Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00064 GGTCAGGGAAGACAGAGACGACGTCGTCGGAGGAACGAATCGGAGAGTGCGACGGCGGGGTTGAAAAAGGGAAAACTGAACTCAGAGCAACTGAGTCTTCTCGAAATGAACTTTGGAAACGAACACAAACTGGAGTGTGAGAGAAAAGATCGATTGGCTTCAGAACTGGGTCTGGATCCTCGTACTGTTGCTGTCTGGTTTCAGAACAGACGAGCTCGCTGGAAGAGCAAGAAAATGGAGGAAGAATACTTTTCTCTGAAGAAATCTCAAGAATCTGTCCTCCTTCAGAACTCACAGCTCGAATCTGAGATTATGAAACTGAAGGAGCAACTAATGGAAGCAGAGAAGGAGATCCAACGGCTATCAAGCAACAGTCCGAGCTCGTCGTTCTCAATCGACGGCATAGATGAAGCGGCATTTGTCGGGCAATTTGGATACGAAGATTGTTTTTACATGCAGCGTGATAACTATATAATTCCAGGAATGGAATGGGTTAATCTGTATGATTAA 510 45.49 GQGRQRRRRRRNESESATAGLKKGKLNSEQLSLLEMNFGNEHKLECERKDRLASELGLDPRTVAVWFQNRRARWKSKKMEEEYFSLKKSQESVLLQNSQLESEIMKLKEQLMEAEKEIQRLSSNSPSSSFSIDGIDEAAFVGQFGYEDCFYMQRDNYIIPGMEWVNLYD 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1067294 1068257 - Bda018756.1 Bda04g00064 5086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00064 169 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Bda04g00064 169 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
Bda04g00064 169 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Bda04g00064 169 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Bda04g00064 169 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40 5 168 - -
Bda04g00064 169 Pfam Homeodomain 26 75 IPR001356 GO:0003677
Bda04g00064 169 Gene3D - 14 84 - -
Bda04g00064 169 MobiDBLite consensus disorder prediction 1 26 - -
Bda04g00064 169 SMART HOX_1 19 81 IPR001356 GO:0003677
Bda04g00064 169 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 5 168 IPR045224 GO:0003700
Bda04g00064 169 SUPERFAMILY Homeodomain-like 23 83 IPR009057 -
Bda04g00064 169 CDD homeodomain 22 78 IPR001356 GO:0003677
Bda04g00064 169 Coils Coil 90 124 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda04g00064 Bda11g01876 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00064 Bda-Chr4:1067294 Bda14g01152 Bda-Chr14:10700030 4.24E-24 dispersed
Bda11g01876 Bda-Chr11:53819580 Bda04g00064 Bda-Chr4:1067294 1.58E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15781 PF00046 Homeodomain 4.50E-16 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00064 K09338 - egr:104419765 198.364