Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00031 ATGGCGTCGGTTGCTCCAGTTTCTTCATGGATCCCCGAAGATGATATTCTTTTGAAGAACGCTGTCGAGGCAGGAGCTTCATTAGAAGCACTTGCTAAAGGTGCTGTGCATTTCTCTCGGAAATTTACGGTTCGAGAACTTCAAGATCGTTGGCGTTCTCTCTTGTATGACCCAGTTATTTCAGCTGAAGCTTCAGGTCGTATGATTGAGTTTGAACTATATGCTCCTAATGATTTGTCCAAGAGCCACCGATTAAATAACTCTAGAGAAATCACGGCAAAAAGAAAGCCAGAAAGCATTCATAGCCTGTATTATAGAATGAGGAAAAGAATGTATAATCAAGCTGTTAATCCTTTCGATCTAAGTTTTCTTGGTTCGCCAAACTATACTGCTTGCATTGGAAATGGAGGTGATAGTGAAAGGGTTGGAATGGATGATGATAATAATTTAATTGATTATGGGAATTGTATGGGGCCACATCCTCATGGCTTTCCAGATATTCCTGTGTTGAAAAGGAGGGAAGACGTTTCAAAAGCTGGTTGGGAAAGTGATCAGGATGTCCAAGAGATTCAAGGGGGAGTTCAGATTGCAGTGGAAGCAATTGGTTCATCAGACATTTTAGGTTATGATATTTCTGATCATCCTGATTCGCTTTTGAACATTCCAAATGAAGATGAGATTCTATTTATGGAGTTTGATGCCAAAGGTGAGATGGAAGAGGCTGTTGATTCACTTTTACTGAACTCTCCGACCGTTTACTCAAAAGATACATCGGACGCTGATGAACATCAAGCCTTAATTTCTAACAAAGCCCATCCTCTTCCTGAAGATTTAAGCACTCTGGTGTTAGTAGATATAACAGATTTGCCGCCACATTCTGTTCATGGCAGTCATGAAACACTTTGTCATCCTGATGATAATAGGCAATCCTTGACATTTGCACCATCATCCCATTCTCCTCGTAATCAAGGAGAAATGAATTGTATATTGAACATCGAGGACCCGGAAATCCCATGCAATGATGATATGTTTCCTCCCAAAACTATCAGACCTAGTTTTATAGACGACGCAGATTTATTTTCTTCATCTGTTCTTCCAAAAAATCATGAACTAGAAATGACTCTGAAGAGAGAAGACAATCCTAAAAAGTTGGGCCTCGTTGCTAATATTCTAGAATCTGATATTTTATCAAAATCAAGCCCAAATGATCGACCATTCAATCATGACGTAAAAAAAGAAAATCGTGATGGTTACTGTCTTTCTGCTGTGGCCAGACATGCTAACAGTTTTCCTTCCAGTCCTAAGACTTGCGTGGTAGAGCATGGAACTTCAAAGAGTGCCACTTCGAATGCCCTAAAAGAAGAGGATGGTCAATCTGCAGTTGGGGAACAAGTAACTCTGCTTGTTGACCCAGGATCTTCAAGAGCAGCAGTTGGAGAATCAGAAGCAAATACGTCAACACTAGATCTTGAAGAACTTGATACGGATGATAATATTCCTTCCTTTTCTGACATTGAAGCTATGATACTTGAAATGGATTTATGGCCAAATGATCATGAGTTATATGCCAACAAAGAAGTCTTAAGATATCAGCATGAGGATACTAAAAGGAAAATCATGAGGCTCGAACAATGTGCTAGATCAGCCACACAAAGAACCATAGCATCGAAGGGTGCATTTGCCATCCTGTATGGCCGTCATGTGAAGCATTATATCAAGAAAGCAGAGGTCATGCTTGGTAGATCGACAAATGACTCTAAAGTTGACATTGACTTGAGAAGAGAAGGGCGTGCCAACCAAATATCAAGGCGCCAGGCTGTCATACGGATGCAAAAAGATGGTTCTTTTGTTCTAAAAAACCTTGGCAAGAATCCCGTCTTTATAAATGGAAAAGAAGTTGGTACTGGACAGCTCCTTAGTCTTAGTTCCAATAGCTTGATCGAGCTTCGGGAAATAGCTCTTGTTTTTGAAACCAATCCGAATTCTGTGAGGCAGTATCTTACGAAATTAACAAGGAACAAACGAAGCAATTAA 2034 40.17 MASVAPVSSWIPEDDILLKNAVEAGASLEALAKGAVHFSRKFTVRELQDRWRSLLYDPVISAEASGRMIEFELYAPNDLSKSHRLNNSREITAKRKPESIHSLYYRMRKRMYNQAVNPFDLSFLGSPNYTACIGNGGDSERVGMDDDNNLIDYGNCMGPHPHGFPDIPVLKRREDVSKAGWESDQDVQEIQGGVQIAVEAIGSSDILGYDISDHPDSLLNIPNEDEILFMEFDAKGEMEEAVDSLLLNSPTVYSKDTSDADEHQALISNKAHPLPEDLSTLVLVDITDLPPHSVHGSHETLCHPDDNRQSLTFAPSSHSPRNQGEMNCILNIEDPEIPCNDDMFPPKTIRPSFIDDADLFSSSVLPKNHELEMTLKREDNPKKLGLVANILESDILSKSSPNDRPFNHDVKKENRDGYCLSAVARHANSFPSSPKTCVVEHGTSKSATSNALKEEDGQSAVGEQVTLLVDPGSSRAAVGESEANTSTLDLEELDTDDNIPSFSDIEAMILEMDLWPNDHELYANKEVLRYQHEDTKRKIMRLEQCARSATQRTIASKGAFAILYGRHVKHYIKKAEVMLGRSTNDSKVDIDLRREGRANQISRRQAVIRMQKDGSFVLKNLGKNPVFINGKEVGTGQLLSLSSNSLIELREIALVFETNPNSVRQYLTKLTRNKRSN 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 490720 501879 - Bda018796.1 Bda04g00031 5053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00031 677 CDD FHA 573 657 IPR000253 GO:0005515
Bda04g00031 677 Gene3D - 523 669 - -
Bda04g00031 677 PANTHER FHA DOMAIN PROTEIN 202 676 - -
Bda04g00031 677 SMART FHA_2 576 633 IPR000253 GO:0005515
Bda04g00031 677 PANTHER MICROSPHERULE PROTEIN 1 1 131 IPR037912 GO:0002151|GO:0031011|GO:0071339
Bda04g00031 677 SUPERFAMILY SMAD/FHA domain 565 658 IPR008984 GO:0005515
Bda04g00031 677 ProSiteProfiles Forkhead-associated (FHA) domain profile. 577 633 IPR000253 GO:0005515
Bda04g00031 677 PANTHER MICROSPHERULE PROTEIN 1 202 676 IPR037912 GO:0002151|GO:0031011|GO:0071339
Bda04g00031 677 Pfam FHA domain 578 649 IPR000253 GO:0005515
Bda04g00031 677 Pfam N-terminal region of micro-spherule protein 10 68 IPR025999 -
Bda04g00031 677 PANTHER FHA DOMAIN PROTEIN 1 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00031 - - - qsu:112033589 471.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00507 Bda-Chr1:32060858 Bda04g00031 Bda-Chr4:490720 6.68E-42 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1068 . . Bda04g00031 . . . Bma09g00099 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1662 Cone9ag1585 . . . . Blo05g00819 . . . . Bpe06g00029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001875 2 6 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 11 13 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00031 Bda_Chr04 FPKM 1.415345 2.403108 4.272122 3.412832 0.0 0.0 0.0 0.0 0.0