Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00056 ATGAGATATAGGGTTTCGTATTTGATGGATGAGATCTGGGAGCGAGCCGTTGAGACTGCGCTAGACGGCCAAACTGACCTTGCCTCGGCCCGTGCCCTGACCTTAGACGGTGCTGTGAAGTGTGCTCAGGGTCGGTTGCCTCCACCGACTCTTTTGGAGAAGTTCCCTAATCTTCAACACCTTTCGATTGCTAATATTGGCGTCTCATCGCTAGAGCAGTTTCCTCATCTTCCTAACCTACAGAAACTTATTCTATCTGATAATCGGATAGCTGGTGGCCTCGAATTTCTTGTTGAAGCAGGGCTTGATTCTCTCCGAGACTTAGACCTCTCGAACAATAGGATTCAGTATATTGAAGATCTTGAGCCACTTGCACAGCTAAAGCTTGTGTCACTTGATCTCTACGAGAGTCCAGTTACGAGAGTGAAGGATTATCGATCTAGGGTTTTTGGATTGATTAAATCGCTAAAATATTTGGATAAGATGGATTCTGAGGAGAATGAGCGGCCTGAATCCGAGGATGAGGAGGAAGAAGAAGAGGAAGATGAGGAGGAGGACGATCCAGGAAGTGGAGAGATAGACAGGGTGGATCGGCCTTATAGAATGATAAATGGACATAATGATGGAGCCGTTGGTGTTGTTGATGTTGATGAGGATGAAGAGAGTGATGCTGATGAGGAGACTGAGATATCTAGACAGGTAAATGGAACCAATCATGAAGCCAATGGCTTTCGGGTTGCACCTGTGGAAGGAGAGGAAATTGATGAATATGAAGAATGTGATGACGATGAAGATCATGAACTGGGGGAGGAAGAAATCGATGAAGAGGAAGGTGATGATGATGATGATGTGGTTGAGATCCATGAGATTGAGGACAGTGATGGCGAAGAAGACGGGGTTGAGTATGAGGAGGATGAGGACGATGATGAGGACGAGGATGATGAGGAAGAAGTTGATAATGAAGAGGGGGACTTTGCAGAACCAGAGAGTACAGGGCGAGTGGCAAGTACGGAAGGTGAAATTGATGGACATGAGCAGGGTGAGGATGATTATGAGGAGGATGAGGACGATGATGAGGACGAGGATGATGAGGAAGAAGTTGATAATGAAGAGGGGGACTTTGCAGAACCAGAGAGTACAGGGCGAGTGGCAAGTACGGAAGGTGAAATTGATGGACATGAGCAGGGTGAGGATGATGTAGATGAGGAGGATAATGGAGAGACTGAAGAGGAGCAAGGTGTTGAGGGAGATGTCGAATTTGAAGATGAAGAGGATGGTGAGGAAGAGGATGAAGATTACGGCTCAGGGTACTTAGTTCAACCAGTGATGCAGGCTGAGGAAGAAGATGTTGGAGGTAGTGATATGGACCCAGGAAATGACGAAGATAATGATGATGAGCAGGAGGAAGAAGTCGAAGATGATGATGAGGTTGAGTTAATTCAGCCCTCTTCTGCCCACCATAAACGAAAGAGAGATGAAGAAGAAGAAGAAGCTGACGAAGACGAAGATGAAGGAGAGAGCGAGGAAGATGACGAAGGGGAAGATGTGGTCAATCACAAGAAGTCGACAAAGAAGCATCGATGA 1584 46.46 MRYRVSYLMDEIWERAVETALDGQTDLASARALTLDGAVKCAQGRLPPPTLLEKFPNLQHLSIANIGVSSLEQFPHLPNLQKLILSDNRIAGGLEFLVEAGLDSLRDLDLSNNRIQYIEDLEPLAQLKLVSLDLYESPVTRVKDYRSRVFGLIKSLKYLDKMDSEENERPESEDEEEEEEEDEEEDDPGSGEIDRVDRPYRMINGHNDGAVGVVDVDEDEESDADEETEISRQVNGTNHEANGFRVAPVEGEEIDEYEECDDDEDHELGEEEIDEEEGDDDDDVVEIHEIEDSDGEEDGVEYEEDEDDDEDEDDEEEVDNEEGDFAEPESTGRVASTEGEIDGHEQGEDDYEEDEDDDEDEDDEEEVDNEEGDFAEPESTGRVASTEGEIDGHEQGEDDVDEEDNGETEEEQGVEGDVEFEDEEDGEEEDEDYGSGYLVQPVMQAEEEDVGGSDMDPGNDEDNDDEQEEEVEDDDEVELIQPSSAHHKRKRDEEEEEADEDEDEGESEEDDEGEDVVNHKKSTKKHR 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 895035 898084 - Bda018766.2 Bda04g00056 5078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00056 527 MobiDBLite consensus disorder prediction 392 434 - -
Bda04g00056 527 Coils Coil 162 182 - -
Bda04g00056 527 SMART LRR_sd22_2 102 123 - -
Bda04g00056 527 SMART LRR_sd22_2 77 96 - -
Bda04g00056 527 MobiDBLite consensus disorder prediction 167 190 - -
Bda04g00056 527 SUPERFAMILY L domain-like 48 164 - -
Bda04g00056 527 Coils Coil 484 511 - -
Bda04g00056 527 Gene3D Ribonuclease Inhibitor 11 175 IPR032675 -
Bda04g00056 527 PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 9 324 IPR045081 -
Bda04g00056 527 MobiDBLite consensus disorder prediction 479 494 - -
Bda04g00056 527 MobiDBLite consensus disorder prediction 162 527 - -
Bda04g00056 527 ProSiteProfiles Leucine-rich repeat profile. 104 125 IPR001611 GO:0005515
Bda04g00056 527 MobiDBLite consensus disorder prediction 449 478 - -
Bda04g00056 527 MobiDBLite consensus disorder prediction 495 513 - -
Bda04g00056 527 MobiDBLite consensus disorder prediction 252 325 - -
Bda04g00056 527 MobiDBLite consensus disorder prediction 343 374 - -
Bda04g00056 527 PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32-RELATED PROTEIN 2 9 324 - -
Bda04g00056 527 Pfam Leucine-rich repeat 67 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00056 - - - mnt:21397740 426.017
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda04g00056 Bda10g00127 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g01011 Bda-Chr6:35134336 Bda04g00056 Bda-Chr4:895035 8.26E-07 transposed
Bda10g00127 Bda-Chr10:3549732 Bda04g00056 Bda-Chr4:895035 5.53E-146 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g950 . . Bda04g00056 Bda10g00127 . . Bma09g00073 Bma15g01001 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0802 Cone12ag0748 . . . . . . Blo05g00791 Blo06g00131 . . . Bpe06g00048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015391 2 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 12
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00056 Bda_Chr04 FPKM 27.416653 30.895889 21.295551 22.811703 12.799657 12.64875 14.247179 44.905811 41.046528