Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00029 ATGGCTCTGCAAGAGAACATGCTATCCGGTGATGTCCCTGAAGGATTCAGTAATTTGATGAGTTTAAGGTATTTGAACCTCTCTTCAAATGGATTTTCTGGTCAAATTCCAGCTAATTACGGATTTCTCCAATCACTAACAGTTCTCTCGATGTTCGGCAATCATATTTCCAGGATGATTCCACCAGAGATAGGCAATTGCTCAAGTCTTCAAGTTTTGGAGGCTCGATTCAATTCCTTGACCGGAAACATTCCGGTCGATCTTTCGAAGCTAACTCGTTTAAGCAAGCTCGATTTGGGTCAGAATAATTTGGCAGGGAGAATTCCTGAGGAAATTTCCAAGTGTTTATCATTAACCACTCTGCTGCTAGACTCAAACCATCTATCAGGCACCATACCGAGCTTGATGTCGGAGCTATCAAACCTCACAAGCTTAAACCTCGCTTCGAACAACTTAAGTGGGGAAATTCCGGCTAATATTAGCTCTATCACTGGATTGGTGTACTTTAACGTCTCGAATAATGATCTCGAAGGCGAGATTCCTGCTCCTTTAGGTTCTAGATTCGATGATTCGCTGTTATTTTCTGGGAATTTAAAGTTATGCGGGAAGCCACTGGATCGGAAATGCGAGAATGTAAATGAGAAAGAGAGAAGAAAGAAACTAATTTTGCTGATTGCATTGGCAGCCAGTGGAGCTATATTACTCTCAGTGTGTTGTTGCTTTTACATATTTAGTCTCTTAATGTGGTGGAAAAGGCTGAAAGAGGGGGTTTCCGGCGAGAAGAAGCGGAGTCCGGGGAGGACCAATGCCGGAGCGAGCAGCGGGCGGGGAAGCTCGGATAGCGATGGGCCGAAAGTTATGATATTCAACAACAAAATCACTCTTTCTGACACAGTTGAAGCAACAAGGCAATTTGATGAAGAGAATGTTCTTAGTCGAAATCGGCACGGTTTAGTTTTCAAAGCCAGCTACAATGATGGAATGGTGCTCTCGATTCGCCGCCTCCCGAACGGATTGATAAACGAATCCGGATTCAGAAAAGAAGCCGAATTATTGGGTAAAATTAAGCATCGAAATCTGACTGTTCTTCGCGGCTACTATACAGGGCCAGATTTGAAACTTCTCGTATACGATTATATGCCAAATGGAAACCTCGCAACTCTTCTCCAAGAAGCATCCCACCAAGATGGACAATGTTTTGAATTGGCCAATGCGACATCTCATTGCCCTTGGAATTGCTAG 1242 43.56 MALQENMLSGDVPEGFSNLMSLRYLNLSSNGFSGQIPANYGFLQSLTVLSMFGNHISRMIPPEIGNCSSLQVLEARFNSLTGNIPVDLSKLTRLSKLDLGQNNLAGRIPEEISKCLSLTTLLLDSNHLSGTIPSLMSELSNLTSLNLASNNLSGEIPANISSITGLVYFNVSNNDLEGEIPAPLGSRFDDSLLFSGNLKLCGKPLDRKCENVNEKERRKKLILLIALAASGAILLSVCCCFYIFSLLMWWKRLKEGVSGEKKRSPGRTNAGASSGRGSSDSDGPKVMIFNNKITLSDTVEATRQFDEENVLSRNRHGLVFKASYNDGMVLSIRRLPNGLINESGFRKEAELLGKIKHRNLTVLRGYYTGPDLKLLVYDYMPNGNLATLLQEASHQDGQCFELANATSHCPWNC 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 447626 448867 - Bda018798.2 Bda04g00029 5051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00029 413 SUPERFAMILY L domain-like 3 205 - -
Bda04g00029 413 MobiDBLite consensus disorder prediction 259 285 - -
Bda04g00029 413 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 399 - -
Bda04g00029 413 PANTHER LRR RECEPTOR-LIKE KINASE 1 399 - -
Bda04g00029 413 Gene3D Phosphorylase Kinase; domain 1 274 379 - -
Bda04g00029 413 Gene3D Ribonuclease Inhibitor 1 218 IPR032675 -
Bda04g00029 413 SMART LRR_typ_2 139 163 IPR003591 -
Bda04g00029 413 SMART LRR_typ_2 43 67 IPR003591 -
Bda04g00029 413 SMART LRR_typ_2 91 115 IPR003591 -
Bda04g00029 413 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Bda04g00029 413 Pfam Protein tyrosine and serine/threonine kinase 316 395 IPR001245 GO:0004672|GO:0006468
Bda04g00029 413 ProSiteProfiles Protein kinase domain profile. 305 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00029 413 SUPERFAMILY Protein kinase-like (PK-like) 285 391 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00029 Bda-Chr4:447626 Bda14g00224 Bda-Chr14:1519843 6.80E-11 dispersed
Bda10g00176 Bda-Chr10:5499092 Bda04g00029 Bda-Chr4:447626 8.68E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69580 PF07714 PK_Tyr_Ser-Thr 2.50E-05 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00029 - - vvi:100854147 540.036