Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00030 ATGATTGTTTCTCGGAATACTCTGAACCTTTTCCGGCTAGCTGTCTTGACGGCGAAGCCGCTGAACCAGGTCGAAACCAGGCTAGGTCCGGCGACGGTCCCGCGGCCGCCTTTTAAGACGCCGGTTCCGGCCAAAGCCAGAAGCAAGCGCGCGAGAACCGGTGGTCGAGTTTGGTCTCTTGGGTCTCCGCCGCTGGCGGAGTCATCTTCAAGCTCTTCGACATCTTCGTTTTCCCCTCCATCTCCCACAACCCCGCACCTCTTTCACAAGGACGACACAGCTGAACTTTTATATCCGCCGGAGAAGAAGCCCAAGAAGAAAGAAAACGGAGAGGGGAGCCAGGTTCCCCGGCGGTGCAGCCATTGCGGCGTGCAGAAAACCCCACAGTGGAGAACCGGTCCGCTCGGGGCGAAAACACTCTGCAACGCATGTGGGGTGCGCTACAAATCCGGTCGACTCTTGCCGGAATACAGACCGGCCTGTAGCCCCACTTTTTCGAACGAAATACACTCTAACCACCACCGGAAAGTACTGGAAATGCGTCGGAAGAAGGAGGTTGTGGTAGTCAGAGCAGCACCAAACTCGGGTTCGACCCCTCCGGCCGTGTCCAGTTTTTGA 618 57.28 MIVSRNTLNLFRLAVLTAKPLNQVETRLGPATVPRPPFKTPVPAKARSKRARTGGRVWSLGSPPLAESSSSSSTSSFSPPSPTTPHLFHKDDTAELLYPPEKKPKKKENGEGSQVPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSNEIHSNHHRKVLEMRRKKEVVVVRAAPNSGSTPPAVSSF 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 483324 483941 - Bda018797.1 Bda04g00030 5052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00030 205 MobiDBLite consensus disorder prediction 88 114 - -
Bda04g00030 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 115 176 - -
Bda04g00030 205 MobiDBLite consensus disorder prediction 27 120 - -
Bda04g00030 205 ProSitePatterns GATA-type zinc finger domain. 119 144 IPR000679 GO:0006355|GO:0043565
Bda04g00030 205 MobiDBLite consensus disorder prediction 63 83 - -
Bda04g00030 205 Gene3D - 109 187 IPR013088 GO:0006355|GO:0008270
Bda04g00030 205 PANTHER GATA TRANSCRIPTION FACTOR 32 186 - -
Bda04g00030 205 Pfam GATA zinc finger 119 153 IPR000679 GO:0006355|GO:0043565
Bda04g00030 205 CDD ZnF_GATA 118 167 IPR000679 GO:0006355|GO:0043565
Bda04g00030 205 SMART GATA_3 113 167 IPR000679 GO:0006355|GO:0043565
Bda04g00030 205 ProSiteProfiles GATA-type zinc finger domain profile. 113 149 IPR000679 GO:0006355|GO:0043565
Bda04g00030 205 PANTHER GATA TRANSCRIPTION FACTOR 32 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00030 - - - pdul:117635895 215.312
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda04g00030 Bda11g01846 CCT
Bda04g00030 Bda11g01846 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00030 Bda-Chr4:483324 Bda14g00992 Bda-Chr14:8132974 9.66E-55 dispersed
Bda09g00082 Bda-Chr9:1503115 Bda04g00030 Bda-Chr4:483324 9.69E-08 transposed
Bda08g00604 Bda-Chr8:6176492 Bda04g00030 Bda-Chr4:483324 1.23E-07 transposed
Bda11g01846 Bda-Chr11:53656847 Bda04g00030 Bda-Chr4:483324 9.83E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda03g00433 . 75 291 C2C2-Gata Transcription Factor Family AT5G25830 51.4 4.8e-58 221.9
Bda09g00660 . 76 275 C2C2-Gata Transcription Factor Family AT5G25830 51.1 4.0e-49 192.2
Bda09g00212 . 74 275 C2C2-Gata Transcription Factor Family AT5G25830 51.1 9.0e-49 191.0
Bda03g01053 BCT 1 240 C2C2-Gata Transcription Factor Family AT3G60530 51.4 3.7e-52 201.8
Bda04g00030 CCT,ECH 38 205 C2C2-Gata Transcription Factor Family AT5G66320 58.2 5.8e-43 171.8
Bda14g00992 . 2 173 C2C2-Gata Transcription Factor Family AT5G66320 55.7 4.1e-41 165.6
Bda14g00992 . 8 173 C2C2-Gata Transcription Factor Family AT3G51080 60.5 2.9e-41 166.0
Bda04g00030 CCT,ECH 38 185 C2C2-Gata Transcription Factor Family AT3G51080 63.9 7.2e-40 161.4
Bda06g00001 . 1 328 C2C2-Gata Transcription Factor Family AT4G17570 57.2 3.9e-91 332.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15776 PF00320 GATA 2.30E-16 CL0167 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00030 Bda_Chr04 FPKM 2.54563 3.875783 0.0 1.853871 4.815619 3.082825 0.0 0.0 1.668984