Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00071 ATGGCGGATCAATCTGACCCTTCGCCTCTCATGGCTCCTTCACCGATCACTGAGAAAGGGGAAATTGACCTTGAAGCTGGGCCTGGAGAACAAATTCAGTGCCGAATTTGCCTCGAGACTGACGGTCGCGATTTCATTGCTCCCTGCAAATGCAAAGGAACGTCTAAATATGTTCATAGAGACTGCTTGGATCATTGGCGAGCTGTGAAGGAAGGATTTGCTTTCGCTCATTGCACCACCTGCAAAGCTCCTTACCATTTACGAGTTTACACTTTTGCTGATAGAAAATGGCGAACACTCAAATTTCGATTTTTCGTGACGAGGGACATTTTATTTATATTTTTGGTGGTTCAGCTTGTGATAGCTTCATTATCATATATGGTGTATTTGATTGATGGTTACCAAAAGAACTGGCTTCGTCTTGCATGGGGTTTTGATAATGAACTCAGTTTCTACTATATATGTGGAGCACTTCTGTTTTTTGCATTGCTTGGTCTATCGGGGTGTTTTATTACTTGCTATGATCGAAGAGTTAGAAATGATTTGGCTCAGCCTTGTAGAGAATTATGTCTATGTTGCTGCCACCCTGGAGTTTGTGCAGATTGTCATTTACCTGGCACTCTCTGTATGTGGACTGACTGCACAACTTGCTTTGAAAGTTGTGCCACTATGTCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCTGGGCTACCATTACTATTTATAATGGCTTTGATTGTTCTTGGTCTTTTCACAGTGATCGGGATATTTTATAGTGTTCTAGTGGCTACTATGGTCGGACAACGAATTTGGCAACGGCATTATCACATACTTGCGAAGAGAATGCTAACCAAAGAGTATGTAGTCGAGGATGTGGATGGTGAGATCACGGGAACTGACTGGTCTCCTCCGCCGCTTCCACCCGAGCATGTTCAACAGCTGAAAACACTTGGTCTCCTATGA 969 43.65 MADQSDPSPLMAPSPITEKGEIDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAVKEGFAFAHCTTCKAPYHLRVYTFADRKWRTLKFRFFVTRDILFIFLVVQLVIASLSYMVYLIDGYQKNWLRLAWGFDNELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCHPGVCADCHLPGTLCMWTDCTTCFESCATMSTECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEITGTDWSPPPLPPEHVQQLKTLGLL 322
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 1546106 1549475 + Bda018742.1 Bda04g00071 5093
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00071 322 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 322 - -
Bda04g00071 322 SMART ringv_2 33 82 IPR011016 GO:0008270
Bda04g00071 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 93 IPR013083 -
Bda04g00071 322 CDD RING_CH-C4HC3_MARCH 34 82 - -
Bda04g00071 322 PANTHER BNAA04G12620D PROTEIN 1 322 - -
Bda04g00071 322 SUPERFAMILY RING/U-box 30 86 - -
Bda04g00071 322 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Bda04g00071 322 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00457 Bda-Chr2:45315215 Bda04g00071 Bda-Chr4:1546106 6.23E-66 dispersed
Bda04g00071 Bda-Chr4:1546106 Bda05g00634 Bda-Chr5:54478056 6.38E-09 dispersed
Bda04g00071 Bda-Chr4:1546106 Bda10g01058 Bda-Chr10:44631013 2.70E-06 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00071 - - csin:114258189 618.616