Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda04g00096 | ATGGATTCGGTGCAGCGGTTTCTATCCGAGTCGGTCAACAGAGGGACTTTGATCGGGAAGGATCAGATGGAAATGGTATCTTCTGAGATATCCTCGGCGATTCAAGAGATCATCGTTAATGGCACAGCGCTGCTCGCTTGTGCGCAGAAACCGATATCGATGGAGTCCACTTCAGAGGCAGCCGGAAAACCATCAAATTCGCCGGGGAGAGTTTCTTCTATGAGTAATTTTCGCCCTGGAAAAAGTAAGAAGGAATTGAAATCGGAGGATGTGGAGGAGGATGCGATAACCGAGACCGGAGATTGTGAAATCGATTGTGAAATTGTTGAGCTAGACGCCGTGGAATTACTGGCCGAGTGTATCCATTTCTGCGAAATCTGCGGAAAAGCATTCAAACGTGATGCGAATTTGAGAATGCACAAGCGCGCTCACGGAAACCAGTTCAAGACTCTGGAGGCTCTGGCGAAGCCGCCGGAAAAGGTCGAGAAATCGAGAACGAGGAGAACCGATTTTTCGTGCCCTTACCAACTGTGTAACCGCAATAAATCTCACAAGAACTTCAAGCCTCTGAAATCGGCGATCTGCGTGAGAAATCACTTCAAGCGGAGCCATTGCCCTAAGATGTATACGTGTAATCGCTGCAACAAGAAGAGCTTCTCCGTTTTGGCCGATTTGAAGAGCCACCTGAAGCACTGCGGAGAGCCAAAATGGCGATGCTCGTGCGGAGTGAGCTTCTCGCGCGAGGACAAGCTGTTTGCGCACGTTGCGCTGTTCGAGGGCCACATGCCGGCGGTAATGGATGAAAACGAGAGGGGAAAGGGAAAGGCTGCGTCGGCGGAAGTAGAGGAGGAGGAAAGATATTGGAATTGGTCGGAAGAAGGATTTTTCGATGGGCTGCCTGAGGAGTTTGGCAGATTAGAGAAGTATTGCTTAGAAAATGCATTTGGGTTCAGAAATGGCGTTGATCCTGGACTGGGAAATTCTTGA | 987 | 49.65 | MDSVQRFLSESVNRGTLIGKDQMEMVSSEISSAIQEIIVNGTALLACAQKPISMESTSEAAGKPSNSPGRVSSMSNFRPGKSKKELKSEDVEEDAITETGDCEIDCEIVELDAVELLAECIHFCEICGKAFKRDANLRMHKRAHGNQFKTLEALAKPPEKVEKSRTRRTDFSCPYQLCNRNKSHKNFKPLKSAICVRNHFKRSHCPKMYTCNRCNKKSFSVLADLKSHLKHCGEPKWRCSCGVSFSREDKLFAHVALFEGHMPAVMDENERGKGKAASAEVEEEERYWNWSEEGFFDGLPEEFGRLEKYCLENAFGFRNGVDPGLGNS | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2079616 | 2080602 | + | Bda018707.1 | Bda04g00096 | 5118 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda04g00096 | 328 | SMART | c2h2final6 | 209 | 231 | IPR013087 | - | |
Bda04g00096 | 328 | SMART | c2h2final6 | 171 | 204 | IPR013087 | - | |
Bda04g00096 | 328 | SMART | c2h2final6 | 122 | 144 | IPR013087 | - | |
Bda04g00096 | 328 | MobiDBLite | consensus disorder prediction | 55 | 79 | - | - | |
Bda04g00096 | 328 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 122 | 149 | IPR013087 | - | |
Bda04g00096 | 328 | PANTHER | ZINC FINGER PROTEIN STOP1 HOMOLOG | 1 | 322 | - | - | |
Bda04g00096 | 328 | Gene3D | Classic Zinc Finger | 122 | 170 | - | - | |
Bda04g00096 | 328 | Pfam | Zinc finger, C2H2 type | 123 | 144 | IPR013087 | - | |
Bda04g00096 | 328 | SUPERFAMILY | beta-beta-alpha zinc fingers | 119 | 145 | IPR036236 | - | |
Bda04g00096 | 328 | MobiDBLite | consensus disorder prediction | 55 | 92 | - | - | |
Bda04g00096 | 328 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 124 | 144 | IPR013087 | - | |
Bda04g00096 | 328 | Gene3D | Classic Zinc Finger | 196 | 266 | - | - | |
Bda04g00096 | 328 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 1 | 322 | IPR044300 | GO:0010044|GO:0010447 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda04g00096 | Bda-Chr4:2079616 | Bda11g00845 | Bda-Chr11:8325063 | 4.21E-72 | dispersed | |
Bda04g00096 | Bda-Chr4:2079616 | Bda09g00221 | Bda-Chr9:3046297 | 7.27E-71 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15782 | PF00096 | zf-C2H2 | 0.00096 | CL0361 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda04g00096 | - | - | csin:114317837 | 375.555 |