Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00047 ATGGCTTTGATAGAACTGAACCTTGTACATGTGTCATTGGCTCTTATGACTCTCTTGGTGATATTTGAGACAAGCGCTTCAGATACTATGTCAAATGAGACGAATTTGGGAGGAACAGTTGCTTACCAGGAAAACAAAAAGGCAACATGCCCAGCTGATTTTTTTATCAGCTCAGACAAGAAAAATTGTTTTGGTTATACAAGTAATCCCAGGTCATGGAATGACTCAGAGACTCAATGTGAAAATTATGGTGGGCATTTAGCGGCATTGACATCAGTACAAGAGCTAAACTTTGCACGGAATATTTGTAGTAAGGCTGCAAGTGGCTGCTGGGTTGGAGGCAAAACTGTCAACTCTGCTGATGGTCTGCTTTGGAAGTGGTCAGATAGTACTTATCAGTGGAATGAGTCCATTTTTCCTGGTTCTACCTCAATATCCAATTGCTCCATGTCTTGCCATGTCAATAATACTGCTGAATTATGTGCATTAATTACTGATAAACCAACTCTCAGTGGGGAAAGATGCAACAGCACCCACCCTTCTATTTGCATGATTACGATTGAGGATAAATGCTATCACATGCATTGCCATGGGGAATATCTTATAATTCTTATAGTAGTAAGTGGGTTGATATTGTGCACAGCATTAGCTGTTGTTGTCTGGCTACTTGTCTACAAAAGGAGCAAGAAGCGTAAAAGATCCCGTAAATTATCTAATTCAGCAGCTCCTTCTTGGAAAGTCTTTGCCAAAGAAGAACTAAAGTCCATTACCAAGAACTTCAGTGAGGGAAGTCGTCTTCTTGGAGATGCTAAAACAGGTGGCACATACATTGGGCTTCTGCATGATGGTTCCAGAGTTGCAGTGAAGAGATTAAAGAGGTCCAATTTTCAAAGAAAAAAGGAGTTCTATTCTGAAATTGGAAGGGTGGCGAGGCTTCACCATCAAAATCTTGTTGCCGTGAAAGGATGTTGCTATGATCATGGCGACCGTTATATAGTTTACGAATTTATTGTGAACGGTCCATTAGATAGATGGCTACACCACATACCGAGGGGCGGAAGAAGCTTAGATTGGGCCATGAGAGTGAAAATCGCGACTACTCTTGCCCAAGGGATTGCATTCCTTCATGACAAGGTTAAACCTCATGTGGTGCATCGAGATATCCGAGCCAGCAACGTTCTTTTGGACGAAGAATTTGTAGCACATCTAATGGGGGTGGGTCTTTCTAAGTTTGTGCCCTATGAAGCAATACATGAAAGGACAATGATGGCAGGCGGCACATATGGATATCTTGCTCCTGAATTTGTCTATAGAAACGAGCTAACGACTAAGAGCGATGTCTATAGTTTTGGGGTGCTGCTTCTCGAAATTGTGAGTGGAAGGAGGCCAGCTCAGGCCGTCGATTCAGTGGGGTGGCAGAGTATATTTGAGTGGTCCACACCGCTAGTGCAGGCTCATAGGTACCTGGACCTGTTGGATCCTCATATCACTGCCTTGTCCGGTGATATTCCTGACTCTAGCGTTGTTCAGAAGGTGGTTGACCTCGTTTATGCTTGCACACAACATGTTCCCTCTATGCGGCCTAGAATGTCTCATGTTGTGCATCAGCTACAACAGTTGGTTCAGCCTCCTACTTCAAAGTAA 1644 43.31 MALIELNLVHVSLALMTLLVIFETSASDTMSNETNLGGTVAYQENKKATCPADFFISSDKKNCFGYTSNPRSWNDSETQCENYGGHLAALTSVQELNFARNICSKAASGCWVGGKTVNSADGLLWKWSDSTYQWNESIFPGSTSISNCSMSCHVNNTAELCALITDKPTLSGERCNSTHPSICMITIEDKCYHMHCHGEYLIILIVVSGLILCTALAVVVWLLVYKRSKKRKRSRKLSNSAAPSWKVFAKEELKSITKNFSEGSRLLGDAKTGGTYIGLLHDGSRVAVKRLKRSNFQRKKEFYSEIGRVARLHHQNLVAVKGCCYDHGDRYIVYEFIVNGPLDRWLHHIPRGGRSLDWAMRVKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFVAHLMGVGLSKFVPYEAIHERTMMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWSTPLVQAHRYLDLLDPHITALSGDIPDSSVVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLVQPPTSK 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 764067 766222 - Bda018776.1 Bda04g00047 5069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00047 547 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 542 - -
Bda04g00047 547 Pfam Lectin C-type domain 70 184 IPR001304 -
Bda04g00047 547 Gene3D Phosphorylase Kinase; domain 1 222 336 - -
Bda04g00047 547 Gene3D - 21 189 IPR016186 -
Bda04g00047 547 Gene3D Transferase(Phosphotransferase) domain 1 337 542 - -
Bda04g00047 547 ProSiteProfiles C-type lectin domain profile. 59 184 IPR001304 -
Bda04g00047 547 PANTHER - 5 542 - -
Bda04g00047 547 ProSitePatterns Tyrosine protein kinases specific active-site signature. 383 395 IPR008266 GO:0004672|GO:0006468
Bda04g00047 547 Pfam Protein tyrosine and serine/threonine kinase 267 537 IPR001245 GO:0004672|GO:0006468
Bda04g00047 547 ProSiteProfiles Protein kinase domain profile. 261 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda04g00047 547 SUPERFAMILY Protein kinase-like (PK-like) 237 537 IPR011009 -
Bda04g00047 547 CDD CLECT 62 183 - -
Bda04g00047 547 SMART CLECT_2 50 184 IPR001304 -
Bda04g00047 547 SMART tyrkin_6 260 537 IPR020635 GO:0004713|GO:0006468
Bda04g00047 547 SUPERFAMILY C-type lectin-like 39 186 IPR016187 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00047 Bda-Chr4:764067 Bda07g00957 Bda-Chr7:11082695 1.08E-60 dispersed
Bda04g00047 Bda-Chr4:764067 Bda10g01025 Bda-Chr10:44365833 3.36E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69581 PF07714 PK_Tyr_Ser-Thr 1.60E-39 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00047 - - jre:109001403 792.341