Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00063 ATGGGGACAGGAGAAGATGGTACACCATCTAAAAATTCAAAACCAGTATCTTCGTCTCAGGAAATACCAACAACTCCATATCCTGATTGGTCAAGCTCGATACAGGCTTATTATGGTGCTGGTGCTACACCACCTCCATTTTTTGCATCGACTGTAGCTTCTCCAACTCCTCACCCCTATTTGTGGGGAAGTCAGCATCCTTTGATTCCACCATATGGGACTCCAGTACCGTATACGGCAATTTATCCTCCCGGGGGGATTTATGCTCATCCTAGTATGGCAATGACTCCTGGCACAGTTCATACAAATACAGAGCTGGAAGGGAAGTCTCCAGAGGTAAAAGACAGGGCTTTGGCAAAGAAAGCGATAGGAAATGCGGGCTCATCTGGTGGCAAAGCAGGGGAGGGTGGCAAGGTGGCCTCAGGTTCAGGAAACGATGGTGCTTCTCAAAGTGCGGATAGTGGCTCGGAGGGTTCGTCTGACGGTAGTGATGAGAATCCTAATCAACAGGAATTTACGGGAAATAAAAAGGGTAGCTTTGACCAGATGCTTGCTGATGGTATTGTTTTTTCTGTGATGGTGGAATGTATCTATTTCTTCCGATTATCTTCTTTATTTACTGTGTTGTTTTCAGGAGCAAATGCACAAAGTAGCGGAAAACCTGCTACTAATCTAAATATTGGAATGGATTTATGGAATACTTCTTCTGGCTCTGCGAAAGCCAGATCAAATCCATCTGCTACTTCATCTGCTATCATTCCTGCAACGATGATTGGCCGTGAAGGCGTAATGCCAGACCAATGGATTCAAGATGAACGGGAACTAAAACGACAGAAGAGGAAGCAGTCGAATAGGGAGTCAGCCCGGAGGTCAAGATTGCGTAAGCAGGCGGAGTGTGAAGAGCTACAAGCAAGAGTGCAGACTTTGAGCAACGAGAATCGGACTCTCCGGGACGAACTGCAGAGGATTTCTGAAGAATGCGAGAAGCTCACATCGGAAAACAGTAACATGAAGGAAGAACTAACCCGGTTGTGCGGACCGGAGGCGTTGGCTAACATGGAACAAGAGGGAGGTGAAGGGGGATAG 1086 46.87 MGTGEDGTPSKNSKPVSSSQEIPTTPYPDWSSSIQAYYGAGATPPPFFASTVASPTPHPYLWGSQHPLIPPYGTPVPYTAIYPPGGIYAHPSMAMTPGTVHTNTELEGKSPEVKDRALAKKAIGNAGSSGGKAGEGGKVASGSGNDGASQSADSGSEGSSDGSDENPNQQEFTGNKKGSFDQMLADGIVFSVMVECIYFFRLSSLFTVLFSGANAQSSGKPATNLNIGMDLWNTSSGSAKARSNPSATSSAIIPATMIGREGVMPDQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLSNENRTLRDELQRISEECEKLTSENSNMKEELTRLCGPEALANMEQEGGEGG 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1031813 1034645 - Bda018758.1 Bda04g00063 5085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00063 361 CDD bZIP_plant_GBF1 277 327 IPR045314 GO:0003700|GO:0006355
Bda04g00063 361 MobiDBLite consensus disorder prediction 123 178 - -
Bda04g00063 361 Pfam bZIP transcription factor 272 334 IPR004827 GO:0003700|GO:0006355
Bda04g00063 361 PANTHER G-BOX-BINDING FACTOR 1 1 356 - -
Bda04g00063 361 Pfam G-box binding protein MFMR 1 93 IPR012900 -
Bda04g00063 361 MobiDBLite consensus disorder prediction 1 28 - -
Bda04g00063 361 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 279 294 IPR004827 GO:0003700|GO:0006355
Bda04g00063 361 MobiDBLite consensus disorder prediction 274 295 - -
Bda04g00063 361 Gene3D - 275 329 - -
Bda04g00063 361 PRINTS cAMP response element binding (CREB) protein signature 309 326 - -
Bda04g00063 361 PRINTS cAMP response element binding (CREB) protein signature 224 239 - -
Bda04g00063 361 PRINTS cAMP response element binding (CREB) protein signature 289 309 - -
Bda04g00063 361 PRINTS cAMP response element binding (CREB) protein signature 271 287 - -
Bda04g00063 361 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 274 337 IPR004827 GO:0003700|GO:0006355
Bda04g00063 361 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 356 IPR044827 GO:0003700|GO:0006355|GO:0043565
Bda04g00063 361 SUPERFAMILY Leucine zipper domain 275 331 IPR046347 GO:0003700|GO:0006355
Bda04g00063 361 MobiDBLite consensus disorder prediction 143 177 - -
Bda04g00063 361 SMART brlzneu 272 336 IPR004827 GO:0003700|GO:0006355
Bda04g00063 361 Coils Coil 285 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00063 K09060 GBF; plant G-box-binding factor - csv:101217128 456.832
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda04g00063 Bda10g00121 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00063 Bda-Chr4:1031813 Bda07g00057 Bda-Chr7:849594 6.51E-62 dispersed
Bda10g00121 Bda-Chr10:3166845 Bda04g00063 Bda-Chr4:1031813 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g930 . . Bda04g00063 Bda10g00121 . . . . . . . . Car03g00698 Car07g00439 Sed14g1098 Cpe19g00799 Cpe10g00596 Bhi03g01272 Tan03g1960 Cmetu08g0851 . Hepe04g1491 . . Cla01g01889 Cam01g1979 Cec04g1631 Cco04g1697 Clacu01g1999 Cmu01g1870 Cre04g1551 . . Cone6ag1607 Cone9ag1533 Lsi01g00696 . . Cme08g00828 Blo05g00785 Blo06g00126 . . Bpe10g00107 Bpe06g00053 . . . Cmo03g00796 . . . . . . . . . . . . . . . . . . . . . . Csa06g03222 Chy02g00666 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007671 2 3 2 0 2 0 2 1 1 1 1 0 0 1 1 1 1 2 2 0 1 1 1 1 1 1 1 3 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15780 PF07777 MFMR 3.60E-32 No_clan Bda TF