Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00061 ATGGCGACAGACTTGGATAATTCCTCTACTGCTTCAGGCGAAGCTAGTGTTTCGTCCTCTGGAAATCAACCGCCACCCCCAAAATCAACCGCCAAGAAAAAGCGAAACCTACCAGGAATGCCAGATCCGGACGCTGAGGTAATTGCTCTGTCTCCGAAGACTCTCATGGCGACGAATCGATTCGTCTGTGAAATTTGCAGCAAGGGTTTTCAAAGGGATCAGAATTTACAGCTGCATCGAAGAGGTCATAATCTTCCATGGAAGCTGAAGCAGCGTTCGAGTAAGGAGGTGAAGAAGAGAGTCTATGTCTGCCCCGAGTCGTCCTGTGTCCACCATGATCCTTCTCGAGCTCTGGGCGATCTCACCGGAATAAAGAAGCATTTCTGTAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCGGTTCAGTCCGATTGGAAAGCTCATTCCAAAATCTGCGGCACCAGAGAGTATAAGTGCGATTGCGGGACCTTGTTTTCCAGGAGGGATAGCTTCATCACGCACAGAGCTTTCTGCGATGCATTGGCCGAGGAGAGCGCCAGAGCTCAAACTCGTCCTCAACAGCCAACCATGGCGGAGTCTGACCCAAAAGTTCATCCTCCTGTTAACACTTCACTGTCGCCGCCTTCTTCAGCTCCAGTGCCGGCTGCTCCTCCACAGTCGACCAGTGGTGTCCCGTCAGCTTTGCCGATTCAGGGTCAAGCTCAACTTTTTTCTGCCCTTTTACTCTTGTTTACAGAGCCGGCGGAAAATCCCCCACCAATTATCGAAGAAGTACCGACCGGAACGGGATTAAACGGGAGCTGTAGTAGCAGTACAAGCCCGAGCAGCCATGGCTGCTCGAGCAGTAGTGTATTCGCAAGCTTATTTGCTTCCTCAAATGCAGCCGTGAACTTACCTCCTCAGCAACCCCCTGCCTTCACCGATCTAATCCGAGCCATGGGAAGGTCAGATCGCCCAGCTGAGCTAGCCCTTTCTTCACCAACTGAACCCATTTCTCTCTGCCTCTCAACGACCCATCACAGGCCGTCAATTTTTGGGGCTGACAGCCAGTACCCACCTCCTCCGCAGCTGCCACCCATGTCAGCCACAGCCCTTCTTCAGAAAGCTGCTCAAATGGGGGCTGTAGCCACTAATGGATCATTTCTTCGAGGGTTTGGCTTAGTCACCTCAGCTTCTTCACCTACGCAGCAAGAGAGCCTCCAATGGAGTCAGAGGCAAGTCGAGCCGGAGTCTGCAGGGCTCGGCGTTGGACTTCCTTATGATGGAAGCTCTGGATTGAAGGAGCTGATGATGGGAAATCATTCCATTTTTGGTCCTAAGCAAACTACACTTGATTTTCTGGGTCTTGGAATGGCTGCCGGTGGGAGTCCCAGTGGCAGCCTGTCTGCATTAATCACGTCCATTGGCGGTGGTCTAGACGTTGCAGCTGCCGCCTCCCTCGAATTCTCCGGCAAAGACATGAGCAGAAACTTGTGA 1518 52.11 MATDLDNSSTASGEASVSSSGNQPPPPKSTAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKRVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARAQTRPQQPTMAESDPKVHPPVNTSLSPPSSAPVPAAPPQSTSGVPSALPIQGQAQLFSALLLLFTEPAENPPPIIEEVPTGTGLNGSCSSSTSPSSHGCSSSSVFASLFASSNAAVNLPPQQPPAFTDLIRAMGRSDRPAELALSSPTEPISLCLSTTHHRPSIFGADSQYPPPPQLPPMSATALLQKAAQMGAVATNGSFLRGFGLVTSASSPTQQESLQWSQRQVEPESAGLGVGLPYDGSSGLKELMMGNHSIFGPKQTTLDFLGLGMAAGGSPSGSLSALITSIGGGLDVAAAASLEFSGKDMSRNL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1006327 1008414 + Bda018760.1 Bda04g00061 5083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00061 505 MobiDBLite consensus disorder prediction 266 290 - -
Bda04g00061 505 MobiDBLite consensus disorder prediction 193 241 - -
Bda04g00061 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Bda04g00061 505 Gene3D Classic Zinc Finger 41 111 - -
Bda04g00061 505 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Bda04g00061 505 Gene3D Classic Zinc Finger 115 195 - -
Bda04g00061 505 MobiDBLite consensus disorder prediction 1 45 - -
Bda04g00061 505 MobiDBLite consensus disorder prediction 276 290 - -
Bda04g00061 505 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Bda04g00061 505 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Bda04g00061 505 MobiDBLite consensus disorder prediction 215 233 - -
Bda04g00061 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 503 - -
Bda04g00061 505 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 503 - -
Bda04g00061 505 SMART c2h2final6 61 83 IPR013087 -
Bda04g00061 505 SMART c2h2final6 137 157 IPR013087 -
Bda04g00061 505 SMART c2h2final6 102 132 IPR013087 -
Bda04g00061 505 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00061 Bda10g00123 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00061 Bda-Chr4:1006327 Bda10g00126 Bda-Chr10:3491616 0 dispersed
Bda03g01725 Bda-Chr3:56717283 Bda04g00061 Bda-Chr4:1006327 1.22E-120 transposed
Bda09g00187 Bda-Chr9:2692583 Bda04g00061 Bda-Chr4:1006327 1.53E-102 transposed
Bda12g01070 Bda-Chr12:42429856 Bda04g00061 Bda-Chr4:1006327 4.04E-118 transposed
Bda10g00123 Bda-Chr10:3211502 Bda04g00061 Bda-Chr4:1006327 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15779 PF00096 zf-C2H2 0.0087 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00061 K25869 - tcc:18610967 669.077