Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00081 ATGTCTTCAGAAACAAGATTGAAACATAAGCTCAATTGGAAACTCAAGCTTAAAACCGCGAAGTTTATGAGTATTACTGATGAAAATAGACAGACTAGAGATGTTGGCAGTGTAAAATTTTGTGATAGAGAGACAGGTGGGAAGAGGAATTCAAAAAAAGATGTGAAGAAGATTATTGCCGGTAAAGCAAGTGGGGAAAAGGTTCAGGCAAAAGAAAATAATATGCTAAGAAAGAACATTTATGTTAGTAGAAGCAGTAATCTAAAGAGAAAAGTGCAGAGTTATGGAACTCCTAGAAGCAGGCCGTCTTCTCATAACTTCAAATATGCAGTTGAAAGTACTCGAGCATCGAAAGAAAGAAGGATAACTAAAAATAAGAAAGAACAACTGCAGAATAGGGAATCAATTAGCATGGATGTTGGTCAAAGTGGTTCATTAAAGCTACTTACCAAAAGAAAAACAACATTGGGCAGATGCTTGGATATATATCAGCAAAAGTCGCCAGACTTTCCTCCTAAAAGACAAGTGTCAAACAAAAAGAAAGAAGATAAGGATTTCGGGTCGCTAGATGAGAAACCAAAGAAGAAGAAGCGTGTAATTCGGCTAGACCCATGTGATATCTCTAACAAGCGGTTGGATGATGGAATAATAGCTAATGAAAATATGGACACGAAGAATATTGATTTCGTGAAGAAAAATGAAATGTCAAAGAATGCTGAATTTCGCGCAATACAACCTAGTTCCTCAATCATTTCCTTTGTGGAAGATAATTTGTTAGGTCGTAGGCGTTCTATTGAACTTCAGAAAGCTGGCTACAACACTGATTTGTCTGCTCCGCTTGATAACATCCCCTTCTCAACCAGCAAAGAGAGAGAGCGAACTGAAGAACATATATTTAGAAACAAATTGACTTTTTTTGCTGCTGCTAAAGTGTCTTCATCATTTCCTCCTCCTGAACTCCCTGAGGTTGCATTTGCAGGAAGATCAAATGTGGGGAAGTCATCGATGCTTAATGCTCTCACCAGACAATGGGGTGTTGCACGAACATCGGACAAGCCTGGCCTGACTCAGACGATTAATTTTTTCAACCTTGGAGCAAAACTTAATTTGGTTGATTTGCCTGGATATGGATTTGCTTATGCGAAGGAAGAAGTTAAAGAGTCTTGGGAGGAACTCGTAAAGGAATATGTTTCAACAAGGGGTTGTCTAAAACGAGTATGCCTTCTTATCGACACAAAATGGGGTATGAAGCCAAGGGATCATGAACTCATTGATTTGATGGAGAGATCTCAAACAAAGTATCAAATTGTCTTAACCAAGACGGATGTGGTCTTTCCGGGCGATGTGGCACGACGTGCAATGCAAATTGAAGAGAAGCTTAAGCGTAACAAGTCTGTTGTTGAGCCTGTGATGATGGTAAGTTCAAAATCTGGTGCTGGCATAAGAAGTTTAAGAACGGTGCTGGCGAAGATTAGTAGGTTCGCCAAGATCTGA 1494 39.36 MSSETRLKHKLNWKLKLKTAKFMSITDENRQTRDVGSVKFCDRETGGKRNSKKDVKKIIAGKASGEKVQAKENNMLRKNIYVSRSSNLKRKVQSYGTPRSRPSSHNFKYAVESTRASKERRITKNKKEQLQNRESISMDVGQSGSLKLLTKRKTTLGRCLDIYQQKSPDFPPKRQVSNKKKEDKDFGSLDEKPKKKKRVIRLDPCDISNKRLDDGIIANENMDTKNIDFVKKNEMSKNAEFRAIQPSSSIISFVEDNLLGRRRSIELQKAGYNTDLSAPLDNIPFSTSKERERTEEHIFRNKLTFFAAAKVSSSFPPPELPEVAFAGRSNVGKSSMLNALTRQWGVARTSDKPGLTQTINFFNLGAKLNLVDLPGYGFAYAKEEVKESWEELVKEYVSTRGCLKRVCLLIDTKWGMKPRDHELIDLMERSQTKYQIVLTKTDVVFPGDVARRAMQIEEKLKRNKSVVEPVMMVSSKSGAGIRSLRTVLAKISRFAKI 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1626211 1629507 + Bda018731.1 Bda04g00081 5103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00081 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 490 IPR027417 -
Bda04g00081 497 TIGRFAM GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 304 488 IPR019987 GO:0005525
Bda04g00081 497 MobiDBLite consensus disorder prediction 164 197 - -
Bda04g00081 497 CDD YihA_EngB 322 491 IPR030393 GO:0005525
Bda04g00081 497 MobiDBLite consensus disorder prediction 173 197 - -
Bda04g00081 497 Pfam 50S ribosome-binding GTPase 322 440 IPR006073 GO:0005525
Bda04g00081 497 MobiDBLite consensus disorder prediction 112 133 - -
Bda04g00081 497 ProSiteProfiles EngB-type guanine nucleotide-binding (G) domain profile. 319 494 IPR030393 GO:0005525
Bda04g00081 497 Hamap Probable GTP-binding protein EngB [engB]. 307 492 IPR019987 GO:0005525
Bda04g00081 497 Gene3D - 297 495 IPR027417 -
Bda04g00081 497 TIGRFAM small_GTP: small GTP-binding protein domain 322 486 IPR005225 GO:0005525
Bda04g00081 497 PANTHER EXPRESSED PROTEIN 31 496 - -
Bda04g00081 497 Coils Coil 113 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00081 - - - pvy:116105357 547.354
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00081 Bda-Chr4:1626211 Bda04g01181 Bda-Chr4:62443634 2.15E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g888 . . Bda04g00081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag0611 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009217 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda04g00081 Bda_Chr04 FPKM 0.582766 0.679278 0.349251 0.130349 0.479305 0.341037 0.197863 0.215898 0.320193