Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00043 ATGGCGATTTTGGAGGATTCGGTCATTAAGTCCAAACTTTCTCCGTCTAATTCGTATTCAGCTGTGGTCCTTGGTGGTACTTTTGATCGATTGCACGACGGCCATCGCCTTTTCCTCAAGGCGGCTGCAGAGCTGGCCAGGGATCGCTTAGTTGTTGGAGTTTGCGACGGTCCTATGTTGACGAACAAAAAGTTCTCAGAATTGATACAACCCATCGAGGACAGAATACATAATGTTGAAAATTACATCAAGTCCATAAAGCCAGGGCTGCAAGTACATGCTGAACCTATCATAGATCCTTATGGACCATCAATCACTGATGAAAATTTGGAGGCAATCGTTGTCAGCAAAGAGACTTTACCAGGAGGAGTTTCGGTTAATAAAAAGAGGGCTGATAAAGGTTTTCCACTGCTAAAGATTGAAGTGGTCGATCTATTATCTGAAGAATCAAGCGGAGGGAAGCTGAGTTCAACAACATTACGGATGCTTGAGGCTGAGAAATCAAACAAGCAACAACAATAG 522 43.49 MAILEDSVIKSKLSPSNSYSAVVLGGTFDRLHDGHRLFLKAAAELARDRLVVGVCDGPMLTNKKFSELIQPIEDRIHNVENYIKSIKPGLQVHAEPIIDPYGPSITDENLEAIVVSKETLPGGVSVNKKRADKGFPLLKIEVVDLLSEESSGGKLSSTTLRMLEAEKSNKQQQ 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 745507 747851 + Bda018780.1 Bda04g00043 5065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00043 173 PANTHER DEPHOSPHO-COA KINASE-RELATED 1 172 - -
Bda04g00043 173 TIGRFAM cyt_tran_rel: cytidyltransferase-like domain 22 86 IPR004821 GO:0003824|GO:0009058
Bda04g00043 173 Pfam Cytidylyltransferase-like 24 93 IPR004821 GO:0003824|GO:0009058
Bda04g00043 173 SUPERFAMILY Nucleotidylyl transferase 21 162 - -
Bda04g00043 173 MobiDBLite consensus disorder prediction 151 173 - -
Bda04g00043 173 PANTHER PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE-LIKE ISOFORM X1 1 172 - -
Bda04g00043 173 Gene3D HUPs 21 171 IPR014729 -
Bda04g00043 173 CDD PPAT_CoAS 22 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00043 K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] K02318 pvy:116129039 264.233
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g991 . . Bda04g00043 . . . Bma09g00081 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1633 . . . . . Blo05g00800 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013511 1 4 1 1 0 0 0 0 0 1 0 0 0 1 1 1 0 1 1 0 1 1 1 0 3 1 1 0 0 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00043 Bda_Chr04 FPKM 6.453125 13.287584 10.977458 9.63172 8.998638 7.4815 12.622048 26.10128 28.423906