Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda04g00096 ATGGATTCGGTGCAGCGGTTTCTATCCGAGTCGGTCAACAGAGGGACTTTGATCGGGAAGGATCAGATGGAAATGGTATCTTCTGAGATATCCTCGGCGATTCAAGAGATCATCGTTAATGGCACAGCGCTGCTCGCTTGTGCGCAGAAACCGATATCGATGGAGTCCACTTCAGAGGCAGCCGGAAAACCATCAAATTCGCCGGGGAGAGTTTCTTCTATGAGTAATTTTCGCCCTGGAAAAAGTAAGAAGGAATTGAAATCGGAGGATGTGGAGGAGGATGCGATAACCGAGACCGGAGATTGTGAAATCGATTGTGAAATTGTTGAGCTAGACGCCGTGGAATTACTGGCCGAGTGTATCCATTTCTGCGAAATCTGCGGAAAAGCATTCAAACGTGATGCGAATTTGAGAATGCACAAGCGCGCTCACGGAAACCAGTTCAAGACTCTGGAGGCTCTGGCGAAGCCGCCGGAAAAGGTCGAGAAATCGAGAACGAGGAGAACCGATTTTTCGTGCCCTTACCAACTGTGTAACCGCAATAAATCTCACAAGAACTTCAAGCCTCTGAAATCGGCGATCTGCGTGAGAAATCACTTCAAGCGGAGCCATTGCCCTAAGATGTATACGTGTAATCGCTGCAACAAGAAGAGCTTCTCCGTTTTGGCCGATTTGAAGAGCCACCTGAAGCACTGCGGAGAGCCAAAATGGCGATGCTCGTGCGGAGTGAGCTTCTCGCGCGAGGACAAGCTGTTTGCGCACGTTGCGCTGTTCGAGGGCCACATGCCGGCGGTAATGGATGAAAACGAGAGGGGAAAGGGAAAGGCTGCGTCGGCGGAAGTAGAGGAGGAGGAAAGATATTGGAATTGGTCGGAAGAAGGATTTTTCGATGGGCTGCCTGAGGAGTTTGGCAGATTAGAGAAGTATTGCTTAGAAAATGCATTTGGGTTCAGAAATGGCGTTGATCCTGGACTGGGAAATTCTTGA 987 49.65 MDSVQRFLSESVNRGTLIGKDQMEMVSSEISSAIQEIIVNGTALLACAQKPISMESTSEAAGKPSNSPGRVSSMSNFRPGKSKKELKSEDVEEDAITETGDCEIDCEIVELDAVELLAECIHFCEICGKAFKRDANLRMHKRAHGNQFKTLEALAKPPEKVEKSRTRRTDFSCPYQLCNRNKSHKNFKPLKSAICVRNHFKRSHCPKMYTCNRCNKKSFSVLADLKSHLKHCGEPKWRCSCGVSFSREDKLFAHVALFEGHMPAVMDENERGKGKAASAEVEEEERYWNWSEEGFFDGLPEEFGRLEKYCLENAFGFRNGVDPGLGNS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2079616 2080602 + Bda018707.1 Bda04g00096 5118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda04g00096 328 SMART c2h2final6 209 231 IPR013087 -
Bda04g00096 328 SMART c2h2final6 171 204 IPR013087 -
Bda04g00096 328 SMART c2h2final6 122 144 IPR013087 -
Bda04g00096 328 MobiDBLite consensus disorder prediction 55 79 - -
Bda04g00096 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Bda04g00096 328 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 1 322 - -
Bda04g00096 328 Gene3D Classic Zinc Finger 122 170 - -
Bda04g00096 328 Pfam Zinc finger, C2H2 type 123 144 IPR013087 -
Bda04g00096 328 SUPERFAMILY beta-beta-alpha zinc fingers 119 145 IPR036236 -
Bda04g00096 328 MobiDBLite consensus disorder prediction 55 92 - -
Bda04g00096 328 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Bda04g00096 328 Gene3D Classic Zinc Finger 196 266 - -
Bda04g00096 328 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 322 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00096 Bda-Chr4:2079616 Bda11g00845 Bda-Chr11:8325063 4.21E-72 dispersed
Bda04g00096 Bda-Chr4:2079616 Bda09g00221 Bda-Chr9:3046297 7.27E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15782 PF00096 zf-C2H2 0.00096 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda04g00096 - - csin:114317837 375.555