Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00030 ATGATTGTTTCTCGGAATACTCTGAACCTTTTCCGGCTAGCTGTCTTGACGGCGAAGCCGCTGAACCAGGTCGAAACCAGGCTAGGTCCGGCGACGGTCCCGCGGCCGCCTTTTAAGACGCCGGTTCCGGCCAAAGCCAGAAGCAAGCGCGCGAGAACCGGTGGTCGAGTTTGGTCTCTTGGGTCTCCGCCGCTGGCGGAGTCATCTTCAAGCTCTTCGACATCTTCGTTTTCCCCTCCATCTCCCACAACCCCGCACCTCTTTCACAAGGACGACACAGCTGAACTTTTATATCCGCCGGAGAAGAAGCCCAAGAAGAAAGAAAACGGAGAGGGGAGCCAGGTTCCCCGGCGGTGCAGCCATTGCGGCGTGCAGAAAACCCCACAGTGGAGAACCGGTCCGCTCGGGGCGAAAACACTCTGCAACGCATGTGGGGTGCGCTACAAATCCGGTCGACTCTTGCCGGAATACAGACCGGCCTGTAGCCCCACTTTTTCGAACGAAATACACTCTAACCACCACCGGAAAGTACTGGAAATGCGTCGGAAGAAGGAGGTTGTGGTAGTCAGAGCAGCACCAAACTCGGGTTCGACCCCTCCGGCCGTGTCCAGTTTTTGA 618 57.28 MIVSRNTLNLFRLAVLTAKPLNQVETRLGPATVPRPPFKTPVPAKARSKRARTGGRVWSLGSPPLAESSSSSSTSSFSPPSPTTPHLFHKDDTAELLYPPEKKPKKKENGEGSQVPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSNEIHSNHHRKVLEMRRKKEVVVVRAAPNSGSTPPAVSSF 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 483324 483941 - Bda018797.1 Bda04g00030 5052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00030 205 MobiDBLite consensus disorder prediction 88 114 - -
Bda04g00030 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 115 176 - -
Bda04g00030 205 MobiDBLite consensus disorder prediction 27 120 - -
Bda04g00030 205 ProSitePatterns GATA-type zinc finger domain. 119 144 IPR000679 GO:0006355|GO:0043565
Bda04g00030 205 MobiDBLite consensus disorder prediction 63 83 - -
Bda04g00030 205 Gene3D - 109 187 IPR013088 GO:0006355|GO:0008270
Bda04g00030 205 PANTHER GATA TRANSCRIPTION FACTOR 32 186 - -
Bda04g00030 205 Pfam GATA zinc finger 119 153 IPR000679 GO:0006355|GO:0043565
Bda04g00030 205 CDD ZnF_GATA 118 167 IPR000679 GO:0006355|GO:0043565
Bda04g00030 205 SMART GATA_3 113 167 IPR000679 GO:0006355|GO:0043565
Bda04g00030 205 ProSiteProfiles GATA-type zinc finger domain profile. 113 149 IPR000679 GO:0006355|GO:0043565
Bda04g00030 205 PANTHER GATA TRANSCRIPTION FACTOR 32 186 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00030 Bda11g01846 CCT
Bda04g00030 Bda11g01846 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00030 Bda-Chr4:483324 Bda14g00992 Bda-Chr14:8132974 9.66E-55 dispersed
Bda09g00082 Bda-Chr9:1503115 Bda04g00030 Bda-Chr4:483324 9.69E-08 transposed
Bda08g00604 Bda-Chr8:6176492 Bda04g00030 Bda-Chr4:483324 1.23E-07 transposed
Bda11g01846 Bda-Chr11:53656847 Bda04g00030 Bda-Chr4:483324 9.83E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15776 PF00320 GATA 2.30E-16 CL0167 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00030 - - pdul:117635895 215.312