Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00062 ATGAATTCAAAGCTTTTTACTGTACTGTTCTTCCTTCTTCTCTCTTCTTTACGAGCGTCTGGTTTTGACGACGGCGAGACCTTTCTGGGTCCGGTGGTGAGGAGAGAGGAGAGGAAATCGCTGGTTGTAACAGACTACGGAGAGATCTCCGCCGTCGATATCAGAGATGGAACGCGCTCGGAACCCTACCATATCCAGTTAACAGACTACGGAGAGATCTCCGCCGTCGATATCAGAGATGGAACGCGCTCGGAACCCTACCATATCCAGTTCATCACCCTGGAACCTAACTCCCTCTTTCTTCCTGTTCTTCTCCAAGCCGACATGGTCTTCTACGTTCAAACTGGGAGAGGAAGGTTGCACTGGGGAGACGATGATGAGATGAGGAAGGTGGACCTAAGGCGAGGAGATGTTTACAGGCTTCATTCTGGGTCTGTGTTTCATATGCAGAGCAATTTAGAGATAGAGAGAGAAAAGCTTAGGATCTTTGCATTCTTCGCTAATCCAAAAGATGAATTATACGAGCGAGAAATCGGACCGTACTCAAGCATCATCGACCTAGTTCGGGGTTTTGATCGGAAAGTTCTCCGGGAAGCATTCAAGGTCTCAGAGGAGGTGATAGAAGAAATGGTAAGTGGGGTGAGGCCACCTCAAATAGTTCACGCTGTTCCGACGAAGAAGAAGAAGACTTTCTGGGAGATGGAGGCTCGGTTCTTGAAATCATTTTCAGAAGGGAGAAAATCCATTGAAAACAACAAAAAGAAGCAATCGAAGGGTTCGATGATGGGTCCGCATTGGAATCCAATGGCGAATGAGGTAGCAATAGTACTGAAAGGGAGGGGGATGGTTCGAGTTGTTCGTTCGAACGAGAAGAACAGTACAGAGTGCAGTAGTACCAGGTTTAGAGTGGAGGAGGGAGATGTATTTGCAGTTCCAAGATTCCATCCAATGGCTCAGATGTCGTTCAACAACGGATCAATGGTTTTCATGGGGTTCAGTACAACGACGAGGAGAAATCATCCACAGTTTCTGGCCGGGAAAAGCTCGGTTTTGCGAGCTTTAGACAAGGATGTTATGGCGGTTTCGTTTAATGTCAATACGAGTGTAATTGAGCAGGTTCTGGGGAAGCAGGATGAGTCTGTCATATTGGAGTGTGTTTCTTGCGCTGAGGAAGAGGAGAGGGTAATGGAAGAGGAGATAGAGAAAGAAAGGGAGGAGGCTAGAAAGAGGGAAGAAGAGGAAGCTAGGAAAAGAGAGGAGGAAGAAGAGAGGAAGAGGAGAGAAGAAGAAGAAGAAGAGGAAGCAAGAAGAGAGGAAGAGGAACAGAAGAGAAGAGAAGAAGAAGAAGCCAGAAGAGAGGAAGAGGAGCGAAAGAGAAGAGAAGAGGAGGAACAGAAGAGAAGAGAAGAGGAAGAGGCGGAACGAGAAAGAAGAGAAGAGGAGGAAGAACGAGAAAGAAGAGAAGAAGAGGAGGAAGCCAGAAGGGAGGAAGAGGAACGAAAGAGAAGACGAAAGGAGGAGGAAGCCAGAAGCCAGGAAGAGAAAAGGAGAAGAAGAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAAGGGAAAGAGAGTGGGAAGAAGCAGAGGCTAGAAAACAGGAAGAAGAGAGACAAAAGAGAGCCAGAGAAATAGAGGAGAGGAGAGAGAGAGAGGAGGAAGGAGAGGAGGCAGAAGGAGAAGGAAGAAGATATGTGAAGATATGGAAGTTTTAA 1749 47.23 MNSKLFTVLFFLLLSSLRASGFDDGETFLGPVVRREERKSLVVTDYGEISAVDIRDGTRSEPYHIQLTDYGEISAVDIRDGTRSEPYHIQFITLEPNSLFLPVLLQADMVFYVQTGRGRLHWGDDDEMRKVDLRRGDVYRLHSGSVFHMQSNLEIEREKLRIFAFFANPKDELYEREIGPYSSIIDLVRGFDRKVLREAFKVSEEVIEEMVSGVRPPQIVHAVPTKKKKTFWEMEARFLKSFSEGRKSIENNKKKQSKGSMMGPHWNPMANEVAIVLKGRGMVRVVRSNEKNSTECSSTRFRVEEGDVFAVPRFHPMAQMSFNNGSMVFMGFSTTTRRNHPQFLAGKSSVLRALDKDVMAVSFNVNTSVIEQVLGKQDESVILECVSCAEEEERVMEEEIEKEREEARKREEEEARKREEEEERKRREEEEEEEARREEEEQKRREEEEARREEEERKRREEEEQKRREEEEAERERREEEEERERREEEEEARREEEERKRRRKEEEARSQEEKRRRREEEEEEEEEEEEEREREWEEAEARKQEEERQKRAREIEERREREEEGEEAEGEGRRYVKIWKF 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1028429 1030672 - Bda018759.1 Bda04g00062 5084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00062 582 Pfam Cupin 257 368 IPR006045 -
Bda04g00062 582 Pfam Cupin 83 206 IPR006045 -
Bda04g00062 582 Gene3D Jelly Rolls 58 231 IPR014710 -
Bda04g00062 582 MobiDBLite consensus disorder prediction 537 582 - -
Bda04g00062 582 PANTHER OS03G0336100 PROTEIN-RELATED 4 66 - -
Bda04g00062 582 PANTHER OS03G0336100 PROTEIN-RELATED 68 253 - -
Bda04g00062 582 PANTHER OS03G0336100 PROTEIN-RELATED 257 432 - -
Bda04g00062 582 SMART Cupin_1_3 240 371 IPR006045 -
Bda04g00062 582 SMART Cupin_1_3 64 208 IPR006045 -
Bda04g00062 582 MobiDBLite consensus disorder prediction 400 522 - -
Bda04g00062 582 MobiDBLite consensus disorder prediction 393 582 - -
Bda04g00062 582 Gene3D Jelly Rolls 249 397 IPR014710 -
Bda04g00062 582 CDD cupin_7S_vicilin-like_C 257 380 - -
Bda04g00062 582 CDD cupin_7S_vicilin-like_N 68 228 - -
Bda04g00062 582 PANTHER PREPROMP73 4 66 - -
Bda04g00062 582 PANTHER PREPROMP73 68 253 - -
Bda04g00062 582 PANTHER PREPROMP73 257 432 - -
Bda04g00062 582 SUPERFAMILY RmlC-like cupins 60 380 IPR011051 -
Bda04g00062 582 Coils Coil 386 565 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00062 - - - mesc:110630427 407.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00062 Bda-Chr4:1028429 Bda11g00586 Bda-Chr11:5995967 7.80E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00062 Bda_Chr04 FPKM 91.513008 97.861565 107.635185 98.924309 40.409172 46.636589 40.844028 60.730217 62.481026