGGMCGGFRIGHGSGGPFPKFGKSFERSGNSFNHPHFMRGRGFNQGGQVQRGRIGFQNNFEYENPYPEFNRRQDIGGRRGSIRGGHFSSVRGGAVAASSRPLLDGWRDPPGREYGFETPLRQQPYTSEAHHDRSYLRPHFDSQYNYIDNVHGTKRPYSMIEHGPDYIGPGRVRQRFDYSNPVGPFQGNHYRDTYGSGSSSQFPNNIYGPDYGGGPRSSFYRGGHSFGRGYYY 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 440430 444682 + Bda018799.1 Bda04g00028 5050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00028 1018 Gene3D - 685 872 IPR012677 -
Bda04g00028 1018 Gene3D - 599 683 IPR012677 -
Bda04g00028 1018 MobiDBLite consensus disorder prediction 1 74 - -
Bda04g00028 1018 Gene3D - 429 598 IPR012677 -
Bda04g00028 1018 CDD RRM_SF 699 769 - -
Bda04g00028 1018 MobiDBLite consensus disorder prediction 887 918 - -
Bda04g00028 1018 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 599 684 IPR000504 GO:0003723
Bda04g00028 1018 Coils Coil 497 517 - -
Bda04g00028 1018 CDD RRM_SF 522 591 - -
Bda04g00028 1018 CDD RRM_SF 601 679 - -
Bda04g00028 1018 SMART rrm1_1 698 771 IPR000504 GO:0003723
Bda04g00028 1018 SMART rrm1_1 600 680 IPR000504 GO:0003723
Bda04g00028 1018 SMART rrm1_1 521 593 IPR000504 GO:0003723
Bda04g00028 1018 SUPERFAMILY RNA-binding domain, RBD 596 771 IPR035979 GO:0003676
Bda04g00028 1018 PANTHER NUCLEOLIN-LIKE ISOFORM X1 209 1011 - -
Bda04g00028 1018 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 697 779 IPR000504 GO:0003723
Bda04g00028 1018 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 520 597 IPR000504 GO:0003723
Bda04g00028 1018 SUPERFAMILY RNA-binding domain, RBD 513 595 IPR035979 GO:0003676
Bda04g00028 1018 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 601 669 IPR000504 GO:0003723
Bda04g00028 1018 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 699 767 IPR000504 GO:0003723
Bda04g00028 1018 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 522 590 IPR000504 GO:0003723
Bda04g00028 1018 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 209 1011 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00028 - - - qsu:111996643 709.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00028 Bda-Chr4:440430 Bda08g00044 Bda-Chr8:338505 5.56E-106 dispersed
Bda04g00028 Bda-Chr4:440430 Bda15g00040 Bda-Chr15:1849466 1.05E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1092 . . Bda04g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1674 Cone9ag1595 . . . . Blo05g00824 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017281 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00028 Bda_Chr04 FPKM 3.062312 3.803144 4.106347 4.350893 5.859331 6.531716 7.522093 7.33519 7.211399