Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda04g00071 | ATGGCGGATCAATCTGACCCTTCGCCTCTCATGGCTCCTTCACCGATCACTGAGAAAGGGGAAATTGACCTTGAAGCTGGGCCTGGAGAACAAATTCAGTGCCGAATTTGCCTCGAGACTGACGGTCGCGATTTCATTGCTCCCTGCAAATGCAAAGGAACGTCTAAATATGTTCATAGAGACTGCTTGGATCATTGGCGAGCTGTGAAGGAAGGATTTGCTTTCGCTCATTGCACCACCTGCAAAGCTCCTTACCATTTACGAGTTTACACTTTTGCTGATAGAAAATGGCGAACACTCAAATTTCGATTTTTCGTGACGAGGGACATTTTATTTATATTTTTGGTGGTTCAGCTTGTGATAGCTTCATTATCATATATGGTGTATTTGATTGATGGTTACCAAAAGAACTGGCTTCGTCTTGCATGGGGTTTTGATAATGAACTCAGTTTCTACTATATATGTGGAGCACTTCTGTTTTTTGCATTGCTTGGTCTATCGGGGTGTTTTATTACTTGCTATGATCGAAGAGTTAGAAATGATTTGGCTCAGCCTTGTAGAGAATTATGTCTATGTTGCTGCCACCCTGGAGTTTGTGCAGATTGTCATTTACCTGGCACTCTCTGTATGTGGACTGACTGCACAACTTGCTTTGAAAGTTGTGCCACTATGTCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCTGGGCTACCATTACTATTTATAATGGCTTTGATTGTTCTTGGTCTTTTCACAGTGATCGGGATATTTTATAGTGTTCTAGTGGCTACTATGGTCGGACAACGAATTTGGCAACGGCATTATCACATACTTGCGAAGAGAATGCTAACCAAAGAGTATGTAGTCGAGGATGTGGATGGTGAGATCACGGGAACTGACTGGTCTCCTCCGCCGCTTCCACCCGAGCATGTTCAACAGCTGAAAACACTTGGTCTCCTATGA | 969 | 43.65 | MADQSDPSPLMAPSPITEKGEIDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAVKEGFAFAHCTTCKAPYHLRVYTFADRKWRTLKFRFFVTRDILFIFLVVQLVIASLSYMVYLIDGYQKNWLRLAWGFDNELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGVCADCHLPGTLCMWTDCTTCFESCATMSTECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEITGTDWSPPPLPPEHVQQLKTLGLL | 322 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1546106 | 1549475 | + | Bda018742.1 | Bda04g00071 | 5093 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda04g00071 | 322 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 322 | - | - | |
| Bda04g00071 | 322 | SMART | ringv_2 | 33 | 82 | IPR011016 | GO:0008270 | |
| Bda04g00071 | 322 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 93 | IPR013083 | - | |
| Bda04g00071 | 322 | CDD | RING_CH-C4HC3_MARCH | 34 | 82 | - | - | |
| Bda04g00071 | 322 | PANTHER | BNAA04G12620D PROTEIN | 1 | 322 | - | - | |
| Bda04g00071 | 322 | SUPERFAMILY | RING/U-box | 30 | 86 | - | - | |
| Bda04g00071 | 322 | Pfam | RING-variant domain | 34 | 81 | IPR011016 | GO:0008270 | |
| Bda04g00071 | 322 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 26 | 88 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda02g00457 | Bda-Chr2:45315215 | Bda04g00071 | Bda-Chr4:1546106 | 6.23E-66 | dispersed | |
| Bda04g00071 | Bda-Chr4:1546106 | Bda05g00634 | Bda-Chr5:54478056 | 6.38E-09 | dispersed | |
| Bda04g00071 | Bda-Chr4:1546106 | Bda10g01058 | Bda-Chr10:44631013 | 2.70E-06 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda04g00071 | - | - | csin:114258189 | 618.616 |