Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda04g00061 | ATGGCGACAGACTTGGATAATTCCTCTACTGCTTCAGGCGAAGCTAGTGTTTCGTCCTCTGGAAATCAACCGCCACCCCCAAAATCAACCGCCAAGAAAAAGCGAAACCTACCAGGAATGCCAGATCCGGACGCTGAGGTAATTGCTCTGTCTCCGAAGACTCTCATGGCGACGAATCGATTCGTCTGTGAAATTTGCAGCAAGGGTTTTCAAAGGGATCAGAATTTACAGCTGCATCGAAGAGGTCATAATCTTCCATGGAAGCTGAAGCAGCGTTCGAGTAAGGAGGTGAAGAAGAGAGTCTATGTCTGCCCCGAGTCGTCCTGTGTCCACCATGATCCTTCTCGAGCTCTGGGCGATCTCACCGGAATAAAGAAGCATTTCTGTAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCGGTTCAGTCCGATTGGAAAGCTCATTCCAAAATCTGCGGCACCAGAGAGTATAAGTGCGATTGCGGGACCTTGTTTTCCAGGAGGGATAGCTTCATCACGCACAGAGCTTTCTGCGATGCATTGGCCGAGGAGAGCGCCAGAGCTCAAACTCGTCCTCAACAGCCAACCATGGCGGAGTCTGACCCAAAAGTTCATCCTCCTGTTAACACTTCACTGTCGCCGCCTTCTTCAGCTCCAGTGCCGGCTGCTCCTCCACAGTCGACCAGTGGTGTCCCGTCAGCTTTGCCGATTCAGGGTCAAGCTCAACTTTTTTCTGCCCTTTTACTCTTGTTTACAGAGCCGGCGGAAAATCCCCCACCAATTATCGAAGAAGTACCGACCGGAACGGGATTAAACGGGAGCTGTAGTAGCAGTACAAGCCCGAGCAGCCATGGCTGCTCGAGCAGTAGTGTATTCGCAAGCTTATTTGCTTCCTCAAATGCAGCCGTGAACTTACCTCCTCAGCAACCCCCTGCCTTCACCGATCTAATCCGAGCCATGGGAAGGTCAGATCGCCCAGCTGAGCTAGCCCTTTCTTCACCAACTGAACCCATTTCTCTCTGCCTCTCAACGACCCATCACAGGCCGTCAATTTTTGGGGCTGACAGCCAGTACCCACCTCCTCCGCAGCTGCCACCCATGTCAGCCACAGCCCTTCTTCAGAAAGCTGCTCAAATGGGGGCTGTAGCCACTAATGGATCATTTCTTCGAGGGTTTGGCTTAGTCACCTCAGCTTCTTCACCTACGCAGCAAGAGAGCCTCCAATGGAGTCAGAGGCAAGTCGAGCCGGAGTCTGCAGGGCTCGGCGTTGGACTTCCTTATGATGGAAGCTCTGGATTGAAGGAGCTGATGATGGGAAATCATTCCATTTTTGGTCCTAAGCAAACTACACTTGATTTTCTGGGTCTTGGAATGGCTGCCGGTGGGAGTCCCAGTGGCAGCCTGTCTGCATTAATCACGTCCATTGGCGGTGGTCTAGACGTTGCAGCTGCCGCCTCCCTCGAATTCTCCGGCAAAGACATGAGCAGAAACTTGTGA | 1518 | 52.11 | MATDLDNSSTASGEASVSSSGNQPPPPKSTAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKRVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARAQTRPQQPTMAESDPKVHPPVNTSLSPPSSAPVPAAPPQSTSGVPSALPIQGQAQLFSALLLLFTEPAENPPPIIEEVPTGTGLNGSCSSSTSPSSHGCSSSSVFASLFASSNAAVNLPPQQPPAFTDLIRAMGRSDRPAELALSSPTEPISLCLSTTHHRPSIFGADSQYPPPPQLPPMSATALLQKAAQMGAVATNGSFLRGFGLVTSASSPTQQESLQWSQRQVEPESAGLGVGLPYDGSSGLKELMMGNHSIFGPKQTTLDFLGLGMAAGGSPSGSLSALITSIGGGLDVAAAASLEFSGKDMSRNL | 505 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1006327 | 1008414 | + | Bda018760.1 | Bda04g00061 | 5083 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda04g00061 | 505 | MobiDBLite | consensus disorder prediction | 266 | 290 | - | - | |
Bda04g00061 | 505 | MobiDBLite | consensus disorder prediction | 193 | 241 | - | - | |
Bda04g00061 | 505 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
Bda04g00061 | 505 | Gene3D | Classic Zinc Finger | 41 | 111 | - | - | |
Bda04g00061 | 505 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Bda04g00061 | 505 | Gene3D | Classic Zinc Finger | 115 | 195 | - | - | |
Bda04g00061 | 505 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Bda04g00061 | 505 | MobiDBLite | consensus disorder prediction | 276 | 290 | - | - | |
Bda04g00061 | 505 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 157 | IPR036236 | - | |
Bda04g00061 | 505 | Pfam | Zinc finger, C2H2 type | 61 | 83 | IPR013087 | - | |
Bda04g00061 | 505 | MobiDBLite | consensus disorder prediction | 215 | 233 | - | - | |
Bda04g00061 | 505 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 503 | - | - | |
Bda04g00061 | 505 | PANTHER | ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 | 1 | 503 | - | - | |
Bda04g00061 | 505 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
Bda04g00061 | 505 | SMART | c2h2final6 | 137 | 157 | IPR013087 | - | |
Bda04g00061 | 505 | SMART | c2h2final6 | 102 | 132 | IPR013087 | - | |
Bda04g00061 | 505 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda04g00061 | Bda10g00123 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda04g00061 | Bda-Chr4:1006327 | Bda10g00126 | Bda-Chr10:3491616 | 0 | dispersed | |
Bda03g01725 | Bda-Chr3:56717283 | Bda04g00061 | Bda-Chr4:1006327 | 1.22E-120 | transposed | |
Bda09g00187 | Bda-Chr9:2692583 | Bda04g00061 | Bda-Chr4:1006327 | 1.53E-102 | transposed | |
Bda12g01070 | Bda-Chr12:42429856 | Bda04g00061 | Bda-Chr4:1006327 | 4.04E-118 | transposed | |
Bda10g00123 | Bda-Chr10:3211502 | Bda04g00061 | Bda-Chr4:1006327 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15779 | PF00096 | zf-C2H2 | 0.0087 | CL0361 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda04g00061 | K25869 | - | tcc:18610967 | 669.077 |